Wall clock time and date at job start Tue Mar 31 2020 05:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00452 * 2 1 4 4 H 1.48505 * 109.46940 * 90.00238 * 3 2 1 5 5 H 1.48497 * 109.47123 * 210.00107 * 3 2 1 6 6 H 1.48501 * 109.46929 * 330.00269 * 3 2 1 7 7 C 1.37882 * 119.99506 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99624 * 187.12829 * 7 2 1 9 9 C 1.50695 * 120.00219 * 7.11693 * 7 2 1 10 10 C 1.52996 * 115.55637 * 275.22229 * 9 7 2 11 11 O 1.45201 * 109.46659 * 301.70397 * 10 9 7 12 12 C 1.34732 * 117.00011 * 184.74276 * 11 10 9 13 13 O 1.21495 * 119.99516 * 0.02562 * 12 11 10 14 14 C 1.47575 * 120.00405 * 179.97438 * 12 11 10 15 15 C 1.41543 * 126.52758 * 179.71234 * 14 12 11 16 16 C 1.35349 * 105.50596 * 179.87771 * 15 14 12 17 17 N 1.35050 * 107.23760 * 0.38624 * 16 15 14 18 18 C 1.46503 * 124.88023 * 179.72213 * 17 16 15 19 19 F 1.39894 * 109.47173 * 300.00298 * 18 17 16 20 20 F 1.39908 * 109.46729 * 59.99800 * 18 17 16 21 21 N 1.28466 * 110.24289 * 359.74506 * 17 16 15 22 22 C 1.53005 * 117.49620 * 129.54695 * 9 7 2 23 23 C 1.53009 * 117.49421 * 60.89043 * 9 7 2 24 24 H 0.96996 * 120.00711 * 175.39015 * 1 2 3 25 25 H 1.08995 * 109.47289 * 61.70454 * 10 9 7 26 26 H 1.09003 * 109.47133 * 181.70653 * 10 9 7 27 27 H 1.07996 * 127.24995 * 0.02562 * 15 14 12 28 28 H 1.07997 * 126.38683 * 180.09124 * 16 15 14 29 29 H 1.08996 * 109.47536 * 179.97438 * 18 17 16 30 30 H 1.09000 * 117.49744 * 0.02562 * 22 9 7 31 31 H 1.08992 * 117.50095 * 145.02575 * 22 9 7 32 32 H 1.09000 * 117.49624 * 214.97773 * 23 9 7 33 33 H 1.08996 * 117.49557 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 1.4001 5 1 3.5467 1.4400 -0.7000 6 1 1.4467 2.6526 -0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0782 -1.1978 0.1155 9 6 1.2596 -2.4941 -0.1628 10 6 0.6775 -3.0861 1.1223 11 8 1.7459 -3.3074 2.0804 12 6 1.4154 -3.9187 3.2347 13 8 0.2661 -4.2579 3.4350 14 6 2.4496 -4.1772 4.2552 15 6 2.2566 -4.8005 5.5112 16 6 3.4769 -4.8212 6.0963 17 7 4.3413 -4.2356 5.2398 18 6 5.7724 -4.0481 5.4913 19 9 5.9457 -3.2626 6.6358 20 9 6.3790 -5.2939 5.6845 21 7 3.7284 -3.8662 4.1729 22 6 1.7682 -3.4720 -1.2240 23 6 0.4681 -2.6980 -1.4563 24 1 -0.4851 -0.8372 -0.0675 25 1 -0.0510 -2.3936 1.5439 26 1 0.1894 -4.0343 0.8969 27 1 1.3309 -5.1818 5.9164 28 1 3.7143 -5.2259 7.0690 29 1 6.2295 -3.5505 4.6360 30 1 2.6418 -3.1752 -1.8044 31 1 1.6878 -4.5370 -1.0068 32 1 -0.4671 -3.2542 -1.3917 33 1 0.4859 -1.8917 -2.1895 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776095129.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:26 Heat of formation + Delta-G solvation = -89.292034 kcal Electronic energy + Delta-G solvation = -22097.841575 eV Core-core repulsion = 18183.092617 eV Total energy + Delta-G solvation = -3914.748959 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.50277 -48.57929 -43.89922 -41.29610 -38.86677 -37.15260 -34.20232 -33.98858 -32.14606 -29.27475 -27.70305 -26.89602 -24.84848 -23.15233 -22.81636 -21.60704 -21.51344 -19.82868 -19.09603 -18.89618 -18.81310 -18.42267 -17.59805 -17.49680 -16.41837 -15.96955 -15.63840 -15.46383 -15.34964 -15.05044 -14.89649 -14.76806 -14.60597 -14.40623 -14.00379 -13.80672 -13.22504 -12.90063 -12.68062 -12.30533 -12.28093 -12.06268 -11.93601 -11.84008 -11.48363 -10.92381 -10.53879 -10.49000 -10.45679 -10.37743 -8.56243 -6.28887 -0.04099 0.54842 0.79620 1.53430 1.57443 1.61609 1.79664 1.89328 2.38999 2.57750 2.93032 3.18612 3.19914 3.44727 3.44899 3.59824 3.89334 3.94964 4.17664 4.24738 4.37289 4.40975 4.44578 4.60799 4.78918 4.94882 4.96588 5.15876 5.32605 5.39723 5.42280 6.13362 6.22644 6.31373 6.64773 6.71093 7.50858 8.84214 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.016886 B = 0.004536 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.756792 B = 6171.232288 C = 6953.344912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.020 4.020 3 Si 1.111 2.889 4 H -0.281 1.281 5 H -0.270 1.270 6 H -0.282 1.282 7 C -0.571 4.571 8 H 0.043 0.957 9 C -0.025 4.025 10 C 0.121 3.879 11 O -0.330 6.330 12 C 0.541 3.459 13 O -0.528 6.528 14 C -0.003 4.003 15 C -0.173 4.173 16 C 0.017 3.983 17 N -0.344 5.344 18 C 0.499 3.501 19 F -0.173 7.173 20 F -0.171 7.171 21 N -0.238 5.238 22 C -0.166 4.166 23 C -0.161 4.161 24 H 0.264 0.736 25 H 0.040 0.960 26 H 0.062 0.938 27 H 0.188 0.812 28 H 0.236 0.764 29 H 0.202 0.798 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.553 -10.500 12.777 20.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.220 4.220 3 Si 0.934 3.066 4 H -0.207 1.207 5 H -0.195 1.195 6 H -0.207 1.207 7 C -0.608 4.608 8 H 0.061 0.939 9 C -0.025 4.025 10 C 0.047 3.953 11 O -0.244 6.244 12 C 0.384 3.616 13 O -0.416 6.416 14 C -0.163 4.163 15 C -0.199 4.199 16 C -0.122 4.122 17 N -0.143 5.143 18 C 0.368 3.632 19 F -0.154 7.154 20 F -0.153 7.153 21 N -0.073 5.073 22 C -0.203 4.203 23 C -0.198 4.198 24 H 0.075 0.925 25 H 0.058 0.942 26 H 0.080 0.920 27 H 0.205 0.795 28 H 0.252 0.748 29 H 0.218 0.782 30 H 0.104 0.896 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.969 -8.444 12.201 19.064 hybrid contribution -0.916 -2.017 0.479 2.266 sum 11.052 -10.461 12.680 19.808 Atomic orbital electron populations 1.70831 1.07584 1.30952 1.47445 1.27077 0.96636 1.05671 0.92611 0.83010 0.74460 0.71796 0.77368 1.20692 1.19491 1.20713 1.21444 0.94125 0.90893 1.54370 0.93894 1.19155 1.01398 0.96301 0.85656 1.22691 0.86654 0.97974 0.87962 1.86694 1.41929 1.69420 1.26392 1.20121 0.86288 0.74080 0.81112 1.90790 1.20817 1.50759 1.79258 1.20987 0.90131 1.08412 0.96755 1.22152 1.00717 1.04840 0.92240 1.23675 0.88356 1.00539 0.99630 1.47069 1.10522 1.43817 1.12859 1.21619 0.74857 0.77653 0.89108 1.93160 1.94020 1.73755 1.54477 1.93163 1.81360 1.44519 1.96218 1.73723 1.07261 1.17947 1.08381 1.22941 0.97197 0.96362 1.03827 1.22744 0.94921 1.02173 0.99978 0.92548 0.94152 0.92019 0.79469 0.74800 0.78213 0.89559 0.88733 0.89174 0.90757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.97 13.57 21.45 0.29 -55.68 16 2 C -0.02 -1.16 5.39 84.66 0.46 -0.70 16 3 Si 1.11 50.68 29.91 68.60 2.05 52.73 16 4 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 5 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 7 C -0.57 -32.25 8.64 25.60 0.22 -32.03 16 8 H 0.04 2.48 7.82 -2.91 -0.02 2.45 16 9 C -0.02 -1.24 1.20 -52.93 -0.06 -1.30 16 10 C 0.12 5.88 5.31 71.98 0.38 6.26 16 11 O -0.33 -15.69 10.04 -56.42 -0.57 -16.26 16 12 C 0.54 22.71 7.97 70.29 0.56 23.27 16 13 O -0.53 -23.29 16.66 19.85 0.33 -22.96 16 14 C 0.00 -0.10 7.17 42.42 0.30 0.20 16 15 C -0.17 -4.19 10.81 22.42 0.24 -3.95 16 16 C 0.02 0.31 11.33 83.53 0.95 1.26 16 17 N -0.34 -7.44 3.56 -364.69 -1.30 -8.74 16 18 C 0.50 6.85 6.24 127.77 0.80 7.65 16 19 F -0.17 -2.50 17.46 44.97 0.79 -1.72 16 20 F -0.17 -2.33 17.46 44.97 0.79 -1.54 16 21 N -0.24 -7.40 11.99 -48.22 -0.58 -7.98 16 22 C -0.17 -7.06 9.94 30.62 0.30 -6.75 16 23 C -0.16 -7.24 8.75 30.62 0.27 -6.98 16 24 H 0.26 15.81 6.15 -92.71 -0.57 15.24 16 25 H 0.04 2.15 7.76 -2.39 -0.02 2.13 16 26 H 0.06 2.71 8.01 -2.39 -0.02 2.70 16 27 H 0.19 3.78 8.06 -2.91 -0.02 3.75 16 28 H 0.24 1.85 8.06 -2.91 -0.02 1.82 16 29 H 0.20 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.09 3.61 8.14 -2.39 -0.02 3.59 16 31 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 32 H 0.09 3.65 8.14 -2.39 -0.02 3.63 16 33 H 0.07 3.57 8.14 -2.39 -0.02 3.55 16 Total: -1.00 -72.98 311.27 7.56 -65.42 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: 1.35 Total: 9.79 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: 4.42 Total: -13.08 kcal Atomic # 7 Polarization: -70.81 SS G_CDS: -1.59 Total: -72.40 kcal Atomic # 8 Polarization: -38.98 SS G_CDS: -0.24 Total: -39.21 kcal Atomic # 9 Polarization: -4.83 SS G_CDS: 1.57 Total: -3.26 kcal Atomic # 14 Polarization: 50.68 SS G_CDS: 2.05 Total: 52.73 kcal Total: -72.98 7.56 -65.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776095129.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.872 kcal (2) G-P(sol) polarization free energy of solvation -72.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds