Wall clock time and date at job start Tue Mar 31 2020 06:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.33629 * 125.80739 * 2 1 4 4 C 1.34228 * 110.92287 * 180.28651 * 3 2 1 5 5 C 1.34160 * 109.14163 * 359.73335 * 4 3 2 6 6 C 1.36499 * 125.80735 * 179.81883 * 2 1 3 7 7 C 1.47226 * 127.20178 * 359.97438 * 6 2 1 8 8 O 1.21540 * 119.99918 * 359.71444 * 7 6 2 9 9 O 1.34775 * 120.00119 * 179.71021 * 7 6 2 10 10 C 1.45202 * 117.00036 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.47010 * 180.02562 * 10 9 7 12 12 C 1.38634 * 119.74914 * 269.72756 * 11 10 9 13 13 C 1.37619 * 120.24942 * 179.72155 * 12 11 10 14 14 C 1.40717 * 119.73953 * 0.57349 * 13 12 11 15 15 C 1.41400 * 120.23665 * 179.68462 * 14 13 12 16 16 H 1.08007 * 119.99684 * 155.31480 * 15 14 13 17 17 C 1.39939 * 120.00333 * 335.30310 * 15 14 13 18 18 N 1.30826 * 120.00025 * 342.23859 * 17 15 14 19 19 Si 1.86800 * 120.00117 * 162.23840 * 17 15 14 20 20 H 1.48494 * 109.47119 * 94.66408 * 19 17 15 21 21 H 1.48501 * 109.47377 * 214.66748 * 19 17 15 22 22 H 1.48501 * 109.47174 * 334.66670 * 19 17 15 23 23 C 1.40711 * 119.51509 * 359.69926 * 14 13 12 24 24 C 1.37617 * 119.74404 * 0.02562 * 23 14 13 25 25 H 1.09003 * 109.46458 * 270.18571 * 1 2 3 26 26 H 1.08999 * 109.47059 * 30.18320 * 1 2 3 27 27 H 1.08999 * 109.46980 * 150.18645 * 1 2 3 28 28 H 1.07992 * 125.42885 * 179.72566 * 4 3 2 29 29 H 1.07997 * 127.02035 * 180.02562 * 5 4 3 30 30 H 1.08994 * 109.46999 * 300.00544 * 10 9 7 31 31 H 1.08996 * 109.46818 * 60.00279 * 10 9 7 32 32 H 1.08008 * 119.87481 * 359.97438 * 12 11 10 33 33 H 1.07995 * 120.12746 * 180.27730 * 13 12 11 34 34 H 0.97003 * 119.99697 * 179.97438 * 18 17 15 35 35 H 1.07997 * 120.12552 * 179.97438 * 23 14 13 36 36 H 1.07995 * 119.87428 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0837 0.0000 4 6 3.5860 0.7389 -0.0063 5 6 3.6856 -0.5990 -0.0047 6 6 2.3056 -1.1070 0.0035 7 6 1.8754 -2.5150 0.0085 8 8 0.6912 -2.7885 0.0151 9 8 2.7947 -3.5005 0.0056 10 6 2.2982 -4.8651 0.0114 11 6 3.4617 -5.8229 0.0078 12 6 3.9830 -6.2674 -1.1974 13 6 5.0490 -7.1376 -1.2128 14 6 5.6020 -7.5856 0.0011 15 6 6.6931 -8.4849 -0.0024 16 1 7.3626 -8.5250 0.8442 17 6 6.9054 -9.3233 -1.1026 18 7 5.9387 -9.5379 -1.9576 19 14 8.5690 -10.1359 -1.3505 20 1 8.5482 -11.4972 -0.7575 21 1 8.8609 -10.2333 -2.8032 22 1 9.6205 -9.3234 -0.6877 23 6 5.0611 -7.1322 1.2184 24 6 3.9986 -6.2576 1.2097 25 1 -0.3632 0.0033 1.0277 26 1 -0.3633 0.8883 -0.5167 27 1 -0.3633 -0.8916 -0.5109 28 1 4.4171 1.4286 -0.0118 29 1 4.5938 -1.1834 -0.0082 30 1 1.6960 -5.0288 0.9050 31 1 1.6863 -5.0328 -0.8748 32 1 3.5535 -5.9263 -2.1279 33 1 5.4564 -7.4792 -2.1529 34 1 6.0860 -10.1187 -2.7205 35 1 5.4776 -7.4699 2.1558 36 1 3.5816 -5.9086 2.1427 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776112468.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:51 Heat of formation + Delta-G solvation = -76.042453 kcal Electronic energy + Delta-G solvation = -20917.854852 eV Core-core repulsion = 17525.617216 eV Total energy + Delta-G solvation = -3392.237635 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.62864 -41.19753 -39.47997 -37.49608 -35.69431 -34.18530 -32.91086 -32.55045 -31.25319 -29.18785 -27.99110 -25.89066 -24.50079 -22.97473 -22.51250 -21.82980 -20.77609 -19.28582 -19.07384 -17.98629 -17.65102 -17.26704 -16.97997 -16.78305 -15.95068 -15.64500 -15.44790 -15.08796 -14.39696 -14.22541 -14.02663 -13.94776 -13.87953 -13.82946 -13.77642 -13.28957 -13.05520 -12.78658 -12.75819 -12.42236 -12.22374 -11.70099 -11.69217 -11.46265 -11.31089 -11.04456 -10.94579 -9.64860 -9.45846 -9.35863 -8.70346 -6.40926 0.06982 0.70548 1.01898 1.09159 1.37958 1.41959 1.53724 1.70535 1.98228 2.04302 2.19169 2.71237 3.54879 3.64103 3.75491 3.87889 4.06818 4.08948 4.29101 4.44898 4.46001 4.52873 4.59731 4.64080 4.73958 4.83786 4.98514 5.10614 5.12863 5.28234 5.31614 5.37330 5.45902 5.63340 5.86251 5.94990 6.03924 6.12417 6.29996 6.62423 6.72764 6.87038 6.95351 8.26827 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.031627 B = 0.003010 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.104273 B = 9301.610735 C = 9686.137418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.093 3.907 3 O -0.170 6.170 4 C -0.023 4.023 5 C -0.193 4.193 6 C -0.269 4.269 7 C 0.531 3.469 8 O -0.537 6.537 9 O -0.355 6.355 10 C 0.142 3.858 11 C -0.231 4.231 12 C -0.080 4.080 13 C -0.193 4.193 14 C 0.089 3.911 15 C -0.493 4.493 16 H 0.080 0.920 17 C 0.035 3.965 18 N -0.818 5.818 19 Si 0.985 3.015 20 H -0.261 1.261 21 H -0.265 1.265 22 H -0.258 1.258 23 C -0.245 4.245 24 C -0.065 4.065 25 H 0.104 0.896 26 H 0.109 0.891 27 H 0.092 0.908 28 H 0.256 0.744 29 H 0.162 0.838 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.291 0.709 35 H 0.104 0.896 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.766 17.140 1.520 17.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.039 3.961 3 O -0.066 6.066 4 C -0.087 4.087 5 C -0.212 4.212 6 C -0.271 4.271 7 C 0.379 3.621 8 O -0.430 6.430 9 O -0.272 6.272 10 C 0.070 3.930 11 C -0.233 4.233 12 C -0.099 4.099 13 C -0.212 4.212 14 C 0.087 3.913 15 C -0.521 4.521 16 H 0.098 0.902 17 C -0.181 4.181 18 N -0.444 5.444 19 Si 0.805 3.195 20 H -0.186 1.186 21 H -0.190 1.190 22 H -0.181 1.181 23 C -0.264 4.264 24 C -0.083 4.083 25 H 0.122 0.878 26 H 0.128 0.872 27 H 0.111 0.889 28 H 0.272 0.728 29 H 0.180 0.820 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.102 0.898 35 H 0.122 0.878 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.263 17.162 1.313 17.999 hybrid contribution 0.765 -1.164 -0.229 1.412 sum -4.498 15.997 1.084 16.653 Atomic orbital electron populations 1.20752 0.81872 1.05816 1.05585 1.23208 0.95118 0.82585 0.95156 1.83821 1.17934 1.33933 1.70916 1.24683 0.83501 0.96153 1.04364 1.23136 0.96256 0.95494 1.06346 1.20472 0.95953 0.90200 1.20498 1.20390 0.83624 0.86153 0.71952 1.90753 1.18577 1.85096 1.48619 1.86733 1.39988 1.17174 1.83275 1.21570 0.94025 0.75473 1.01908 1.18965 1.04560 1.06104 0.93634 1.20769 0.95921 0.96703 0.96472 1.21258 1.00189 1.01520 0.98232 1.18040 0.91368 0.90136 0.91801 1.19930 1.10696 1.17909 1.03612 0.90156 1.26838 1.01641 0.95776 0.93834 1.69873 1.33666 1.29168 1.11654 0.85152 0.76998 0.78638 0.78712 1.18584 1.18964 1.18114 1.21163 1.01457 1.06812 0.96966 1.20698 0.95172 0.95874 0.96560 0.87757 0.87244 0.88919 0.72810 0.82025 0.90856 0.91379 0.87708 0.87768 0.89841 0.87815 0.86527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.42 9.89 71.24 0.70 -0.72 16 2 C 0.09 2.09 7.38 25.28 0.19 2.28 16 3 O -0.17 -3.28 10.52 4.55 0.05 -3.23 16 4 C -0.02 -0.37 12.03 66.89 0.80 0.43 16 5 C -0.19 -4.60 11.05 23.66 0.26 -4.34 16 6 C -0.27 -7.67 6.32 -19.01 -0.12 -7.79 16 7 C 0.53 18.36 7.95 70.18 0.56 18.91 16 8 O -0.54 -19.37 14.64 19.71 0.29 -19.08 16 9 O -0.35 -13.57 10.12 -56.86 -0.58 -14.14 16 10 C 0.14 5.48 5.59 71.24 0.40 5.88 16 11 C -0.23 -10.33 5.54 -19.68 -0.11 -10.44 16 12 C -0.08 -3.84 9.67 22.22 0.21 -3.62 16 13 C -0.19 -10.26 8.70 22.73 0.20 -10.06 16 14 C 0.09 4.84 5.57 -21.29 -0.12 4.72 16 15 C -0.49 -26.36 9.05 23.46 0.21 -26.15 16 16 H 0.08 4.11 7.91 -2.91 -0.02 4.09 16 17 C 0.04 1.75 5.14 85.25 0.44 2.19 16 18 N -0.82 -42.35 10.97 21.82 0.24 -42.11 16 19 Si 0.98 37.39 29.59 68.60 2.03 39.42 16 20 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 21 H -0.27 -9.58 7.11 99.48 0.71 -8.87 16 22 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 23 C -0.24 -12.11 9.80 22.73 0.22 -11.88 16 24 C -0.06 -2.91 9.67 22.22 0.21 -2.70 16 25 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.09 1.92 6.49 -2.39 -0.02 1.90 16 28 H 0.26 1.59 8.06 -2.91 -0.02 1.57 16 29 H 0.16 3.83 8.06 -2.91 -0.02 3.80 16 30 H 0.07 2.64 8.07 -2.39 -0.02 2.62 16 31 H 0.07 2.53 8.07 -2.39 -0.02 2.51 16 32 H 0.10 4.54 8.06 -2.91 -0.02 4.52 16 33 H 0.10 5.76 6.18 -2.91 -0.02 5.74 16 34 H 0.29 13.51 8.30 -92.71 -0.77 12.74 16 35 H 0.10 4.79 8.06 -2.91 -0.02 4.77 16 36 H 0.12 4.52 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -64.82 322.09 7.20 -57.62 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: 1.10 Total: 24.82 kcal Atomic # 6 Polarization: -47.36 SS G_CDS: 4.07 Total: -43.29 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: 0.24 Total: -42.11 kcal Atomic # 8 Polarization: -36.22 SS G_CDS: -0.24 Total: -36.46 kcal Atomic # 14 Polarization: 37.39 SS G_CDS: 2.03 Total: 39.42 kcal Total: -64.82 7.20 -57.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776112468.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.422 kcal (2) G-P(sol) polarization free energy of solvation -64.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds