Wall clock time and date at job start Tue Mar 31 2020 06:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30205 * 127.37349 * 2 1 4 4 O 1.20997 * 113.36720 * 180.02562 * 3 2 1 5 5 C 1.34055 * 112.97293 * 0.02562 * 4 3 2 6 6 N 1.32618 * 136.38352 * 180.02562 * 5 4 3 7 7 C 1.31777 * 120.67184 * 179.97438 * 6 5 4 8 8 N 1.31984 * 122.90709 * 359.77336 * 7 6 5 9 9 C 1.33303 * 120.90049 * 0.48348 * 8 7 6 10 10 N 1.38020 * 120.95651 * 179.79648 * 9 8 7 11 11 C 1.40533 * 120.00490 * 359.71519 * 10 9 8 12 12 C 1.40675 * 126.08026 * 0.02685 * 11 10 9 13 13 N 1.30915 * 108.38982 * 179.71985 * 12 11 10 14 14 N 1.40072 * 108.40838 * 0.40598 * 13 12 11 15 15 C 1.37315 * 126.06710 * 179.85763 * 14 13 12 16 16 H 1.07999 * 119.99871 * 179.68974 * 15 14 13 17 17 C 1.38978 * 120.00078 * 359.68463 * 15 14 13 18 18 N 1.31308 * 119.99953 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00089 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46879 * 60.00284 * 19 17 15 21 21 H 1.48503 * 109.47151 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47086 * 300.00228 * 19 17 15 23 23 C 1.35680 * 126.08895 * 179.97438 * 11 10 9 24 24 C 1.39782 * 118.08086 * 359.52140 * 9 8 7 25 25 H 1.09000 * 109.47558 * 269.96802 * 1 2 3 26 26 H 1.08994 * 109.47307 * 29.97119 * 1 2 3 27 27 H 1.09003 * 109.47223 * 149.96812 * 1 2 3 28 28 H 1.08000 * 118.54765 * 180.02562 * 7 6 5 29 29 H 0.97003 * 119.99687 * 179.71824 * 10 9 8 30 30 H 1.08002 * 125.80792 * 359.97415 * 12 11 10 31 31 H 0.96996 * 119.99704 * 179.97438 * 18 17 15 32 32 H 1.08004 * 126.24938 * 0.04455 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2973 1.0347 0.0000 4 8 3.4713 0.7419 -0.0005 5 6 3.6802 -0.5823 -0.0015 6 7 4.7335 -1.3881 -0.0019 7 6 4.5788 -2.6967 -0.0024 8 7 3.3941 -3.2787 0.0018 9 6 2.2754 -2.5539 -0.0027 10 7 1.0360 -3.1613 -0.0025 11 6 0.9405 -4.5633 -0.0035 12 6 2.0184 -5.4672 -0.0043 13 7 1.5368 -6.6845 0.0010 14 7 0.1382 -6.6068 -0.0042 15 6 -0.7305 -7.6702 -0.0039 16 1 -1.7965 -7.4967 -0.0031 17 6 -0.2381 -8.9698 -0.0047 18 7 1.0580 -9.1808 -0.0052 19 14 -1.4198 -10.4165 -0.0050 20 1 -2.2755 -10.3564 -1.2173 21 1 -0.6487 -11.6856 -0.0065 22 1 -2.2748 -10.3575 1.2078 23 6 -0.2078 -5.2862 -0.0030 24 6 2.3937 -1.1611 -0.0018 25 1 -0.3634 -0.0006 1.0276 26 1 -0.3633 0.8902 -0.5133 27 1 -0.3634 -0.8897 -0.5143 28 1 5.4603 -3.3207 -0.0023 29 1 0.2308 -2.6203 -0.0017 30 1 3.0654 -5.2020 -0.0045 31 1 1.4016 -10.0879 -0.0054 32 1 -1.2122 -4.8893 -0.0023 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799933877.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:56 Heat of formation + Delta-G solvation = 201.553043 kcal Electronic energy + Delta-G solvation = -21406.932035 eV Core-core repulsion = 17987.777002 eV Total energy + Delta-G solvation = -3419.155033 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.61905 -40.40195 -39.48822 -36.30960 -34.48869 -33.48721 -32.60117 -30.83017 -30.32120 -28.93761 -27.80665 -25.43101 -24.53811 -24.00334 -21.51708 -20.62976 -19.85060 -18.66396 -18.08245 -17.76641 -17.74106 -16.47551 -15.70153 -15.57208 -14.67774 -14.57602 -14.26849 -13.75337 -13.68332 -13.62102 -13.47951 -13.07902 -12.95052 -12.10440 -11.86591 -11.77725 -11.50899 -11.28958 -11.10561 -10.64751 -10.44542 -10.33997 -9.91624 -9.49010 -9.03031 -8.91683 -8.68633 -8.21080 -6.76644 -6.69926 -4.36377 0.75515 1.21522 2.09773 2.40014 2.88428 2.95634 3.01217 3.12515 3.41176 3.73759 3.85483 3.88030 4.06501 4.26802 4.36529 4.56911 4.61902 4.88677 5.07496 5.18733 5.20879 5.25601 5.41914 5.84745 6.07392 6.09341 6.30711 6.60634 6.78728 6.87903 7.04518 7.44841 7.70017 7.74468 8.10274 8.17963 8.41686 8.55589 9.19680 9.49279 10.25460 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.035787 B = 0.003782 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.222161 B = 7402.587429 C = 8169.663794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.088 3.912 3 N -0.342 5.342 4 O 0.074 5.926 5 C 0.287 3.713 6 N -0.560 5.560 7 C 0.387 3.613 8 N -0.570 5.570 9 C 0.505 3.495 10 N -0.568 5.568 11 C -0.075 4.075 12 C -0.019 4.019 13 N -0.262 5.262 14 N -0.137 5.137 15 C -0.321 4.321 16 H 0.117 0.883 17 C 0.047 3.953 18 N -0.765 5.765 19 Si 0.936 3.064 20 H -0.266 1.266 21 H -0.275 1.275 22 H -0.266 1.266 23 C -0.082 4.082 24 C -0.348 4.348 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.211 0.789 29 H 0.411 0.589 30 H 0.190 0.810 31 H 0.277 0.723 32 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.408 10.508 0.024 10.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.081 4.081 3 N -0.055 5.055 4 O 0.025 5.975 5 C 0.099 3.901 6 N -0.294 5.294 7 C 0.096 3.904 8 N -0.299 5.299 9 C 0.253 3.747 10 N -0.185 5.185 11 C -0.182 4.182 12 C -0.196 4.196 13 N -0.091 5.091 14 N 0.098 4.902 15 C -0.454 4.454 16 H 0.135 0.865 17 C -0.171 4.171 18 N -0.391 5.391 19 Si 0.759 3.241 20 H -0.191 1.191 21 H -0.200 1.200 22 H -0.191 1.191 23 C -0.234 4.234 24 C -0.363 4.363 25 H 0.109 0.891 26 H 0.106 0.894 27 H 0.099 0.901 28 H 0.227 0.773 29 H 0.248 0.752 30 H 0.207 0.793 31 H 0.088 0.912 32 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.375 9.679 0.031 9.687 hybrid contribution -1.834 0.257 -0.008 1.852 sum -2.209 9.936 0.023 10.179 Atomic orbital electron populations 1.20299 0.85172 1.04209 1.04069 1.23981 0.97845 0.86893 0.99382 1.73587 0.88549 1.22614 1.20743 1.84793 1.20451 1.19348 1.72942 1.21495 0.90028 0.85994 0.92598 1.67359 1.31037 1.04199 1.26755 1.25023 0.94682 0.85926 0.84739 1.68506 0.97517 1.37482 1.26395 1.17510 0.87008 0.84227 0.85937 1.41261 1.03660 1.05509 1.68027 1.17315 0.94624 0.80444 1.25780 1.24480 0.99834 0.89047 1.06208 1.78319 0.86795 1.18212 1.25805 1.44612 1.04794 1.02680 1.38160 1.19893 0.89079 0.83200 1.53224 0.86505 1.25658 0.96718 0.99395 0.95303 1.70195 1.11822 1.22738 1.34326 0.85869 0.79514 0.79093 0.79579 1.19074 1.19998 1.19068 1.21210 0.96874 0.85291 1.19997 1.20832 0.96494 0.94686 1.24269 0.89138 0.89450 0.90065 0.77274 0.75175 0.79329 0.91187 0.83617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 10.09 36.00 0.36 -0.35 16 2 C 0.09 1.18 7.57 -80.13 -0.61 0.57 16 3 N -0.34 -5.03 11.96 34.84 0.42 -4.61 16 4 O 0.07 1.16 11.11 17.12 0.19 1.35 16 5 C 0.29 4.64 8.82 -16.14 -0.14 4.50 16 6 N -0.56 -8.78 10.46 -14.54 -0.15 -8.93 16 7 C 0.39 5.60 12.22 -92.01 -1.12 4.47 16 8 N -0.57 -9.74 6.68 -13.79 -0.09 -9.83 16 9 C 0.51 8.51 7.50 -154.95 -1.16 7.35 16 10 N -0.57 -9.48 5.58 -10.01 -0.06 -9.54 16 11 C -0.08 -1.58 6.92 -83.86 -0.58 -2.16 16 12 C -0.02 -0.45 10.86 -17.02 -0.18 -0.63 16 13 N -0.26 -7.03 10.40 30.81 0.32 -6.71 16 14 N -0.14 -3.51 3.74 -11.41 -0.04 -3.55 16 15 C -0.32 -8.01 10.25 -14.82 -0.15 -8.16 16 16 H 0.12 2.58 7.83 -52.49 -0.41 2.17 16 17 C 0.05 1.15 5.50 -17.50 -0.10 1.06 16 18 N -0.77 -20.17 11.81 55.49 0.66 -19.51 16 19 Si 0.94 17.88 29.55 -169.99 -5.02 12.86 16 20 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 21 H -0.28 -5.22 7.11 56.52 0.40 -4.82 16 22 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 23 C -0.08 -1.78 11.49 -16.38 -0.19 -1.97 16 24 C -0.35 -5.41 6.48 -105.09 -0.68 -6.09 16 25 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.08 0.63 6.48 -51.93 -0.34 0.30 16 28 H 0.21 2.15 8.06 -52.49 -0.42 1.73 16 29 H 0.41 5.45 6.68 -40.82 -0.27 5.18 16 30 H 0.19 4.12 5.62 -52.49 -0.29 3.83 16 31 H 0.28 6.70 8.31 -40.82 -0.34 6.37 16 32 H 0.15 2.61 8.06 -52.48 -0.42 2.19 16 LS Contribution 287.64 15.07 4.33 4.33 Total: -1.00 -31.07 287.64 -6.14 -37.21 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -2.14 Total: 8.32 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -4.55 Total: -1.40 kcal Atomic # 7 Polarization: -63.73 SS G_CDS: 1.05 Total: -62.68 kcal Atomic # 8 Polarization: 1.16 SS G_CDS: 0.19 Total: 1.35 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.02 Total: 12.86 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.07 -6.14 -37.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799933877.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 238.767 kcal (2) G-P(sol) polarization free energy of solvation -31.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 207.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 201.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds