Wall clock time and date at job start Tue Mar 31 2020 06:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.33590 * 125.73406 * 2 1 4 4 C 1.34890 * 109.82421 * 180.16191 * 3 2 1 5 5 C 1.43205 * 125.75744 * 179.85844 * 4 3 2 6 6 N 4.69753 * 150.58112 * 359.73199 * 2 1 3 7 7 C 1.36102 * 108.48197 * 359.59227 * 4 3 2 8 8 C 1.36743 * 125.73323 * 179.71507 * 2 1 3 9 9 C 1.47470 * 126.70412 * 359.97438 * 8 2 1 10 10 O 1.21629 * 119.99769 * 0.02562 * 9 8 2 11 11 N 1.34773 * 119.99856 * 180.02562 * 9 8 2 12 12 C 1.40561 * 119.99644 * 180.02562 * 11 9 8 13 13 C 1.40658 * 126.08622 * 0.02562 * 12 11 9 14 14 N 1.30908 * 108.39104 * 179.97438 * 13 12 11 15 15 N 1.40072 * 108.40628 * 359.97438 * 14 13 12 16 16 C 1.37322 * 126.06657 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99552 * 179.97438 * 16 15 14 18 18 C 1.38983 * 120.00154 * 359.97438 * 16 15 14 19 19 N 1.31294 * 119.99785 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00156 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46954 * 59.99881 * 20 18 16 22 22 H 1.48499 * 109.47050 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46841 * 299.99793 * 20 18 16 24 24 C 1.35689 * 126.08206 * 179.71739 * 12 11 9 25 25 H 1.09006 * 109.47011 * 270.28834 * 1 2 3 26 26 H 1.08994 * 109.47248 * 30.28433 * 1 2 3 27 27 H 1.08991 * 109.47305 * 150.28818 * 1 2 3 28 28 H 1.08003 * 126.71969 * 180.22157 * 7 4 3 29 29 H 0.96995 * 120.00250 * 359.97438 * 11 9 8 30 30 H 1.08001 * 125.80405 * 359.97438 * 13 12 11 31 31 H 0.97002 * 119.99943 * 180.02562 * 19 18 16 32 32 H 1.08002 * 126.24424 * 359.97438 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2872 1.0844 0.0000 4 6 3.5845 0.7146 -0.0036 5 6 4.7078 1.6028 -0.0076 6 7 5.5988 2.3074 -0.0108 7 6 3.6456 -0.6450 0.0032 8 6 2.3056 -1.1100 0.0055 9 6 1.8606 -2.5159 0.0130 10 8 0.6729 -2.7778 0.0144 11 7 2.7701 -3.5105 0.0184 12 6 2.3459 -4.8506 0.0251 13 6 1.0122 -5.2974 0.0263 14 7 1.0152 -6.6065 0.0325 15 7 2.3452 -7.0457 0.0350 16 6 2.7648 -8.3533 0.0408 17 1 3.8204 -8.5816 0.0418 18 6 1.8311 -9.3827 0.0455 19 7 0.5478 -9.1050 0.0448 20 14 2.4018 -11.1614 0.0527 21 1 3.2201 -11.4137 1.2659 22 1 1.2199 -12.0605 0.0563 23 1 3.2191 -11.4238 -1.1591 24 6 3.1502 -5.9434 0.0255 25 1 -0.3633 0.0052 1.0277 26 1 -0.3633 0.8874 -0.5182 27 1 -0.3633 -0.8925 -0.5093 28 1 4.5394 -1.2512 0.0059 29 1 3.7173 -3.3017 0.0170 30 1 0.1348 -4.6676 0.0227 31 1 -0.1039 -9.8235 0.0485 32 1 4.2302 -5.9414 0.0205 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797846714.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:00 Heat of formation + Delta-G solvation = 78.459982 kcal Electronic energy + Delta-G solvation = -20714.596741 eV Core-core repulsion = 17257.811242 eV Total energy + Delta-G solvation = -3456.785499 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.085 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.02993 -41.61062 -40.00777 -37.86002 -35.92771 -35.06685 -34.40957 -33.08497 -32.17417 -29.82310 -28.56364 -26.84504 -24.77222 -23.18821 -22.78906 -21.97368 -21.13459 -20.21036 -19.18288 -17.77861 -17.50433 -17.29887 -16.96076 -16.35358 -15.95261 -15.72919 -15.28516 -14.99296 -14.80736 -14.68533 -14.65838 -14.44672 -14.05772 -13.74529 -13.67184 -13.44174 -13.22590 -12.85830 -12.84568 -12.77358 -12.11797 -11.81032 -11.19595 -10.95896 -10.82772 -10.71093 -10.04859 -9.68584 -8.46679 -8.42888 -6.19372 -0.17352 0.45199 0.75932 1.34615 1.42672 1.58396 1.76109 1.76753 2.05110 2.07148 2.21344 2.29856 2.72178 2.82856 3.00448 3.13502 3.60402 3.63822 4.01470 4.35997 4.49378 4.54528 4.64046 4.68704 4.71746 4.98446 5.05124 5.14529 5.23788 5.34772 5.52584 5.70139 6.00370 6.12746 6.37347 6.78259 6.79023 7.40045 7.51319 7.74131 8.56239 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.035301 B = 0.003172 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.997656 B = 8824.954782 C = 9602.806655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.126 3.874 3 O -0.149 6.149 4 C 0.021 3.979 5 C 0.317 3.683 6 N -0.413 5.413 7 C -0.067 4.067 8 C -0.248 4.248 9 C 0.574 3.426 10 O -0.564 6.564 11 N -0.607 5.607 12 C -0.043 4.043 13 C -0.055 4.055 14 N -0.311 5.311 15 N -0.170 5.170 16 C -0.355 4.355 17 H 0.140 0.860 18 C -0.006 4.006 19 N -0.825 5.825 20 Si 1.017 2.983 21 H -0.254 1.254 22 H -0.279 1.279 23 H -0.254 1.254 24 C -0.079 4.079 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.100 0.900 28 H 0.200 0.800 29 H 0.419 0.581 30 H 0.174 0.826 31 H 0.276 0.724 32 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.567 14.371 -0.066 15.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.070 3.930 3 O -0.042 6.042 4 C -0.030 4.030 5 C 0.002 3.998 6 N -0.091 5.091 7 C -0.089 4.089 8 C -0.253 4.253 9 C 0.363 3.637 10 O -0.445 6.445 11 N -0.252 5.252 12 C -0.149 4.149 13 C -0.230 4.230 14 N -0.143 5.143 15 N 0.061 4.939 16 C -0.486 4.486 17 H 0.157 0.843 18 C -0.217 4.217 19 N -0.453 5.453 20 Si 0.836 3.164 21 H -0.178 1.178 22 H -0.204 1.204 23 H -0.178 1.178 24 C -0.230 4.230 25 H 0.126 0.874 26 H 0.127 0.873 27 H 0.118 0.882 28 H 0.217 0.783 29 H 0.256 0.744 30 H 0.191 0.809 31 H 0.085 0.915 32 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 5.086 14.443 -0.063 15.313 hybrid contribution 0.572 -0.226 0.008 0.615 sum 5.657 14.217 -0.054 15.301 Atomic orbital electron populations 1.20869 0.81494 1.06166 1.05934 1.23472 0.94980 0.81891 0.92688 1.83977 1.15078 1.34434 1.70739 1.16008 0.79431 0.89679 1.17880 1.23361 0.91555 0.92010 0.92884 1.81381 1.10792 1.06437 1.10476 1.22252 0.98118 0.91991 0.96576 1.19844 0.94197 0.92971 1.18263 1.17389 0.85222 0.84012 0.77045 1.90657 1.17701 1.84041 1.52051 1.42156 1.10047 1.01874 1.71085 1.17257 0.92280 0.83927 1.21409 1.24255 0.97434 0.92509 1.08842 1.78156 0.98194 1.10574 1.27385 1.44816 1.03155 1.05293 1.40646 1.20543 0.95649 0.78239 1.54144 0.84290 1.26825 0.94630 1.06030 0.94234 1.70385 1.02119 1.35266 1.37488 0.84685 0.78100 0.73441 0.80190 1.17826 1.20402 1.17838 1.22009 0.97624 0.85472 1.17851 0.87417 0.87312 0.88162 0.78279 0.74379 0.80922 0.91460 0.79549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.40 9.87 71.24 0.70 -0.69 16 2 C 0.13 2.38 7.37 25.34 0.19 2.57 16 3 O -0.15 -2.60 10.62 -1.67 -0.02 -2.62 16 4 C 0.02 0.34 7.04 23.02 0.16 0.50 16 5 C 0.32 5.70 15.87 88.33 1.40 7.10 16 6 N -0.41 -9.03 18.54 19.00 0.35 -8.68 16 7 C -0.07 -1.03 10.28 22.66 0.23 -0.79 16 8 C -0.25 -5.36 6.13 -20.31 -0.12 -5.48 16 9 C 0.57 17.67 7.79 86.68 0.67 18.34 16 10 O -0.56 -21.37 11.92 -4.12 -0.05 -21.42 16 11 N -0.61 -18.90 5.46 -306.81 -1.67 -20.58 16 12 C -0.04 -1.83 6.90 37.74 0.26 -1.57 16 13 C -0.05 -2.84 10.85 85.42 0.93 -1.91 16 14 N -0.31 -18.21 10.40 -56.46 -0.59 -18.80 16 15 N -0.17 -9.18 3.74 -190.00 -0.71 -9.89 16 16 C -0.35 -18.39 10.25 84.01 0.86 -17.52 16 17 H 0.14 6.21 7.83 -2.91 -0.02 6.19 16 18 C -0.01 -0.29 5.50 84.95 0.47 0.18 16 19 N -0.82 -46.87 11.81 21.66 0.26 -46.61 16 20 Si 1.02 37.91 29.55 68.60 2.03 39.94 16 21 H -0.25 -8.86 7.11 99.48 0.71 -8.16 16 22 H -0.28 -10.36 7.11 99.48 0.71 -9.65 16 23 H -0.25 -8.87 7.11 99.48 0.71 -8.16 16 24 C -0.08 -3.49 11.49 83.38 0.96 -2.53 16 25 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 26 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.10 2.08 6.43 -2.39 -0.02 2.07 16 28 H 0.20 1.72 7.58 -2.91 -0.02 1.70 16 29 H 0.42 9.09 7.85 -92.71 -0.73 8.36 16 30 H 0.17 8.84 5.91 -2.91 -0.02 8.83 16 31 H 0.28 14.46 8.31 -92.71 -0.77 13.69 16 32 H 0.19 6.37 8.06 -2.91 -0.02 6.35 16 Total: -1.00 -73.51 300.95 6.79 -66.72 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: 0.48 Total: 23.75 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: 6.71 Total: -1.81 kcal Atomic # 7 Polarization: -102.20 SS G_CDS: -2.36 Total: -104.56 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.07 Total: -24.04 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 2.03 Total: 39.94 kcal Total: -73.51 6.79 -66.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797846714.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.177 kcal (2) G-P(sol) polarization free energy of solvation -73.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds