Wall clock time and date at job start Tue Mar 31 2020 06:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.33629 * 125.80739 * 2 1 4 4 C 1.34228 * 110.92287 * 180.28651 * 3 2 1 5 5 C 1.34160 * 109.14163 * 359.73335 * 4 3 2 6 6 C 1.36499 * 125.80735 * 179.81883 * 2 1 3 7 7 C 1.47226 * 127.20178 * 359.97438 * 6 2 1 8 8 O 1.21540 * 119.99918 * 359.71444 * 7 6 2 9 9 O 1.34775 * 120.00119 * 179.71021 * 7 6 2 10 10 C 1.45202 * 117.00036 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.47010 * 180.02562 * 10 9 7 12 12 C 1.38634 * 119.74914 * 269.72756 * 11 10 9 13 13 C 1.37619 * 120.24942 * 179.72155 * 12 11 10 14 14 C 1.40717 * 119.73953 * 0.57349 * 13 12 11 15 15 C 1.41400 * 120.23665 * 179.68462 * 14 13 12 16 16 H 1.08007 * 119.99684 * 155.31480 * 15 14 13 17 17 C 1.39939 * 120.00333 * 335.30310 * 15 14 13 18 18 N 1.30826 * 120.00025 * 342.23859 * 17 15 14 19 19 Si 1.86800 * 120.00117 * 162.23840 * 17 15 14 20 20 H 1.48494 * 109.47119 * 94.66408 * 19 17 15 21 21 H 1.48501 * 109.47377 * 214.66748 * 19 17 15 22 22 H 1.48501 * 109.47174 * 334.66670 * 19 17 15 23 23 C 1.40711 * 119.51509 * 359.69926 * 14 13 12 24 24 C 1.37617 * 119.74404 * 0.02562 * 23 14 13 25 25 H 1.09003 * 109.46458 * 270.18571 * 1 2 3 26 26 H 1.08999 * 109.47059 * 30.18320 * 1 2 3 27 27 H 1.08999 * 109.46980 * 150.18645 * 1 2 3 28 28 H 1.07992 * 125.42885 * 179.72566 * 4 3 2 29 29 H 1.07997 * 127.02035 * 180.02562 * 5 4 3 30 30 H 1.08994 * 109.46999 * 300.00544 * 10 9 7 31 31 H 1.08996 * 109.46818 * 60.00279 * 10 9 7 32 32 H 1.08008 * 119.87481 * 359.97438 * 12 11 10 33 33 H 1.07995 * 120.12746 * 180.27730 * 13 12 11 34 34 H 0.97003 * 119.99697 * 179.97438 * 18 17 15 35 35 H 1.07997 * 120.12552 * 179.97438 * 23 14 13 36 36 H 1.07995 * 119.87428 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0837 0.0000 4 6 3.5860 0.7389 -0.0063 5 6 3.6856 -0.5990 -0.0047 6 6 2.3056 -1.1070 0.0035 7 6 1.8754 -2.5150 0.0085 8 8 0.6912 -2.7885 0.0151 9 8 2.7947 -3.5005 0.0056 10 6 2.2982 -4.8651 0.0114 11 6 3.4617 -5.8229 0.0078 12 6 3.9830 -6.2674 -1.1974 13 6 5.0490 -7.1376 -1.2128 14 6 5.6020 -7.5856 0.0011 15 6 6.6931 -8.4849 -0.0024 16 1 7.3626 -8.5250 0.8442 17 6 6.9054 -9.3233 -1.1026 18 7 5.9387 -9.5379 -1.9576 19 14 8.5690 -10.1359 -1.3505 20 1 8.5482 -11.4972 -0.7575 21 1 8.8609 -10.2333 -2.8032 22 1 9.6205 -9.3234 -0.6877 23 6 5.0611 -7.1322 1.2184 24 6 3.9986 -6.2576 1.2097 25 1 -0.3632 0.0033 1.0277 26 1 -0.3633 0.8883 -0.5167 27 1 -0.3633 -0.8916 -0.5109 28 1 4.4171 1.4286 -0.0118 29 1 4.5938 -1.1834 -0.0082 30 1 1.6960 -5.0288 0.9050 31 1 1.6863 -5.0328 -0.8748 32 1 3.5535 -5.9263 -2.1279 33 1 5.4564 -7.4792 -2.1529 34 1 6.0860 -10.1187 -2.7205 35 1 5.4776 -7.4699 2.1558 36 1 3.5816 -5.9086 2.1427 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776112468.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:52 Heat of formation + Delta-G solvation = -61.942912 kcal Electronic energy + Delta-G solvation = -20917.243450 eV Core-core repulsion = 17525.617216 eV Total energy + Delta-G solvation = -3391.626233 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.71301 -39.78271 -37.66307 -36.01364 -33.86663 -33.19191 -32.05191 -30.77014 -29.36774 -27.66983 -26.83482 -24.34654 -23.15472 -21.46283 -21.07910 -20.03631 -19.68951 -17.98327 -17.38948 -16.65198 -16.58003 -15.76267 -15.69666 -15.29023 -14.54099 -14.07452 -13.75136 -13.71170 -13.35779 -13.16125 -12.96611 -12.72894 -12.41640 -12.34689 -12.02909 -11.91008 -11.54552 -11.25274 -11.11786 -10.64552 -10.61783 -10.26755 -10.13145 -9.94194 -9.69164 -9.46745 -9.21253 -8.75949 -7.55890 -7.45378 -6.87036 -4.46190 1.13757 1.92828 2.41167 2.65537 2.97100 3.00861 3.02813 3.08188 3.19631 3.44189 3.85765 4.36611 4.52382 4.70694 4.97352 5.11689 5.29244 5.47786 5.53719 5.61722 5.65848 5.69433 5.75486 5.93094 6.10991 6.20356 6.26272 6.32199 6.81517 6.86676 6.89435 6.97729 7.18542 7.26690 7.52035 7.74262 7.96004 8.01358 8.10655 8.19478 8.54016 8.78776 8.86989 10.07167 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.031627 B = 0.003010 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.104273 B = 9301.610735 C = 9686.137418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.080 3.920 3 O -0.175 6.175 4 C -0.050 4.050 5 C -0.162 4.162 6 C -0.229 4.229 7 C 0.533 3.467 8 O -0.523 6.523 9 O -0.342 6.342 10 C 0.137 3.863 11 C -0.235 4.235 12 C -0.075 4.075 13 C -0.170 4.170 14 C 0.119 3.881 15 C -0.457 4.457 16 H 0.080 0.920 17 C 0.075 3.925 18 N -0.786 5.786 19 Si 0.909 3.091 20 H -0.269 1.269 21 H -0.274 1.274 22 H -0.259 1.259 23 C -0.230 4.230 24 C -0.063 4.063 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.108 0.892 28 H 0.210 0.790 29 H 0.165 0.835 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.119 0.881 34 H 0.282 0.718 35 H 0.095 0.905 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.805 15.218 1.263 16.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.028 3.972 3 O -0.071 6.071 4 C -0.115 4.115 5 C -0.181 4.181 6 C -0.231 4.231 7 C 0.379 3.621 8 O -0.415 6.415 9 O -0.258 6.258 10 C 0.065 3.935 11 C -0.237 4.237 12 C -0.094 4.094 13 C -0.190 4.190 14 C 0.116 3.884 15 C -0.486 4.486 16 H 0.098 0.902 17 C -0.143 4.143 18 N -0.411 5.411 19 Si 0.733 3.267 20 H -0.195 1.195 21 H -0.199 1.199 22 H -0.183 1.183 23 C -0.250 4.250 24 C -0.082 4.082 25 H 0.108 0.892 26 H 0.098 0.902 27 H 0.127 0.873 28 H 0.227 0.773 29 H 0.183 0.817 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.107 0.893 33 H 0.137 0.863 34 H 0.093 0.907 35 H 0.113 0.887 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.285 15.221 1.049 16.146 hybrid contribution 0.898 -0.733 -0.173 1.172 sum -4.386 14.488 0.876 15.163 Atomic orbital electron populations 1.20643 0.83613 1.05193 1.04540 1.22809 0.94093 0.83073 0.97248 1.83764 1.17369 1.34566 1.71440 1.23893 0.83263 0.96465 1.07912 1.23034 0.97100 0.94114 1.03888 1.20404 0.94084 0.91247 1.17380 1.19975 0.84019 0.85529 0.72560 1.90772 1.18248 1.84805 1.47716 1.86779 1.39187 1.17212 1.82654 1.21738 0.95342 0.75408 1.01016 1.18662 1.04575 1.06267 0.94149 1.20543 0.96455 0.97276 0.95081 1.21290 0.98777 1.00084 0.98801 1.17684 0.90501 0.89247 0.90924 1.19669 1.09931 1.16630 1.02328 0.90183 1.25969 0.97999 0.95658 0.94715 1.69828 1.31722 1.28477 1.11058 0.86280 0.82224 0.79687 0.78481 1.19467 1.19928 1.18307 1.20949 1.00718 1.06198 0.97115 1.20388 0.95865 0.96703 0.95213 0.89151 0.90182 0.87312 0.77328 0.81722 0.92016 0.91930 0.89311 0.86288 0.90654 0.88713 0.89296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 9.89 36.01 0.36 -0.44 16 2 C 0.08 0.99 7.38 -34.94 -0.26 0.73 16 3 O -0.17 -1.96 10.52 7.68 0.08 -1.88 16 4 C -0.05 -0.49 12.03 29.30 0.35 -0.14 16 5 C -0.16 -2.04 11.05 -37.44 -0.41 -2.45 16 6 C -0.23 -3.36 6.32 -103.30 -0.65 -4.01 16 7 C 0.53 9.29 7.95 34.38 0.27 9.57 16 8 O -0.52 -9.53 14.64 -19.30 -0.28 -9.82 16 9 O -0.34 -6.58 10.12 -40.70 -0.41 -6.99 16 10 C 0.14 2.68 5.59 36.01 0.20 2.88 16 11 C -0.24 -5.27 5.54 -104.33 -0.58 -5.85 16 12 C -0.07 -1.76 9.67 -39.66 -0.38 -2.15 16 13 C -0.17 -4.38 8.70 -38.87 -0.34 -4.72 16 14 C 0.12 3.14 5.57 -106.82 -0.60 2.54 16 15 C -0.46 -11.86 9.05 -37.74 -0.34 -12.20 16 16 H 0.08 1.99 7.91 -52.48 -0.41 1.57 16 17 C 0.08 1.85 5.14 -17.34 -0.09 1.76 16 18 N -0.79 -19.86 10.97 55.55 0.61 -19.25 16 19 Si 0.91 18.13 29.59 -169.99 -5.03 13.10 16 20 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 21 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 22 H -0.26 -5.14 7.11 56.52 0.40 -4.73 16 23 C -0.23 -5.61 9.80 -38.88 -0.38 -5.99 16 24 C -0.06 -1.43 9.67 -39.66 -0.38 -1.81 16 25 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.11 1.19 6.49 -51.93 -0.34 0.85 16 28 H 0.21 1.15 8.06 -52.49 -0.42 0.72 16 29 H 0.17 1.97 8.06 -52.49 -0.42 1.55 16 30 H 0.06 1.15 8.07 -51.93 -0.42 0.73 16 31 H 0.06 1.18 8.07 -51.93 -0.42 0.76 16 32 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 33 H 0.12 3.14 6.18 -52.49 -0.32 2.82 16 34 H 0.28 6.45 8.30 -40.82 -0.34 6.12 16 35 H 0.09 2.16 8.06 -52.49 -0.42 1.73 16 36 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 LS Contribution 322.09 15.07 4.85 4.85 Total: -1.00 -29.27 322.09 -7.42 -36.69 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -4.01 Total: 5.58 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: -3.23 Total: -22.29 kcal Atomic # 7 Polarization: -19.86 SS G_CDS: 0.61 Total: -19.25 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.61 Total: -18.69 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.10 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.27 -7.42 -36.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776112468.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.251 kcal (2) G-P(sol) polarization free energy of solvation -29.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds