Wall clock time and date at job start Tue Mar 31 2020 06:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.33590 * 125.73406 * 2 1 4 4 C 1.34890 * 109.82421 * 180.16191 * 3 2 1 5 5 C 1.43205 * 125.75744 * 179.85844 * 4 3 2 6 6 N 4.69753 * 150.58112 * 359.73199 * 2 1 3 7 7 C 1.36102 * 108.48197 * 359.59227 * 4 3 2 8 8 C 1.36743 * 125.73323 * 179.71507 * 2 1 3 9 9 C 1.47470 * 126.70412 * 359.97438 * 8 2 1 10 10 O 1.21629 * 119.99769 * 0.02562 * 9 8 2 11 11 N 1.34773 * 119.99856 * 180.02562 * 9 8 2 12 12 C 1.40561 * 119.99644 * 180.02562 * 11 9 8 13 13 C 1.40658 * 126.08622 * 0.02562 * 12 11 9 14 14 N 1.30908 * 108.39104 * 179.97438 * 13 12 11 15 15 N 1.40072 * 108.40628 * 359.97438 * 14 13 12 16 16 C 1.37322 * 126.06657 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99552 * 179.97438 * 16 15 14 18 18 C 1.38983 * 120.00154 * 359.97438 * 16 15 14 19 19 N 1.31294 * 119.99785 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00156 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46954 * 59.99881 * 20 18 16 22 22 H 1.48499 * 109.47050 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46841 * 299.99793 * 20 18 16 24 24 C 1.35689 * 126.08206 * 179.71739 * 12 11 9 25 25 H 1.09006 * 109.47011 * 270.28834 * 1 2 3 26 26 H 1.08994 * 109.47248 * 30.28433 * 1 2 3 27 27 H 1.08991 * 109.47305 * 150.28818 * 1 2 3 28 28 H 1.08003 * 126.71969 * 180.22157 * 7 4 3 29 29 H 0.96995 * 120.00250 * 359.97438 * 11 9 8 30 30 H 1.08001 * 125.80405 * 359.97438 * 13 12 11 31 31 H 0.97002 * 119.99943 * 180.02562 * 19 18 16 32 32 H 1.08002 * 126.24424 * 359.97438 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2872 1.0844 0.0000 4 6 3.5845 0.7146 -0.0036 5 6 4.7078 1.6028 -0.0076 6 7 5.5988 2.3074 -0.0108 7 6 3.6456 -0.6450 0.0032 8 6 2.3056 -1.1100 0.0055 9 6 1.8606 -2.5159 0.0130 10 8 0.6729 -2.7778 0.0144 11 7 2.7701 -3.5105 0.0184 12 6 2.3459 -4.8506 0.0251 13 6 1.0122 -5.2974 0.0263 14 7 1.0152 -6.6065 0.0325 15 7 2.3452 -7.0457 0.0350 16 6 2.7648 -8.3533 0.0408 17 1 3.8204 -8.5816 0.0418 18 6 1.8311 -9.3827 0.0455 19 7 0.5478 -9.1050 0.0448 20 14 2.4018 -11.1614 0.0527 21 1 3.2201 -11.4137 1.2659 22 1 1.2199 -12.0605 0.0563 23 1 3.2191 -11.4238 -1.1591 24 6 3.1502 -5.9434 0.0255 25 1 -0.3633 0.0052 1.0277 26 1 -0.3633 0.8874 -0.5182 27 1 -0.3633 -0.8925 -0.5093 28 1 4.5394 -1.2512 0.0059 29 1 3.7173 -3.3017 0.0170 30 1 0.1348 -4.6676 0.0227 31 1 -0.1039 -9.8235 0.0485 32 1 4.2302 -5.9414 0.0205 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797846714.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:01 Heat of formation + Delta-G solvation = 100.030077 kcal Electronic energy + Delta-G solvation = -20713.661391 eV Core-core repulsion = 17257.811242 eV Total energy + Delta-G solvation = -3455.850150 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.085 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.17869 -39.89424 -38.51567 -37.00040 -34.36483 -33.73581 -33.08738 -32.25483 -30.27310 -28.35777 -27.42662 -25.09035 -23.61201 -22.25987 -21.16773 -20.78612 -19.43801 -19.00558 -17.49295 -16.94332 -16.26368 -15.82067 -15.45341 -15.11002 -14.52705 -14.38641 -14.08498 -13.86922 -13.77529 -13.37097 -13.25232 -13.17900 -12.96168 -12.92372 -12.88127 -12.05006 -11.69774 -11.45995 -11.27011 -10.99263 -10.57754 -10.39102 -10.16342 -9.38355 -9.19780 -8.84541 -8.83215 -8.09253 -6.73808 -6.58274 -4.25477 0.63161 1.42325 1.58692 2.57892 2.88260 2.95117 3.03398 3.07525 3.30732 3.43396 3.71841 3.74355 3.86482 4.38621 4.42268 4.48193 4.77545 4.98277 4.99842 5.17991 5.31411 5.36933 5.47766 5.76359 5.98569 6.21214 6.39956 6.53059 6.86489 6.91753 6.92819 7.06718 7.20228 7.82640 8.11630 8.23626 8.58127 8.78061 9.34324 9.63602 10.37584 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.035301 B = 0.003172 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.997656 B = 8824.954782 C = 9602.806655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.110 3.890 3 O -0.151 6.151 4 C 0.022 3.978 5 C 0.296 3.704 6 N -0.384 5.384 7 C -0.087 4.087 8 C -0.226 4.226 9 C 0.571 3.429 10 O -0.532 6.532 11 N -0.612 5.612 12 C -0.061 4.061 13 C -0.030 4.030 14 N -0.261 5.261 15 N -0.141 5.141 16 C -0.323 4.323 17 H 0.116 0.884 18 C 0.047 3.953 19 N -0.769 5.769 20 Si 0.935 3.065 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.267 1.267 24 C -0.083 4.083 25 H 0.096 0.904 26 H 0.080 0.920 27 H 0.120 0.880 28 H 0.170 0.830 29 H 0.397 0.603 30 H 0.178 0.822 31 H 0.276 0.724 32 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.466 13.490 -0.097 13.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.054 3.946 3 O -0.045 6.045 4 C -0.029 4.029 5 C -0.020 4.020 6 N -0.062 5.062 7 C -0.110 4.110 8 C -0.231 4.231 9 C 0.358 3.642 10 O -0.411 6.411 11 N -0.253 5.253 12 C -0.167 4.167 13 C -0.206 4.206 14 N -0.092 5.092 15 N 0.091 4.909 16 C -0.455 4.455 17 H 0.134 0.866 18 C -0.171 4.171 19 N -0.396 5.396 20 Si 0.758 3.242 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.192 1.192 24 C -0.234 4.234 25 H 0.114 0.886 26 H 0.099 0.901 27 H 0.138 0.862 28 H 0.187 0.813 29 H 0.230 0.770 30 H 0.194 0.806 31 H 0.086 0.914 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.929 13.506 -0.092 13.821 hybrid contribution 1.253 -0.207 0.020 1.270 sum 4.182 13.299 -0.073 13.941 Atomic orbital electron populations 1.20796 0.82540 1.05818 1.05110 1.23194 0.94341 0.82136 0.94928 1.83951 1.14852 1.34824 1.70845 1.16093 0.79753 0.89755 1.17291 1.23489 0.92016 0.92659 0.93810 1.81346 1.09881 1.05609 1.09356 1.22011 0.98299 0.92054 0.98650 1.20225 0.92514 0.95142 1.15218 1.16869 0.85809 0.82714 0.78842 1.90662 1.16118 1.83224 1.51137 1.42252 1.08575 1.03953 1.70534 1.17221 0.93733 0.81560 1.24153 1.24130 0.95812 0.92907 1.07734 1.78267 0.96142 1.09042 1.25735 1.44550 1.03273 1.04099 1.38937 1.19834 0.94260 0.77960 1.53491 0.86637 1.25636 0.94863 1.01118 0.95459 1.70202 1.00477 1.33790 1.35097 0.85896 0.78690 0.80090 0.79489 1.19150 1.20121 1.19155 1.21258 0.95826 0.86395 1.19921 0.88556 0.90096 0.86157 0.81283 0.76992 0.80567 0.91371 0.83672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.76 9.87 36.01 0.36 -0.40 16 2 C 0.11 1.16 7.37 -34.85 -0.26 0.91 16 3 O -0.15 -1.53 10.62 5.94 0.06 -1.47 16 4 C 0.02 0.22 7.04 -38.42 -0.27 -0.05 16 5 C 0.30 3.03 15.87 -22.47 -0.36 2.67 16 6 N -0.38 -4.57 18.54 41.83 0.78 -3.79 16 7 C -0.09 -0.82 10.28 -38.98 -0.40 -1.22 16 8 C -0.23 -2.71 6.13 -105.30 -0.65 -3.36 16 9 C 0.57 9.14 7.79 -12.50 -0.10 9.05 16 10 O -0.53 -10.05 11.92 5.25 0.06 -9.99 16 11 N -0.61 -10.11 5.46 -10.95 -0.06 -10.17 16 12 C -0.06 -1.34 6.90 -83.85 -0.58 -1.92 16 13 C -0.03 -0.76 10.85 -17.03 -0.18 -0.95 16 14 N -0.26 -7.35 10.40 30.80 0.32 -7.03 16 15 N -0.14 -3.77 3.74 -11.41 -0.04 -3.81 16 16 C -0.32 -8.34 10.25 -14.82 -0.15 -8.50 16 17 H 0.12 2.65 7.83 -52.49 -0.41 2.24 16 18 C 0.05 1.18 5.50 -17.51 -0.10 1.08 16 19 N -0.77 -21.04 11.81 55.49 0.66 -20.39 16 20 Si 0.93 18.50 29.55 -169.99 -5.02 13.48 16 21 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 22 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 23 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 24 C -0.08 -1.87 11.49 -16.39 -0.19 -2.06 16 25 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.12 1.28 6.43 -51.93 -0.33 0.94 16 28 H 0.17 1.11 7.58 -52.48 -0.40 0.72 16 29 H 0.40 4.95 7.85 -40.82 -0.32 4.63 16 30 H 0.18 4.31 5.91 -52.49 -0.31 4.00 16 31 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.15 2.71 8.06 -52.49 -0.42 2.29 16 LS Contribution 300.95 15.07 4.54 4.54 Total: -1.00 -32.31 300.95 -3.76 -36.07 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -2.18 Total: 7.31 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -2.87 Total: -4.74 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: 1.65 Total: -45.19 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.13 Total: -11.46 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.02 Total: 13.48 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.31 -3.76 -36.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797846714.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.098 kcal (2) G-P(sol) polarization free energy of solvation -32.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds