Wall clock time and date at job start Tue Mar 31 2020 06:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34152 * 125.42962 * 2 1 4 4 C 1.47062 * 105.95128 * 180.02562 * 3 2 1 5 5 C 1.47227 * 127.19804 * 180.02562 * 4 3 2 6 6 O 1.21531 * 120.00609 * 359.97438 * 5 4 3 7 7 O 1.34771 * 119.99854 * 179.97438 * 5 4 3 8 8 C 1.45204 * 117.00469 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.47322 * 180.02562 * 8 7 5 10 10 C 1.38632 * 119.74735 * 269.72753 * 9 8 7 11 11 C 1.37620 * 120.24957 * 179.72207 * 10 9 8 12 12 C 1.40721 * 119.73730 * 0.56786 * 11 10 9 13 13 C 1.41396 * 120.23812 * 179.68268 * 12 11 10 14 14 H 1.08000 * 120.00199 * 204.40940 * 13 12 11 15 15 C 1.39941 * 120.00199 * 24.40442 * 13 12 11 16 16 N 1.30825 * 119.99961 * 17.84833 * 15 13 12 17 17 Si 1.86801 * 120.00203 * 197.84731 * 15 13 12 18 18 H 1.48501 * 109.47195 * 60.00143 * 17 15 13 19 19 H 1.48507 * 109.47369 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47239 * 300.00281 * 17 15 13 21 21 C 1.40711 * 119.51642 * 359.70672 * 12 11 10 22 22 C 1.37614 * 119.74341 * 359.97438 * 21 12 11 23 23 C 1.36495 * 105.59342 * 0.26062 * 4 3 2 24 24 O 1.33619 * 108.38631 * 359.57809 * 23 4 3 25 25 H 1.08996 * 109.47394 * 89.99625 * 1 2 3 26 26 H 1.09000 * 109.46647 * 209.99738 * 1 2 3 27 27 H 1.08997 * 109.46861 * 329.99401 * 1 2 3 28 28 H 1.08002 * 127.02484 * 0.02562 * 3 2 1 29 29 H 1.08997 * 109.46647 * 299.99653 * 8 7 5 30 30 H 1.08990 * 109.46980 * 59.99459 * 8 7 5 31 31 H 1.08004 * 119.87407 * 359.97438 * 10 9 8 32 32 H 1.07995 * 120.12795 * 180.27686 * 11 10 9 33 33 H 0.97005 * 119.99676 * 179.97438 * 16 15 13 34 34 H 1.07996 * 120.12599 * 179.97438 * 21 12 11 35 35 H 1.08007 * 119.87539 * 180.02562 * 22 21 12 36 36 H 1.08002 * 125.80300 * 179.74249 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2847 1.0931 0.0000 4 6 3.6712 0.6027 -0.0006 5 6 4.9014 1.4115 -0.0003 6 8 4.8310 2.6248 0.0000 7 8 6.1056 0.8065 -0.0005 8 6 7.2756 1.6664 -0.0008 9 6 8.5219 0.8192 -0.0015 10 6 9.0944 0.4369 1.2017 11 6 10.2293 -0.3416 1.2131 12 6 10.8151 -0.7393 -0.0029 13 6 11.9850 -1.5335 -0.0036 14 1 12.6485 -1.5169 -0.8555 15 6 12.2831 -2.3411 1.0997 16 7 11.3472 -2.6400 1.9635 17 14 14.0175 -2.9922 1.3392 18 1 14.9614 -1.8525 1.4633 19 1 14.0709 -3.8164 2.5734 20 1 14.3990 -3.8258 0.1709 21 6 10.2285 -0.3406 -1.2182 22 6 9.0900 0.4323 -1.2055 23 6 3.5787 -0.7591 -0.0069 24 8 2.2851 -1.0937 -0.0006 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3632 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.9591 2.1229 0.0004 29 1 7.2638 2.2955 -0.8908 30 1 7.2641 2.2957 0.8890 31 1 8.6459 0.7477 2.1337 32 1 10.6712 -0.6420 2.1516 33 1 11.5538 -3.2001 2.7281 34 1 10.6701 -0.6399 -2.1572 35 1 8.6377 0.7392 -2.1370 36 1 4.4098 -1.4488 -0.0130 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781380174.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:54 Heat of formation + Delta-G solvation = -77.010881 kcal Electronic energy + Delta-G solvation = -20733.592708 eV Core-core repulsion = 17341.313078 eV Total energy + Delta-G solvation = -3392.279630 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.65205 -41.22802 -39.47016 -37.46930 -35.69468 -34.21263 -33.19701 -32.46208 -31.23994 -29.08966 -27.64848 -26.06995 -24.76036 -22.96121 -22.18248 -21.88055 -21.16875 -19.27493 -18.62362 -18.22199 -17.63877 -17.32489 -17.06841 -16.91814 -15.96606 -15.63810 -15.45534 -14.98754 -14.37058 -14.12408 -14.00265 -13.98759 -13.87485 -13.75495 -13.72092 -13.54482 -12.86448 -12.76121 -12.70344 -12.58690 -12.13550 -11.84356 -11.71030 -11.48955 -11.29912 -11.04915 -10.97506 -9.63728 -9.45255 -9.34834 -8.69486 -6.40563 0.08582 0.70796 0.91257 1.10306 1.38202 1.43878 1.51131 1.72669 1.96748 1.97767 2.19251 2.71423 3.52444 3.60816 3.73006 4.00112 4.07106 4.09340 4.26877 4.44677 4.47278 4.54008 4.57815 4.73570 4.75614 4.87044 4.99975 5.05198 5.11061 5.29273 5.35793 5.37797 5.41148 5.64134 5.87027 5.92475 6.04622 6.13569 6.30891 6.63264 6.69619 6.87581 6.96119 8.26888 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.028262 B = 0.002982 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.497163 B = 9386.737053 C = 9950.310415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.007 4.007 3 C -0.183 4.183 4 C -0.260 4.260 5 C 0.532 3.468 6 O -0.544 6.544 7 O -0.356 6.356 8 C 0.142 3.858 9 C -0.231 4.231 10 C -0.079 4.079 11 C -0.194 4.194 12 C 0.088 3.912 13 C -0.492 4.492 14 H 0.081 0.919 15 C 0.035 3.965 16 N -0.817 5.817 17 Si 0.984 3.016 18 H -0.260 1.260 19 H -0.267 1.267 20 H -0.258 1.258 21 C -0.245 4.245 22 C -0.064 4.064 23 C 0.070 3.930 24 O -0.173 6.173 25 H 0.099 0.901 26 H 0.091 0.909 27 H 0.107 0.893 28 H 0.166 0.834 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.291 0.709 34 H 0.103 0.897 35 H 0.117 0.883 36 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.374 1.320 -1.561 16.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.055 4.055 3 C -0.202 4.202 4 C -0.262 4.262 5 C 0.379 3.621 6 O -0.437 6.437 7 O -0.273 6.273 8 C 0.070 3.930 9 C -0.232 4.232 10 C -0.098 4.098 11 C -0.213 4.213 12 C 0.086 3.914 13 C -0.521 4.521 14 H 0.099 0.901 15 C -0.181 4.181 16 N -0.442 5.442 17 Si 0.805 3.195 18 H -0.185 1.185 19 H -0.191 1.191 20 H -0.182 1.182 21 C -0.264 4.264 22 C -0.082 4.082 23 C -0.001 4.001 24 O -0.068 6.068 25 H 0.118 0.882 26 H 0.110 0.890 27 H 0.126 0.874 28 H 0.184 0.816 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.102 0.898 34 H 0.122 0.878 35 H 0.135 0.865 36 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -16.544 1.252 -1.346 16.646 hybrid contribution 1.233 0.087 0.227 1.257 sum -15.311 1.339 -1.120 15.410 Atomic orbital electron populations 1.20573 0.81221 1.05772 1.05249 1.23058 0.95821 0.82477 1.04110 1.22617 0.88747 1.00910 1.07955 1.20754 0.92061 0.94220 1.19176 1.20469 0.83773 0.86052 0.71779 1.90771 1.88398 1.16097 1.48421 1.86718 1.14645 1.42563 1.83342 1.21613 0.79155 0.90244 1.01997 1.18941 0.98843 1.11795 0.93610 1.20771 0.95706 0.96788 0.96508 1.21268 0.99266 1.02532 0.98242 1.18041 0.91967 0.89539 0.91862 1.19915 1.06788 1.22199 1.03193 0.90138 1.26825 1.02786 0.94603 0.93884 1.69868 1.35442 1.27574 1.11282 0.85216 0.76677 0.78753 0.78890 1.18464 1.19117 1.18208 1.21170 0.99997 1.08299 0.96948 1.20704 0.95035 0.95881 0.96564 1.25106 0.84593 0.95265 0.95105 1.83807 1.16422 1.36038 1.70548 0.88238 0.89011 0.87442 0.81595 0.90806 0.91320 0.87647 0.87717 0.89826 0.87845 0.86462 0.74347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.64 10.40 71.24 0.74 0.11 16 2 C -0.01 -0.12 7.28 24.75 0.18 0.06 16 3 C -0.18 -4.31 10.90 23.65 0.26 -4.05 16 4 C -0.26 -7.44 6.31 -19.01 -0.12 -7.56 16 5 C 0.53 18.66 7.95 70.18 0.56 19.21 16 6 O -0.54 -21.35 16.77 19.74 0.33 -21.01 16 7 O -0.36 -13.20 10.06 -56.82 -0.57 -13.77 16 8 C 0.14 5.36 5.59 71.24 0.40 5.75 16 9 C -0.23 -10.02 5.54 -19.68 -0.11 -10.13 16 10 C -0.08 -3.71 9.67 22.22 0.21 -3.49 16 11 C -0.19 -10.15 8.70 22.73 0.20 -9.95 16 12 C 0.09 4.74 5.58 -21.29 -0.12 4.62 16 13 C -0.49 -26.03 9.05 23.46 0.21 -25.82 16 14 H 0.08 4.07 7.91 -2.91 -0.02 4.04 16 15 C 0.04 1.74 5.14 85.26 0.44 2.17 16 16 N -0.82 -41.82 10.95 21.83 0.24 -41.58 16 17 Si 0.98 37.07 29.59 68.60 2.03 39.10 16 18 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 19 H -0.27 -9.49 7.11 99.48 0.71 -8.78 16 20 H -0.26 -9.37 7.11 99.48 0.71 -8.67 16 21 C -0.24 -11.89 9.80 22.73 0.22 -11.67 16 22 C -0.06 -2.79 9.67 22.22 0.21 -2.57 16 23 C 0.07 1.63 11.94 67.41 0.80 2.44 16 24 O -0.17 -3.68 10.52 4.70 0.05 -3.63 16 25 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.17 3.52 8.06 -2.91 -0.02 3.50 16 29 H 0.07 2.61 8.08 -2.39 -0.02 2.59 16 30 H 0.07 2.50 8.07 -2.39 -0.02 2.48 16 31 H 0.11 4.46 8.06 -2.91 -0.02 4.43 16 32 H 0.10 5.70 6.15 -2.91 -0.02 5.69 16 33 H 0.29 13.42 8.30 -92.70 -0.77 12.65 16 34 H 0.10 4.70 8.06 -2.91 -0.02 4.68 16 35 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 36 H 0.24 4.62 8.06 -2.91 -0.02 4.59 16 Total: -1.00 -64.59 325.96 7.27 -57.33 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: 1.10 Total: 24.45 kcal Atomic # 6 Polarization: -44.98 SS G_CDS: 4.09 Total: -40.89 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: 0.24 Total: -41.58 kcal Atomic # 8 Polarization: -38.22 SS G_CDS: -0.19 Total: -38.41 kcal Atomic # 14 Polarization: 37.07 SS G_CDS: 2.03 Total: 39.10 kcal Total: -64.59 7.27 -57.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781380174.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.685 kcal (2) G-P(sol) polarization free energy of solvation -64.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds