Wall clock time and date at job start Tue Mar 31 2020 06:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35166 * 125.61139 * 2 1 4 4 C 1.40307 * 107.12691 * 180.02562 * 3 2 1 5 5 C 1.36636 * 106.70583 * 0.02562 * 4 3 2 6 6 C 1.46470 * 125.99898 * 179.97438 * 5 4 3 7 7 O 1.21625 * 119.99862 * 359.97438 * 6 5 4 8 8 O 1.34897 * 119.99914 * 179.97438 * 6 5 4 9 9 C 1.45203 * 116.99987 * 179.97438 * 8 6 5 10 10 C 1.50697 * 109.47319 * 179.97438 * 9 8 6 11 11 C 1.38633 * 119.74949 * 269.72858 * 10 9 8 12 12 C 1.37617 * 120.24944 * 179.72576 * 11 10 9 13 13 C 1.40718 * 119.74164 * 0.56005 * 12 11 10 14 14 C 1.41401 * 120.24393 * 179.68489 * 13 12 11 15 15 H 1.07999 * 119.99852 * 204.41479 * 14 13 12 16 16 C 1.39940 * 119.99711 * 24.41047 * 14 13 12 17 17 N 1.30825 * 120.00049 * 17.84943 * 16 14 13 18 18 Si 1.86804 * 119.99952 * 197.84493 * 16 14 13 19 19 H 1.48502 * 109.46772 * 60.00290 * 18 16 14 20 20 H 1.48499 * 109.47160 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46944 * 300.00457 * 18 16 14 22 22 C 1.40710 * 119.51303 * 359.71722 * 13 12 11 23 23 C 1.37618 * 119.74430 * 359.97438 * 22 13 12 24 24 O 1.33917 * 125.60879 * 180.32846 * 2 1 3 25 25 H 1.09000 * 109.47151 * 90.00160 * 1 2 3 26 26 H 1.08995 * 109.47334 * 209.99668 * 1 2 3 27 27 H 1.08993 * 109.47084 * 329.99868 * 1 2 3 28 28 H 1.08001 * 126.43227 * 0.05633 * 3 2 1 29 29 H 1.08003 * 126.65027 * 179.97438 * 4 3 2 30 30 H 1.09005 * 109.47424 * 59.99309 * 9 8 6 31 31 H 1.09004 * 109.46948 * 299.99798 * 9 8 6 32 32 H 1.08007 * 119.87369 * 359.96917 * 11 10 9 33 33 H 1.07997 * 120.13095 * 180.27639 * 12 11 10 34 34 H 0.97006 * 119.99615 * 179.97438 * 17 16 14 35 35 H 1.08003 * 120.13315 * 179.97438 * 22 13 12 36 36 H 1.08005 * 119.87795 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2941 1.0989 0.0000 4 6 3.6248 0.6540 -0.0006 5 6 3.5823 -0.7117 -0.0015 6 6 4.7400 -1.6089 -0.0029 7 8 5.8659 -1.1489 -0.0038 8 8 4.5575 -2.9455 -0.0032 9 6 5.7501 -3.7737 -0.0052 10 6 5.3523 -5.2273 -0.0046 11 6 5.1782 -5.8923 1.1993 12 6 4.8096 -7.2181 1.2119 13 6 4.6208 -7.9018 -0.0035 14 6 4.2485 -9.2659 -0.0030 15 1 4.4778 -9.8886 -0.8551 16 6 3.5830 -9.8091 1.1018 17 7 2.9985 -9.0200 1.9662 18 14 3.5293 -11.6608 1.3421 19 1 4.9136 -12.1844 1.4641 20 1 2.7690 -11.9777 2.5777 21 1 2.8622 -12.2922 0.1752 22 6 4.8060 -7.2182 -1.2194 23 6 5.1685 -5.8907 -1.2079 24 8 2.2868 -1.0887 -0.0062 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5138 28 1 1.9611 2.1263 0.0009 29 1 4.5109 1.2714 -0.0011 30 1 6.3430 -3.5592 0.8840 31 1 6.3404 -3.5586 -0.8960 32 1 5.3287 -5.3668 2.1308 33 1 4.6701 -7.7331 2.1508 34 1 2.5368 -9.3966 2.7317 35 1 4.6642 -7.7332 -2.1580 36 1 5.3108 -5.3637 -2.1399 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776111681.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:47 Heat of formation + Delta-G solvation = -73.981212 kcal Electronic energy + Delta-G solvation = -20867.498401 eV Core-core repulsion = 17475.350148 eV Total energy + Delta-G solvation = -3392.148253 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.81299 -41.32532 -39.50376 -37.64576 -35.71946 -34.36886 -33.14522 -32.57001 -31.26574 -29.41916 -28.22844 -25.70862 -23.91094 -22.98494 -22.70801 -21.89705 -21.47210 -19.51316 -19.28981 -18.17789 -17.93088 -17.26158 -16.91967 -16.55207 -15.94859 -15.65809 -15.47270 -14.64972 -14.30443 -14.18602 -14.08038 -14.03201 -13.94135 -13.87231 -13.71706 -13.56042 -12.88058 -12.83295 -12.72677 -12.63963 -12.20042 -12.01889 -11.78360 -11.53152 -11.32275 -11.14006 -11.06315 -9.64015 -9.47515 -9.37117 -8.70622 -6.42355 -0.28236 0.65994 1.08112 1.20241 1.32807 1.38629 1.50179 1.55185 1.76622 2.04569 2.18703 2.70257 3.53172 3.69321 3.82858 3.87191 4.02196 4.06546 4.38480 4.44112 4.46704 4.51254 4.52541 4.64465 4.70378 4.87868 4.97350 5.08365 5.09376 5.21872 5.27935 5.36817 5.40648 5.62142 5.81936 5.85074 6.02639 6.10906 6.28758 6.53841 6.61240 6.85705 6.94223 8.25920 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.022755 B = 0.003263 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.223984 B = 8579.301577 C = 9357.991540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.030 3.970 3 C -0.225 4.225 4 C -0.092 4.092 5 C -0.110 4.110 6 C 0.545 3.455 7 O -0.517 6.517 8 O -0.358 6.358 9 C 0.139 3.861 10 C -0.236 4.236 11 C -0.080 4.080 12 C -0.194 4.194 13 C 0.089 3.911 14 C -0.492 4.492 15 H 0.082 0.918 16 C 0.035 3.965 17 N -0.818 5.818 18 Si 0.987 3.013 19 H -0.259 1.259 20 H -0.266 1.266 21 H -0.258 1.258 22 C -0.245 4.245 23 C -0.064 4.064 24 O -0.176 6.176 25 H 0.105 0.895 26 H 0.079 0.921 27 H 0.126 0.874 28 H 0.199 0.801 29 H 0.179 0.821 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.291 0.709 35 H 0.104 0.896 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.050 16.020 -1.541 16.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.023 4.023 3 C -0.243 4.243 4 C -0.111 4.111 5 C -0.160 4.160 6 C 0.392 3.608 7 O -0.409 6.409 8 O -0.274 6.274 9 C 0.068 3.932 10 C -0.237 4.237 11 C -0.099 4.099 12 C -0.213 4.213 13 C 0.086 3.914 14 C -0.521 4.521 15 H 0.100 0.900 16 C -0.182 4.182 17 N -0.443 5.443 18 Si 0.807 3.193 19 H -0.184 1.184 20 H -0.191 1.191 21 H -0.182 1.182 22 C -0.265 4.265 23 C -0.083 4.083 24 O -0.073 6.073 25 H 0.123 0.877 26 H 0.098 0.902 27 H 0.144 0.856 28 H 0.216 0.784 29 H 0.196 0.804 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.102 0.898 35 H 0.122 0.878 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.941 15.793 -1.330 16.601 hybrid contribution 0.267 -0.879 0.222 0.946 sum -4.673 14.914 -1.108 15.668 Atomic orbital electron populations 1.20740 0.81384 1.06080 1.05605 1.23998 0.96282 0.83565 0.98409 1.22025 0.90542 1.01443 1.10296 1.22349 1.00753 0.91047 0.96962 1.20810 0.81305 0.93450 1.20385 1.19601 0.86869 0.81623 0.72743 1.90867 1.23733 1.77793 1.48554 1.86858 1.40645 1.17057 1.82883 1.21739 0.83342 0.85658 1.02508 1.18981 1.17887 0.93104 0.93706 1.20787 0.97958 0.94631 0.96491 1.21269 1.06909 0.94841 0.98304 1.18047 0.87830 0.93664 0.91815 1.19934 1.33622 0.95336 1.03202 0.90016 1.26865 0.91768 1.05708 0.93824 1.69879 1.23202 1.39932 1.11238 0.85182 0.79643 0.75585 0.78905 1.18357 1.19073 1.18169 1.21177 1.13123 0.95154 0.97012 1.20721 0.96761 0.94214 0.96565 1.84141 1.15897 1.36526 1.70696 0.87690 0.90235 0.85612 0.78420 0.80357 0.90701 0.90170 0.87627 0.87645 0.89797 0.87750 0.86445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 10.41 71.24 0.74 -0.15 16 2 C 0.03 0.61 7.31 24.98 0.18 0.79 16 3 C -0.22 -3.88 10.77 22.06 0.24 -3.65 16 4 C -0.09 -2.13 10.62 22.40 0.24 -1.89 16 5 C -0.11 -3.44 7.18 24.04 0.17 -3.27 16 6 C 0.54 19.83 7.93 69.97 0.55 20.38 16 7 O -0.52 -19.44 16.66 19.43 0.32 -19.11 16 8 O -0.36 -14.53 10.22 -56.74 -0.58 -15.11 16 9 C 0.14 5.43 5.59 71.23 0.40 5.83 16 10 C -0.24 -10.68 5.54 -19.68 -0.11 -10.79 16 11 C -0.08 -3.89 9.67 22.22 0.21 -3.67 16 12 C -0.19 -10.44 8.70 22.73 0.20 -10.24 16 13 C 0.09 4.88 5.57 -21.29 -0.12 4.76 16 14 C -0.49 -26.48 9.05 23.46 0.21 -26.27 16 15 H 0.08 4.18 7.91 -2.91 -0.02 4.16 16 16 C 0.03 1.73 5.14 85.26 0.44 2.17 16 17 N -0.82 -42.68 10.95 21.83 0.24 -42.44 16 18 Si 0.99 37.53 29.60 68.60 2.03 39.56 16 19 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 20 H -0.27 -9.56 7.11 99.48 0.71 -8.85 16 21 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 22 C -0.25 -12.27 9.80 22.73 0.22 -12.05 16 23 C -0.06 -2.94 9.67 22.22 0.21 -2.72 16 24 O -0.18 -5.37 10.67 -4.91 -0.05 -5.43 16 25 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.20 1.72 8.06 -2.91 -0.02 1.70 16 29 H 0.18 3.43 8.06 -2.91 -0.02 3.41 16 30 H 0.07 2.74 8.07 -2.38 -0.02 2.72 16 31 H 0.08 2.85 8.08 -2.39 -0.02 2.83 16 32 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 33 H 0.11 5.87 6.16 -2.91 -0.02 5.85 16 34 H 0.29 13.68 8.30 -92.70 -0.77 12.91 16 35 H 0.10 4.87 8.06 -2.91 -0.02 4.84 16 36 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 Total: -1.00 -66.74 325.60 6.86 -59.89 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: 1.10 Total: 23.42 kcal Atomic # 6 Polarization: -44.57 SS G_CDS: 3.80 Total: -40.77 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: 0.24 Total: -42.44 kcal Atomic # 8 Polarization: -39.35 SS G_CDS: -0.31 Total: -39.65 kcal Atomic # 14 Polarization: 37.53 SS G_CDS: 2.03 Total: 39.56 kcal Total: -66.74 6.86 -59.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776111681.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.095 kcal (2) G-P(sol) polarization free energy of solvation -66.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds