Wall clock time and date at job start Tue Mar 31 2020 06:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34152 * 125.42962 * 2 1 4 4 C 1.47062 * 105.95128 * 180.02562 * 3 2 1 5 5 C 1.47227 * 127.19804 * 180.02562 * 4 3 2 6 6 O 1.21531 * 120.00609 * 359.97438 * 5 4 3 7 7 O 1.34771 * 119.99854 * 179.97438 * 5 4 3 8 8 C 1.45204 * 117.00469 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.47322 * 180.02562 * 8 7 5 10 10 C 1.38632 * 119.74735 * 269.72753 * 9 8 7 11 11 C 1.37620 * 120.24957 * 179.72207 * 10 9 8 12 12 C 1.40721 * 119.73730 * 0.56786 * 11 10 9 13 13 C 1.41396 * 120.23812 * 179.68268 * 12 11 10 14 14 H 1.08000 * 120.00199 * 204.40940 * 13 12 11 15 15 C 1.39941 * 120.00199 * 24.40442 * 13 12 11 16 16 N 1.30825 * 119.99961 * 17.84833 * 15 13 12 17 17 Si 1.86801 * 120.00203 * 197.84731 * 15 13 12 18 18 H 1.48501 * 109.47195 * 60.00143 * 17 15 13 19 19 H 1.48507 * 109.47369 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47239 * 300.00281 * 17 15 13 21 21 C 1.40711 * 119.51642 * 359.70672 * 12 11 10 22 22 C 1.37614 * 119.74341 * 359.97438 * 21 12 11 23 23 C 1.36495 * 105.59342 * 0.26062 * 4 3 2 24 24 O 1.33619 * 108.38631 * 359.57809 * 23 4 3 25 25 H 1.08996 * 109.47394 * 89.99625 * 1 2 3 26 26 H 1.09000 * 109.46647 * 209.99738 * 1 2 3 27 27 H 1.08997 * 109.46861 * 329.99401 * 1 2 3 28 28 H 1.08002 * 127.02484 * 0.02562 * 3 2 1 29 29 H 1.08997 * 109.46647 * 299.99653 * 8 7 5 30 30 H 1.08990 * 109.46980 * 59.99459 * 8 7 5 31 31 H 1.08004 * 119.87407 * 359.97438 * 10 9 8 32 32 H 1.07995 * 120.12795 * 180.27686 * 11 10 9 33 33 H 0.97005 * 119.99676 * 179.97438 * 16 15 13 34 34 H 1.07996 * 120.12599 * 179.97438 * 21 12 11 35 35 H 1.08007 * 119.87539 * 180.02562 * 22 21 12 36 36 H 1.08002 * 125.80300 * 179.74249 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2847 1.0931 0.0000 4 6 3.6712 0.6027 -0.0006 5 6 4.9014 1.4115 -0.0003 6 8 4.8310 2.6248 0.0000 7 8 6.1056 0.8065 -0.0005 8 6 7.2756 1.6664 -0.0008 9 6 8.5219 0.8192 -0.0015 10 6 9.0944 0.4369 1.2017 11 6 10.2293 -0.3416 1.2131 12 6 10.8151 -0.7393 -0.0029 13 6 11.9850 -1.5335 -0.0036 14 1 12.6485 -1.5169 -0.8555 15 6 12.2831 -2.3411 1.0997 16 7 11.3472 -2.6400 1.9635 17 14 14.0175 -2.9922 1.3392 18 1 14.9614 -1.8525 1.4633 19 1 14.0709 -3.8164 2.5734 20 1 14.3990 -3.8258 0.1709 21 6 10.2285 -0.3406 -1.2182 22 6 9.0900 0.4323 -1.2055 23 6 3.5787 -0.7591 -0.0069 24 8 2.2851 -1.0937 -0.0006 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3632 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.9591 2.1229 0.0004 29 1 7.2638 2.2955 -0.8908 30 1 7.2641 2.2957 0.8890 31 1 8.6459 0.7477 2.1337 32 1 10.6712 -0.6420 2.1516 33 1 11.5538 -3.2001 2.7281 34 1 10.6701 -0.6399 -2.1572 35 1 8.6377 0.7392 -2.1370 36 1 4.4098 -1.4488 -0.0130 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781380174.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:55 Heat of formation + Delta-G solvation = -62.888620 kcal Electronic energy + Delta-G solvation = -20732.980321 eV Core-core repulsion = 17341.313078 eV Total energy + Delta-G solvation = -3391.667242 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.70351 -39.76789 -37.66473 -35.94598 -33.88346 -33.28144 -32.28121 -30.74474 -29.38129 -27.49267 -26.74702 -24.58097 -23.27448 -21.20965 -21.09779 -20.11241 -19.91432 -17.62910 -17.40369 -16.81344 -16.53630 -15.89211 -15.75688 -15.31973 -14.50175 -14.03287 -13.72568 -13.69731 -13.46916 -13.30187 -13.03405 -12.73338 -12.37113 -12.34294 -12.06718 -12.00548 -11.73269 -11.18358 -11.01938 -10.85980 -10.48484 -10.33917 -10.14222 -9.93539 -9.71881 -9.47846 -9.23313 -8.74703 -7.57897 -7.46825 -6.88053 -4.47985 1.20909 1.82939 2.41865 2.67304 2.96114 2.99526 3.01437 3.04615 3.23292 3.39293 3.84461 4.42575 4.50793 4.67442 4.87765 5.09732 5.15157 5.37822 5.43575 5.59430 5.63382 5.67709 5.71858 5.87512 6.08837 6.17624 6.24509 6.30674 6.82350 6.84981 6.87263 6.96136 7.17167 7.25323 7.50339 7.72826 7.94235 7.99984 8.11033 8.17932 8.52424 8.77092 8.85398 10.05630 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.028262 B = 0.002982 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.497163 B = 9386.737053 C = 9950.310415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.021 4.021 3 C -0.161 4.161 4 C -0.226 4.226 5 C 0.530 3.470 6 O -0.518 6.518 7 O -0.348 6.348 8 C 0.138 3.862 9 C -0.236 4.236 10 C -0.075 4.075 11 C -0.171 4.171 12 C 0.119 3.881 13 C -0.456 4.456 14 H 0.080 0.920 15 C 0.075 3.925 16 N -0.785 5.785 17 Si 0.911 3.089 18 H -0.262 1.262 19 H -0.277 1.277 20 H -0.264 1.264 21 C -0.231 4.231 22 C -0.063 4.063 23 C 0.056 3.944 24 O -0.173 6.173 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.160 0.840 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.120 0.880 33 H 0.283 0.717 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.925 1.739 -1.299 15.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.069 4.069 3 C -0.180 4.180 4 C -0.228 4.228 5 C 0.375 3.625 6 O -0.409 6.409 7 O -0.265 6.265 8 C 0.066 3.934 9 C -0.238 4.238 10 C -0.094 4.094 11 C -0.190 4.190 12 C 0.116 3.884 13 C -0.485 4.485 14 H 0.098 0.902 15 C -0.144 4.144 16 N -0.409 5.409 17 Si 0.735 3.265 18 H -0.187 1.187 19 H -0.202 1.202 20 H -0.189 1.189 21 C -0.250 4.250 22 C -0.082 4.082 23 C -0.014 4.014 24 O -0.069 6.069 25 H 0.100 0.900 26 H 0.097 0.903 27 H 0.108 0.892 28 H 0.177 0.823 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.107 0.893 32 H 0.138 0.862 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -15.066 1.671 -1.077 15.197 hybrid contribution 0.982 -0.084 0.173 1.000 sum -14.085 1.587 -0.904 14.203 Atomic orbital electron populations 1.20314 0.84595 1.04225 1.03685 1.22284 0.94203 0.83596 1.06864 1.22443 0.89574 0.99791 1.06220 1.20714 0.92415 0.93289 1.16388 1.20052 0.83635 0.86025 0.72789 1.90794 1.88235 1.15001 1.46910 1.86762 1.14216 1.42583 1.82968 1.21748 0.79835 0.90767 1.01023 1.18674 0.98112 1.12856 0.94135 1.20548 0.96336 0.97390 0.95100 1.21297 0.97961 1.00934 0.98818 1.17683 0.91121 0.88653 0.90954 1.19651 1.06080 1.20820 1.01944 0.90189 1.25973 0.98802 0.94889 0.94738 1.69820 1.33451 1.26961 1.10696 0.86324 0.82248 0.79378 0.78576 1.18688 1.20224 1.18884 1.20961 0.99249 1.07670 0.97125 1.20398 0.95761 0.96791 0.95204 1.24842 0.83815 0.95853 0.96910 1.83759 1.16674 1.35496 1.70963 0.89963 0.90342 0.89214 0.82283 0.92003 0.91933 0.89297 0.86224 0.90561 0.88709 0.89276 0.75873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.40 36.01 0.37 -0.06 16 2 C -0.02 -0.22 7.28 -35.75 -0.26 -0.48 16 3 C -0.16 -2.01 10.90 -37.44 -0.41 -2.41 16 4 C -0.23 -3.33 6.31 -103.30 -0.65 -3.99 16 5 C 0.53 9.44 7.95 34.38 0.27 9.71 16 6 O -0.52 -10.26 16.77 -19.29 -0.32 -10.58 16 7 O -0.35 -6.62 10.06 -40.68 -0.41 -7.03 16 8 C 0.14 2.68 5.59 36.01 0.20 2.88 16 9 C -0.24 -5.22 5.54 -104.33 -0.58 -5.79 16 10 C -0.08 -1.74 9.67 -39.66 -0.38 -2.13 16 11 C -0.17 -4.35 8.70 -38.87 -0.34 -4.69 16 12 C 0.12 3.09 5.58 -106.82 -0.60 2.50 16 13 C -0.46 -11.75 9.05 -37.74 -0.34 -12.09 16 14 H 0.08 1.97 7.91 -52.49 -0.41 1.55 16 15 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 16 N -0.78 -19.68 10.95 55.55 0.61 -19.07 16 17 Si 0.91 18.03 29.59 -169.99 -5.03 13.00 16 18 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 19 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 20 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 21 C -0.23 -5.56 9.80 -38.88 -0.38 -5.94 16 22 C -0.06 -1.41 9.67 -39.66 -0.38 -1.79 16 23 C 0.06 0.70 11.94 30.10 0.36 1.05 16 24 O -0.17 -2.03 10.52 7.72 0.08 -1.95 16 25 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.16 1.77 8.06 -52.49 -0.42 1.35 16 29 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 30 H 0.06 1.17 8.07 -51.93 -0.42 0.75 16 31 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 32 H 0.12 3.13 6.15 -52.49 -0.32 2.80 16 33 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 34 H 0.09 2.14 8.06 -52.49 -0.42 1.71 16 35 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 36 H 0.22 2.33 8.06 -52.49 -0.42 1.91 16 LS Contribution 325.96 15.07 4.91 4.91 Total: -1.00 -29.57 325.96 -7.46 -37.03 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -4.09 Total: 5.19 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: -3.20 Total: -21.50 kcal Atomic # 7 Polarization: -19.68 SS G_CDS: 0.61 Total: -19.07 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.65 Total: -19.56 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.57 -7.46 -37.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781380174.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.862 kcal (2) G-P(sol) polarization free energy of solvation -29.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds