Wall clock time and date at job start Tue Mar 31 2020 05:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31580 * 1 3 3 Si 1.86800 * 119.99629 * 2 1 4 4 H 1.48504 * 109.47032 * 269.99607 * 3 2 1 5 5 H 1.48503 * 109.47125 * 29.99671 * 3 2 1 6 6 H 1.48498 * 109.47174 * 149.99939 * 3 2 1 7 7 C 1.38629 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00384 * 0.02562 * 7 2 1 9 9 O 1.34808 * 119.99616 * 180.02562 * 7 2 1 10 10 C 1.35785 * 117.00032 * 174.97799 * 9 7 2 11 11 C 1.38739 * 120.08464 * 5.20138 * 10 9 7 12 12 C 1.38342 * 119.97517 * 180.02562 * 11 10 9 13 13 F 1.35104 * 119.92416 * 179.97438 * 12 11 10 14 14 C 1.38543 * 120.14999 * 359.97438 * 12 11 10 15 15 C 1.38190 * 120.17678 * 359.72038 * 14 12 11 16 16 C 1.38694 * 120.02125 * 0.55476 * 15 14 12 17 17 N 1.40139 * 120.07569 * 179.72052 * 16 15 14 18 18 C 1.34767 * 120.00166 * 335.22867 * 17 16 15 19 19 O 1.21599 * 120.00232 * 354.33298 * 18 17 16 20 20 N 1.34777 * 120.00090 * 174.05510 * 18 17 16 21 21 C 1.46509 * 120.00029 * 180.27931 * 20 18 17 22 22 C 1.53000 * 109.47024 * 179.97438 * 21 20 18 23 23 F 1.39898 * 109.47201 * 179.97438 * 22 21 20 24 24 H 0.96994 * 120.00215 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.01171 * 359.97438 * 11 10 9 26 26 H 1.08007 * 119.90790 * 180.02562 * 14 12 11 27 27 H 1.08004 * 119.99205 * 180.29656 * 15 14 12 28 28 H 0.97005 * 119.99803 * 155.23443 * 17 16 15 29 29 H 0.96996 * 119.99947 * 0.27360 * 20 18 17 30 30 H 1.09000 * 109.46550 * 299.99791 * 21 20 18 31 31 H 1.08999 * 109.46821 * 60.00122 * 21 20 18 32 32 H 1.09000 * 109.47373 * 300.00222 * 22 21 20 33 33 H 1.09010 * 109.46787 * 60.00053 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4972 2.0464 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5472 1.4403 0.7000 7 6 2.0089 -1.2006 0.0005 8 1 1.4690 -2.1358 0.0005 9 8 3.3570 -1.2005 0.0011 10 6 3.9735 -2.4056 0.1075 11 6 3.2241 -3.5732 0.1008 12 6 3.8545 -4.7998 0.2099 13 9 3.1237 -5.9361 0.2038 14 6 5.2335 -4.8656 0.3254 15 6 5.9866 -3.7069 0.3264 16 6 5.3617 -2.4730 0.2232 17 7 6.1238 -1.2970 0.2300 18 6 7.3381 -1.2843 0.8144 19 8 7.7293 -2.2605 1.4248 20 7 8.1211 -0.1916 0.7176 21 6 9.4437 -0.1801 1.3478 22 6 10.1203 1.1675 1.0888 23 9 11.3829 1.1788 1.6910 24 1 -0.4850 0.8400 -0.0004 25 1 2.1489 -3.5244 0.0113 26 1 5.7217 -5.8253 0.4099 27 1 7.0619 -3.7619 0.4117 28 1 5.7772 -0.4921 -0.1860 29 1 7.8091 0.5871 0.2307 30 1 9.3357 -0.3324 2.4217 31 1 10.0537 -0.9793 0.9269 32 1 10.2282 1.3195 0.0149 33 1 9.5103 1.9671 1.5095 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798017949.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:03 Heat of formation + Delta-G solvation = -140.060551 kcal Electronic energy + Delta-G solvation = -21956.474257 eV Core-core repulsion = 18039.523810 eV Total energy + Delta-G solvation = -3916.950447 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.84017 -48.65516 -41.87206 -40.54414 -38.27575 -36.27990 -35.67729 -34.46499 -31.39529 -31.03788 -29.34633 -27.31750 -24.63247 -23.71634 -23.15650 -22.07221 -20.16341 -19.86259 -19.39614 -18.46957 -17.50757 -17.25108 -17.12526 -16.93537 -16.63609 -16.28413 -15.96999 -15.85809 -15.78831 -15.59549 -15.22303 -14.97108 -14.71398 -14.28501 -14.24895 -13.80654 -13.59738 -13.14388 -12.63967 -12.42050 -12.19779 -12.15707 -11.88781 -11.65892 -11.46360 -11.12357 -10.92039 -10.27208 -9.61396 -8.76389 -8.50601 -6.25257 0.16550 0.39990 1.34014 1.39795 1.43832 1.52854 1.94714 2.27479 2.65027 2.75200 3.02087 3.06590 3.38637 3.54417 3.88877 3.89343 4.12754 4.14999 4.27507 4.37293 4.50454 4.69376 4.84591 4.89853 5.07959 5.17265 5.24978 5.37104 5.44344 5.58996 5.81008 5.87550 6.08575 6.80722 6.86667 7.34735 7.45014 8.60358 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.012011 B = 0.005533 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.543001 B = 5059.202400 C = 7318.175743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.010 3.990 3 Si 0.974 3.026 4 H -0.259 1.259 5 H -0.277 1.277 6 H -0.247 1.247 7 C -0.402 4.402 8 H 0.078 0.922 9 O -0.221 6.221 10 C 0.136 3.864 11 C -0.253 4.253 12 C 0.113 3.887 13 F -0.147 7.147 14 C -0.189 4.189 15 C -0.063 4.063 16 C 0.096 3.904 17 N -0.664 5.664 18 C 0.705 3.295 19 O -0.607 6.607 20 N -0.725 5.725 21 C 0.107 3.893 22 C 0.059 3.941 23 F -0.223 7.223 24 H 0.286 0.714 25 H 0.127 0.873 26 H 0.160 0.840 27 H 0.164 0.836 28 H 0.418 0.582 29 H 0.417 0.583 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.107 0.893 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.195 3.468 -1.032 18.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.189 4.189 3 Si 0.795 3.205 4 H -0.183 1.183 5 H -0.202 1.202 6 H -0.170 1.170 7 C -0.478 4.478 8 H 0.096 0.904 9 O -0.127 6.127 10 C 0.084 3.916 11 C -0.274 4.274 12 C 0.093 3.907 13 F -0.126 7.126 14 C -0.209 4.209 15 C -0.083 4.083 16 C 0.000 4.000 17 N -0.311 5.311 18 C 0.405 3.595 19 O -0.487 6.487 20 N -0.382 5.382 21 C -0.018 4.018 22 C 0.004 3.996 23 F -0.204 7.204 24 H 0.095 0.905 25 H 0.145 0.855 26 H 0.177 0.823 27 H 0.181 0.819 28 H 0.255 0.745 29 H 0.254 0.746 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.125 0.875 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 18.516 2.966 -0.492 18.758 hybrid contribution -1.209 0.750 -0.292 1.452 sum 17.307 3.715 -0.785 17.718 Atomic orbital electron populations 1.69749 1.07320 1.29867 1.49158 1.25378 0.95877 1.02563 0.95044 0.85173 0.79273 0.76480 0.79589 1.18350 1.20246 1.17015 1.20635 0.77663 0.96218 1.53273 0.90417 1.83428 1.21400 1.25452 1.82453 1.18672 0.90208 0.85475 0.97256 1.20963 1.01316 0.91346 1.13800 1.17513 0.89886 0.80726 1.02575 1.91431 1.78025 1.49010 1.94109 1.20955 0.90491 1.00575 1.08868 1.21042 1.01466 0.88508 0.97333 1.16815 0.85850 0.87318 1.10039 1.42194 1.16719 1.12975 1.59244 1.15879 0.80393 0.83960 0.79247 1.90860 1.74521 1.35485 1.47816 1.44607 1.17550 1.16691 1.59351 1.21750 0.82133 0.99111 0.98771 1.22142 0.79895 0.97021 1.00530 1.92769 1.43795 1.97586 1.86283 0.90472 0.85543 0.82274 0.81881 0.74528 0.74614 0.91544 0.90789 0.87475 0.88013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.50 13.96 21.61 0.30 -52.20 16 2 C 0.01 0.56 5.49 84.82 0.47 1.03 16 3 Si 0.97 40.09 28.62 68.60 1.96 42.05 16 4 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 5 H -0.28 -11.11 7.11 99.48 0.71 -10.41 16 6 H -0.25 -9.43 7.11 99.48 0.71 -8.72 16 7 C -0.40 -21.96 9.95 67.91 0.68 -21.29 16 8 H 0.08 4.58 5.44 -2.92 -0.02 4.57 16 9 O -0.22 -10.54 8.00 -22.91 -0.18 -10.72 16 10 C 0.14 5.91 6.66 22.68 0.15 6.06 16 11 C -0.25 -11.11 9.14 22.41 0.20 -10.90 16 12 C 0.11 4.33 7.29 22.37 0.16 4.49 16 13 F -0.15 -5.50 17.26 44.97 0.78 -4.72 16 14 C -0.19 -6.23 10.02 22.33 0.22 -6.00 16 15 C -0.06 -2.13 8.71 22.37 0.19 -1.94 16 16 C 0.10 3.53 6.45 38.22 0.25 3.78 16 17 N -0.66 -20.14 5.30 -316.70 -1.68 -21.82 16 18 C 0.70 19.65 8.37 179.06 1.50 21.15 16 19 O -0.61 -20.81 13.51 -4.03 -0.05 -20.86 16 20 N -0.72 -12.86 5.56 -478.51 -2.66 -15.52 16 21 C 0.11 1.68 6.13 86.38 0.53 2.21 16 22 C 0.06 0.57 7.67 71.98 0.55 1.12 16 23 F -0.22 -3.60 17.36 44.97 0.78 -2.81 16 24 H 0.29 14.92 8.31 -92.71 -0.77 14.15 16 25 H 0.13 6.09 5.63 -2.91 -0.02 6.07 16 26 H 0.16 4.19 8.06 -2.91 -0.02 4.16 16 27 H 0.16 5.26 5.78 -2.91 -0.02 5.24 16 28 H 0.42 11.23 8.36 -92.70 -0.78 10.46 16 29 H 0.42 4.62 8.49 -92.71 -0.79 3.84 16 30 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 Total: -1.00 -67.02 299.42 3.79 -63.23 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: -0.36 Total: 23.67 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: 4.91 Total: -0.30 kcal Atomic # 7 Polarization: -85.50 SS G_CDS: -4.04 Total: -89.54 kcal Atomic # 8 Polarization: -31.34 SS G_CDS: -0.24 Total: -31.58 kcal Atomic # 9 Polarization: -9.09 SS G_CDS: 1.56 Total: -7.53 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 1.96 Total: 42.05 kcal Total: -67.02 3.79 -63.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798017949.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.827 kcal (2) G-P(sol) polarization free energy of solvation -67.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds