Wall clock time and date at job start Tue Mar 31 2020 06:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35166 * 125.61139 * 2 1 4 4 C 1.40307 * 107.12691 * 180.02562 * 3 2 1 5 5 C 1.36636 * 106.70583 * 0.02562 * 4 3 2 6 6 C 1.46470 * 125.99898 * 179.97438 * 5 4 3 7 7 O 1.21625 * 119.99862 * 359.97438 * 6 5 4 8 8 O 1.34897 * 119.99914 * 179.97438 * 6 5 4 9 9 C 1.45203 * 116.99987 * 179.97438 * 8 6 5 10 10 C 1.50697 * 109.47319 * 179.97438 * 9 8 6 11 11 C 1.38633 * 119.74949 * 269.72858 * 10 9 8 12 12 C 1.37617 * 120.24944 * 179.72576 * 11 10 9 13 13 C 1.40718 * 119.74164 * 0.56005 * 12 11 10 14 14 C 1.41401 * 120.24393 * 179.68489 * 13 12 11 15 15 H 1.07999 * 119.99852 * 204.41479 * 14 13 12 16 16 C 1.39940 * 119.99711 * 24.41047 * 14 13 12 17 17 N 1.30825 * 120.00049 * 17.84943 * 16 14 13 18 18 Si 1.86804 * 119.99952 * 197.84493 * 16 14 13 19 19 H 1.48502 * 109.46772 * 60.00290 * 18 16 14 20 20 H 1.48499 * 109.47160 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46944 * 300.00457 * 18 16 14 22 22 C 1.40710 * 119.51303 * 359.71722 * 13 12 11 23 23 C 1.37618 * 119.74430 * 359.97438 * 22 13 12 24 24 O 1.33917 * 125.60879 * 180.32846 * 2 1 3 25 25 H 1.09000 * 109.47151 * 90.00160 * 1 2 3 26 26 H 1.08995 * 109.47334 * 209.99668 * 1 2 3 27 27 H 1.08993 * 109.47084 * 329.99868 * 1 2 3 28 28 H 1.08001 * 126.43227 * 0.05633 * 3 2 1 29 29 H 1.08003 * 126.65027 * 179.97438 * 4 3 2 30 30 H 1.09005 * 109.47424 * 59.99309 * 9 8 6 31 31 H 1.09004 * 109.46948 * 299.99798 * 9 8 6 32 32 H 1.08007 * 119.87369 * 359.96917 * 11 10 9 33 33 H 1.07997 * 120.13095 * 180.27639 * 12 11 10 34 34 H 0.97006 * 119.99615 * 179.97438 * 17 16 14 35 35 H 1.08003 * 120.13315 * 179.97438 * 22 13 12 36 36 H 1.08005 * 119.87795 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2941 1.0989 0.0000 4 6 3.6248 0.6540 -0.0006 5 6 3.5823 -0.7117 -0.0015 6 6 4.7400 -1.6089 -0.0029 7 8 5.8659 -1.1489 -0.0038 8 8 4.5575 -2.9455 -0.0032 9 6 5.7501 -3.7737 -0.0052 10 6 5.3523 -5.2273 -0.0046 11 6 5.1782 -5.8923 1.1993 12 6 4.8096 -7.2181 1.2119 13 6 4.6208 -7.9018 -0.0035 14 6 4.2485 -9.2659 -0.0030 15 1 4.4778 -9.8886 -0.8551 16 6 3.5830 -9.8091 1.1018 17 7 2.9985 -9.0200 1.9662 18 14 3.5293 -11.6608 1.3421 19 1 4.9136 -12.1844 1.4641 20 1 2.7690 -11.9777 2.5777 21 1 2.8622 -12.2922 0.1752 22 6 4.8060 -7.2182 -1.2194 23 6 5.1685 -5.8907 -1.2079 24 8 2.2868 -1.0887 -0.0062 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5138 28 1 1.9611 2.1263 0.0009 29 1 4.5109 1.2714 -0.0011 30 1 6.3430 -3.5592 0.8840 31 1 6.3404 -3.5586 -0.8960 32 1 5.3287 -5.3668 2.1308 33 1 4.6701 -7.7331 2.1508 34 1 2.5368 -9.3966 2.7317 35 1 4.6642 -7.7332 -2.1580 36 1 5.3108 -5.3637 -2.1399 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776111681.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:48 Heat of formation + Delta-G solvation = -59.473268 kcal Electronic energy + Delta-G solvation = -20866.869289 eV Core-core repulsion = 17475.350148 eV Total energy + Delta-G solvation = -3391.519142 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.81703 -39.88169 -37.67690 -36.12966 -33.88373 -33.42813 -32.22898 -30.81601 -29.37094 -28.07122 -26.85665 -24.06301 -22.67620 -21.72406 -21.08697 -20.39019 -20.05533 -18.25924 -17.39137 -16.73556 -16.72095 -15.69656 -15.53493 -15.28749 -14.42996 -13.90824 -13.75070 -13.50861 -13.42138 -13.21513 -13.11595 -12.83098 -12.41511 -12.38305 -12.15209 -12.02412 -11.74037 -11.17666 -11.01219 -10.93760 -10.59336 -10.44929 -10.21887 -10.17630 -9.71945 -9.46827 -9.22336 -8.69034 -7.56391 -7.45491 -6.86622 -4.46741 0.84032 2.11912 2.26085 2.63165 2.98348 2.99228 3.00934 3.02669 3.05830 3.41106 3.85461 4.42558 4.53718 4.71041 4.93272 5.12653 5.17337 5.36927 5.43195 5.60340 5.61695 5.65129 5.69329 5.78205 6.05596 6.17799 6.25160 6.31587 6.66647 6.78860 6.87381 6.97298 7.18360 7.26620 7.51736 7.73368 7.92925 7.95493 8.01123 8.19203 8.53682 8.78291 8.86772 10.07007 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.022755 B = 0.003263 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.223984 B = 8579.301577 C = 9357.991540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.027 3.973 3 C -0.230 4.230 4 C -0.113 4.113 5 C -0.059 4.059 6 C 0.544 3.456 7 O -0.500 6.500 8 O -0.338 6.338 9 C 0.135 3.865 10 C -0.238 4.238 11 C -0.074 4.074 12 C -0.171 4.171 13 C 0.119 3.881 14 C -0.456 4.456 15 H 0.080 0.920 16 C 0.075 3.925 17 N -0.784 5.784 18 Si 0.911 3.089 19 H -0.262 1.262 20 H -0.277 1.277 21 H -0.264 1.264 22 C -0.230 4.230 23 C -0.062 4.062 24 O -0.144 6.144 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.158 0.842 29 H 0.163 0.837 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.120 0.880 34 H 0.283 0.717 35 H 0.095 0.905 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.022 14.254 -1.284 14.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.026 4.026 3 C -0.249 4.249 4 C -0.132 4.132 5 C -0.109 4.109 6 C 0.389 3.611 7 O -0.391 6.391 8 O -0.254 6.254 9 C 0.064 3.936 10 C -0.239 4.239 11 C -0.093 4.093 12 C -0.190 4.190 13 C 0.117 3.883 14 C -0.485 4.485 15 H 0.098 0.902 16 C -0.144 4.144 17 N -0.409 5.409 18 Si 0.735 3.265 19 H -0.187 1.187 20 H -0.202 1.202 21 H -0.189 1.189 22 C -0.250 4.250 23 C -0.080 4.080 24 O -0.039 6.039 25 H 0.106 0.894 26 H 0.102 0.898 27 H 0.111 0.889 28 H 0.176 0.824 29 H 0.180 0.820 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.107 0.893 33 H 0.138 0.862 34 H 0.094 0.906 35 H 0.113 0.887 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.914 14.000 -1.066 14.576 hybrid contribution 0.036 -0.583 0.170 0.608 sum -3.878 13.417 -0.896 13.995 Atomic orbital electron populations 1.20454 0.84399 1.04706 1.04157 1.22982 0.94602 0.84170 1.00894 1.21560 0.92066 0.99844 1.11394 1.21943 0.98914 0.92283 1.00107 1.20995 0.81507 0.92898 1.15490 1.19309 0.85963 0.82405 0.73435 1.90899 1.22956 1.77894 1.47388 1.86918 1.40731 1.15571 1.82143 1.21852 0.83249 0.87316 1.01200 1.18657 1.19679 0.91381 0.94213 1.20546 0.98490 0.95173 0.95071 1.21290 1.05074 0.93805 0.98832 1.17684 0.86901 0.92799 0.90953 1.19656 1.31999 0.94946 1.01888 0.90168 1.25978 0.92915 1.00774 0.94746 1.69827 1.22700 1.37700 1.10625 0.86319 0.79529 0.82076 0.78568 1.18688 1.20221 1.18886 1.20958 1.12642 0.94249 0.97136 1.20399 0.97768 0.94689 0.95193 1.84171 1.15653 1.34405 1.69632 0.89368 0.89759 0.88877 0.82436 0.81962 0.91665 0.91723 0.89272 0.86208 0.90554 0.88682 0.89251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.41 36.01 0.37 -0.19 16 2 C 0.03 0.30 7.31 -35.40 -0.26 0.04 16 3 C -0.23 -2.38 10.77 -39.90 -0.43 -2.81 16 4 C -0.11 -1.43 10.62 -39.38 -0.42 -1.84 16 5 C -0.06 -0.93 7.18 -36.85 -0.26 -1.19 16 6 C 0.54 9.87 7.93 34.05 0.27 10.14 16 7 O -0.50 -9.46 16.66 -19.36 -0.32 -9.78 16 8 O -0.34 -6.81 10.22 -42.48 -0.43 -7.25 16 9 C 0.14 2.67 5.59 36.00 0.20 2.87 16 10 C -0.24 -5.38 5.54 -104.33 -0.58 -5.96 16 11 C -0.07 -1.76 9.67 -39.66 -0.38 -2.14 16 12 C -0.17 -4.42 8.70 -38.87 -0.34 -4.76 16 13 C 0.12 3.16 5.57 -106.82 -0.60 2.56 16 14 C -0.46 -11.88 9.05 -37.74 -0.34 -12.22 16 15 H 0.08 1.99 7.91 -52.49 -0.42 1.57 16 16 C 0.08 1.84 5.14 -17.34 -0.09 1.75 16 17 N -0.78 -19.92 10.95 55.55 0.61 -19.31 16 18 Si 0.91 18.18 29.60 -169.99 -5.03 13.15 16 19 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 20 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 21 H -0.26 -5.21 7.11 56.52 0.40 -4.80 16 22 C -0.23 -5.65 9.80 -38.88 -0.38 -6.03 16 23 C -0.06 -1.42 9.67 -39.66 -0.38 -1.80 16 24 O -0.14 -2.23 10.67 4.73 0.05 -2.17 16 25 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 29 H 0.16 1.76 8.06 -52.48 -0.42 1.34 16 30 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 31 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 32 H 0.09 1.92 8.06 -52.48 -0.42 1.50 16 33 H 0.12 3.17 6.16 -52.49 -0.32 2.85 16 34 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 35 H 0.09 2.18 8.06 -52.48 -0.42 1.75 16 36 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 LS Contribution 325.60 15.07 4.91 4.91 Total: -1.00 -29.61 325.60 -7.93 -37.55 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -4.09 Total: 4.50 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: -3.62 Total: -21.58 kcal Atomic # 7 Polarization: -19.92 SS G_CDS: 0.61 Total: -19.31 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.71 Total: -19.20 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.15 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.61 -7.93 -37.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776111681.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.928 kcal (2) G-P(sol) polarization free energy of solvation -29.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds