Wall clock time and date at job start Tue Mar 31 2020 05:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00452 * 2 1 4 4 H 1.48505 * 109.46940 * 90.00238 * 3 2 1 5 5 H 1.48497 * 109.47123 * 210.00107 * 3 2 1 6 6 H 1.48501 * 109.46929 * 330.00269 * 3 2 1 7 7 C 1.37882 * 119.99506 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99624 * 187.12829 * 7 2 1 9 9 C 1.50695 * 120.00219 * 7.11693 * 7 2 1 10 10 C 1.52996 * 115.55637 * 275.22229 * 9 7 2 11 11 O 1.45201 * 109.46659 * 301.70397 * 10 9 7 12 12 C 1.34732 * 117.00011 * 184.74276 * 11 10 9 13 13 O 1.21495 * 119.99516 * 0.02562 * 12 11 10 14 14 C 1.47575 * 120.00405 * 179.97438 * 12 11 10 15 15 C 1.41543 * 126.52758 * 179.71234 * 14 12 11 16 16 C 1.35349 * 105.50596 * 179.87771 * 15 14 12 17 17 N 1.35050 * 107.23760 * 0.38624 * 16 15 14 18 18 C 1.46503 * 124.88023 * 179.72213 * 17 16 15 19 19 F 1.39894 * 109.47173 * 300.00298 * 18 17 16 20 20 F 1.39908 * 109.46729 * 59.99800 * 18 17 16 21 21 N 1.28466 * 110.24289 * 359.74506 * 17 16 15 22 22 C 1.53005 * 117.49620 * 129.54695 * 9 7 2 23 23 C 1.53009 * 117.49421 * 60.89043 * 9 7 2 24 24 H 0.96996 * 120.00711 * 175.39015 * 1 2 3 25 25 H 1.08995 * 109.47289 * 61.70454 * 10 9 7 26 26 H 1.09003 * 109.47133 * 181.70653 * 10 9 7 27 27 H 1.07996 * 127.24995 * 0.02562 * 15 14 12 28 28 H 1.07997 * 126.38683 * 180.09124 * 16 15 14 29 29 H 1.08996 * 109.47536 * 179.97438 * 18 17 16 30 30 H 1.09000 * 117.49744 * 0.02562 * 22 9 7 31 31 H 1.08992 * 117.50095 * 145.02575 * 22 9 7 32 32 H 1.09000 * 117.49624 * 214.97773 * 23 9 7 33 33 H 1.08996 * 117.49557 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 1.4001 5 1 3.5467 1.4400 -0.7000 6 1 1.4467 2.6526 -0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0782 -1.1978 0.1155 9 6 1.2596 -2.4941 -0.1628 10 6 0.6775 -3.0861 1.1223 11 8 1.7459 -3.3074 2.0804 12 6 1.4154 -3.9187 3.2347 13 8 0.2661 -4.2579 3.4350 14 6 2.4496 -4.1772 4.2552 15 6 2.2566 -4.8005 5.5112 16 6 3.4769 -4.8212 6.0963 17 7 4.3413 -4.2356 5.2398 18 6 5.7724 -4.0481 5.4913 19 9 5.9457 -3.2626 6.6358 20 9 6.3790 -5.2939 5.6845 21 7 3.7284 -3.8662 4.1729 22 6 1.7682 -3.4720 -1.2240 23 6 0.4681 -2.6980 -1.4563 24 1 -0.4851 -0.8372 -0.0675 25 1 -0.0510 -2.3936 1.5439 26 1 0.1894 -4.0343 0.8969 27 1 1.3309 -5.1818 5.9164 28 1 3.7143 -5.2259 7.0690 29 1 6.2295 -3.5505 4.6360 30 1 2.6418 -3.1752 -1.8044 31 1 1.6878 -4.5370 -1.0068 32 1 -0.4671 -3.2542 -1.3917 33 1 0.4859 -1.8917 -2.1895 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776095129.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:27 Heat of formation + Delta-G solvation = -69.257118 kcal Electronic energy + Delta-G solvation = -22096.972796 eV Core-core repulsion = 18183.092617 eV Total energy + Delta-G solvation = -3913.880180 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.82519 -47.90782 -42.85915 -39.63009 -37.03801 -35.40504 -33.18074 -31.89094 -31.12955 -27.75262 -26.44827 -24.82771 -23.60602 -21.86068 -21.37321 -20.24451 -19.54183 -18.94552 -18.37573 -17.90414 -17.23284 -16.92253 -16.06081 -15.88418 -15.18412 -14.68246 -14.64993 -14.22950 -14.14524 -13.94494 -13.73208 -13.58395 -13.08530 -12.62558 -12.53644 -12.26546 -11.86603 -11.22204 -10.97358 -10.80369 -10.51623 -10.38275 -10.11460 -10.03514 -9.80241 -9.62014 -9.51813 -8.56378 -8.48347 -8.33960 -6.35556 -4.08160 1.20871 1.41078 1.80755 3.02772 3.09781 3.31187 3.44038 3.47092 3.63033 3.68976 4.12790 4.36155 4.50490 4.53476 4.94823 5.20094 5.31272 5.34316 5.48161 5.77074 5.95923 6.05790 6.11169 6.17105 6.28366 6.42601 6.54908 6.79006 6.93367 7.16522 7.21393 7.45799 8.17978 8.28430 8.45429 8.86728 9.64959 11.03676 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.016886 B = 0.004536 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.756792 B = 6171.232288 C = 6953.344912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.025 3.975 3 Si 1.070 2.930 4 H -0.288 1.288 5 H -0.288 1.288 6 H -0.284 1.284 7 C -0.561 4.561 8 H 0.057 0.943 9 C 0.014 3.986 10 C 0.110 3.890 11 O -0.311 6.311 12 C 0.543 3.457 13 O -0.508 6.508 14 C 0.033 3.967 15 C -0.166 4.166 16 C -0.006 4.006 17 N -0.349 5.349 18 C 0.498 3.502 19 F -0.174 7.174 20 F -0.175 7.175 21 N -0.213 5.213 22 C -0.190 4.190 23 C -0.168 4.168 24 H 0.273 0.727 25 H 0.070 0.930 26 H 0.045 0.955 27 H 0.173 0.827 28 H 0.189 0.811 29 H 0.176 0.824 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.870 -9.632 11.562 17.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.180 4.180 3 Si 0.899 3.101 4 H -0.215 1.215 5 H -0.214 1.214 6 H -0.210 1.210 7 C -0.599 4.599 8 H 0.075 0.925 9 C 0.013 3.987 10 C 0.037 3.963 11 O -0.225 6.225 12 C 0.385 3.615 13 O -0.396 6.396 14 C -0.129 4.129 15 C -0.192 4.192 16 C -0.145 4.145 17 N -0.147 5.147 18 C 0.364 3.636 19 F -0.155 7.155 20 F -0.156 7.156 21 N -0.047 5.047 22 C -0.227 4.227 23 C -0.205 4.205 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.063 0.937 27 H 0.190 0.810 28 H 0.206 0.794 29 H 0.193 0.807 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 10.269 -7.553 10.985 16.828 hybrid contribution -0.487 -2.199 0.750 2.374 sum 9.782 -9.752 11.736 18.125 Atomic orbital electron populations 1.70731 1.06787 1.31372 1.45315 1.25818 0.96529 1.02381 0.93297 0.83528 0.74749 0.75047 0.76818 1.21487 1.21371 1.21002 1.21220 0.94570 0.89190 1.54911 0.92490 1.19057 0.99349 0.95937 0.84354 1.22999 0.86982 0.98088 0.88253 1.86701 1.42006 1.68489 1.25271 1.19554 0.85417 0.75106 0.81430 1.90827 1.19778 1.49958 1.79019 1.21181 0.90104 1.05565 0.96067 1.21881 0.98853 1.04828 0.93682 1.22975 0.89738 1.02924 0.98866 1.46666 1.09094 1.45168 1.13750 1.21221 0.76515 0.77490 0.88337 1.93153 1.94264 1.73779 1.54322 1.93150 1.81783 1.44515 1.96190 1.73835 1.07393 1.16987 1.06435 1.22914 0.97775 0.95581 1.06426 1.22798 0.93492 1.02308 1.01912 0.91623 0.91184 0.93683 0.80977 0.79386 0.80721 0.89722 0.91297 0.91196 0.89104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.69 13.57 55.43 0.75 -25.94 16 2 C 0.02 0.70 5.39 -17.82 -0.10 0.60 16 3 Si 1.07 25.08 29.91 -169.99 -5.08 20.00 16 4 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 7 C -0.56 -15.61 8.64 -34.44 -0.30 -15.91 16 8 H 0.06 1.62 7.82 -52.48 -0.41 1.21 16 9 C 0.01 0.34 1.20 -155.66 -0.19 0.15 16 10 C 0.11 2.62 5.31 37.16 0.20 2.82 16 11 O -0.31 -7.21 10.04 -40.58 -0.41 -7.62 16 12 C 0.54 11.17 7.97 34.54 0.28 11.44 16 13 O -0.51 -10.96 16.66 -19.26 -0.32 -11.28 16 14 C 0.03 0.56 7.17 -82.79 -0.59 -0.03 16 15 C -0.17 -2.15 10.81 -39.35 -0.43 -2.58 16 16 C -0.01 -0.06 11.33 -17.17 -0.19 -0.26 16 17 N -0.35 -4.20 3.56 -66.62 -0.24 -4.43 16 18 C 0.50 4.14 6.24 59.85 0.37 4.51 16 19 F -0.17 -1.52 17.46 2.25 0.04 -1.48 16 20 F -0.17 -1.46 17.46 2.25 0.04 -1.42 16 21 N -0.21 -3.41 11.99 33.41 0.40 -3.01 16 22 C -0.19 -4.13 9.94 -26.69 -0.27 -4.40 16 23 C -0.17 -3.80 8.75 -26.69 -0.23 -4.03 16 24 H 0.27 7.92 6.15 -40.82 -0.25 7.67 16 25 H 0.07 1.79 7.76 -51.93 -0.40 1.38 16 26 H 0.04 0.98 8.01 -51.93 -0.42 0.57 16 27 H 0.17 1.88 8.06 -52.49 -0.42 1.46 16 28 H 0.19 1.22 8.06 -52.49 -0.42 0.80 16 29 H 0.18 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 31 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 32 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 33 H 0.09 2.16 8.14 -51.93 -0.42 1.74 16 LS Contribution 311.27 15.07 4.69 4.69 Total: -1.00 -33.05 311.27 -4.81 -37.86 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -3.24 Total: 0.32 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -1.45 Total: -7.68 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: 0.92 Total: -33.38 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.73 Total: -18.91 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.08 Total: -2.90 kcal Atomic # 14 Polarization: 25.08 SS G_CDS: -5.08 Total: 20.00 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.05 -4.81 -37.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776095129.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.401 kcal (2) G-P(sol) polarization free energy of solvation -33.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds