Wall clock time and date at job start Tue Mar 31 2020 06:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30205 * 127.37349 * 2 1 4 4 O 1.20997 * 113.36720 * 180.02562 * 3 2 1 5 5 C 1.34055 * 112.97293 * 0.02562 * 4 3 2 6 6 N 1.32618 * 136.38352 * 180.02562 * 5 4 3 7 7 C 1.31777 * 120.67184 * 179.97438 * 6 5 4 8 8 N 1.31984 * 122.90709 * 359.77336 * 7 6 5 9 9 C 1.33303 * 120.90049 * 0.48348 * 8 7 6 10 10 N 1.38020 * 120.95651 * 179.79648 * 9 8 7 11 11 C 1.40533 * 120.00490 * 359.71519 * 10 9 8 12 12 C 1.40675 * 126.08026 * 0.02685 * 11 10 9 13 13 N 1.30915 * 108.38982 * 179.71985 * 12 11 10 14 14 N 1.40072 * 108.40838 * 0.40598 * 13 12 11 15 15 C 1.37315 * 126.06710 * 179.85763 * 14 13 12 16 16 H 1.07999 * 119.99871 * 179.68974 * 15 14 13 17 17 C 1.38978 * 120.00078 * 359.68463 * 15 14 13 18 18 N 1.31308 * 119.99953 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00089 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46879 * 60.00284 * 19 17 15 21 21 H 1.48503 * 109.47151 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47086 * 300.00228 * 19 17 15 23 23 C 1.35680 * 126.08895 * 179.97438 * 11 10 9 24 24 C 1.39782 * 118.08086 * 359.52140 * 9 8 7 25 25 H 1.09000 * 109.47558 * 269.96802 * 1 2 3 26 26 H 1.08994 * 109.47307 * 29.97119 * 1 2 3 27 27 H 1.09003 * 109.47223 * 149.96812 * 1 2 3 28 28 H 1.08000 * 118.54765 * 180.02562 * 7 6 5 29 29 H 0.97003 * 119.99687 * 179.71824 * 10 9 8 30 30 H 1.08002 * 125.80792 * 359.97415 * 12 11 10 31 31 H 0.96996 * 119.99704 * 179.97438 * 18 17 15 32 32 H 1.08004 * 126.24938 * 0.04455 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2973 1.0347 0.0000 4 8 3.4713 0.7419 -0.0005 5 6 3.6802 -0.5823 -0.0015 6 7 4.7335 -1.3881 -0.0019 7 6 4.5788 -2.6967 -0.0024 8 7 3.3941 -3.2787 0.0018 9 6 2.2754 -2.5539 -0.0027 10 7 1.0360 -3.1613 -0.0025 11 6 0.9405 -4.5633 -0.0035 12 6 2.0184 -5.4672 -0.0043 13 7 1.5368 -6.6845 0.0010 14 7 0.1382 -6.6068 -0.0042 15 6 -0.7305 -7.6702 -0.0039 16 1 -1.7965 -7.4967 -0.0031 17 6 -0.2381 -8.9698 -0.0047 18 7 1.0580 -9.1808 -0.0052 19 14 -1.4198 -10.4165 -0.0050 20 1 -2.2755 -10.3564 -1.2173 21 1 -0.6487 -11.6856 -0.0065 22 1 -2.2748 -10.3575 1.2078 23 6 -0.2078 -5.2862 -0.0030 24 6 2.3937 -1.1611 -0.0018 25 1 -0.3634 -0.0006 1.0276 26 1 -0.3633 0.8902 -0.5133 27 1 -0.3634 -0.8897 -0.5143 28 1 5.4603 -3.3207 -0.0023 29 1 0.2308 -2.6203 -0.0017 30 1 3.0654 -5.2020 -0.0045 31 1 1.4016 -10.0879 -0.0054 32 1 -1.2122 -4.8893 -0.0023 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799933877.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:56 Heat of formation + Delta-G solvation = 181.571899 kcal Electronic energy + Delta-G solvation = -21407.798482 eV Core-core repulsion = 17987.777002 eV Total energy + Delta-G solvation = -3420.021480 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -45.77638 -41.82390 -41.06774 -37.67073 -35.68163 -35.12373 -33.89772 -32.32561 -31.92047 -29.81836 -29.41938 -27.05305 -25.81686 -25.35204 -22.92852 -22.17410 -21.45189 -19.85848 -19.60962 -19.05031 -18.93783 -17.88096 -17.39855 -17.04648 -16.02914 -15.94418 -15.57791 -15.25065 -15.16528 -14.72830 -14.49218 -14.41421 -13.78853 -13.46256 -13.42833 -13.21012 -12.96803 -12.77069 -12.74322 -12.12837 -11.68030 -11.61795 -11.15161 -11.06475 -10.78516 -10.25863 -10.12551 -9.99305 -8.45405 -8.36915 -6.20586 -0.45372 -0.04652 0.96133 1.20122 1.34977 1.41909 1.57244 1.78499 1.79609 2.18540 2.39119 2.73342 2.74426 2.86494 3.00328 3.11074 3.30726 3.42380 3.81984 4.02334 4.37090 4.46712 4.56787 4.63381 4.66471 4.94351 5.06233 5.08450 5.09338 5.31286 5.57518 5.86527 6.02470 6.37870 6.44060 6.79996 6.98779 7.19875 7.45935 7.70912 8.53148 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.035787 B = 0.003782 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.222161 B = 7402.587429 C = 8169.663794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.104 3.896 3 N -0.353 5.353 4 O 0.062 5.938 5 C 0.273 3.727 6 N -0.564 5.564 7 C 0.389 3.611 8 N -0.595 5.595 9 C 0.504 3.496 10 N -0.566 5.566 11 C -0.058 4.058 12 C -0.037 4.037 13 N -0.311 5.311 14 N -0.168 5.168 15 C -0.355 4.355 16 H 0.138 0.862 17 C -0.002 4.002 18 N -0.820 5.820 19 Si 1.014 2.986 20 H -0.255 1.255 21 H -0.278 1.278 22 H -0.255 1.255 23 C -0.077 4.077 24 C -0.352 4.352 25 H 0.111 0.889 26 H 0.105 0.895 27 H 0.094 0.906 28 H 0.248 0.752 29 H 0.428 0.572 30 H 0.198 0.802 31 H 0.277 0.723 32 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.122 11.747 0.048 12.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.066 4.066 3 N -0.069 5.069 4 O 0.016 5.984 5 C 0.084 3.916 6 N -0.297 5.297 7 C 0.100 3.900 8 N -0.324 5.324 9 C 0.252 3.748 10 N -0.187 5.187 11 C -0.165 4.165 12 C -0.214 4.214 13 N -0.141 5.141 14 N 0.065 4.935 15 C -0.486 4.486 16 H 0.156 0.844 17 C -0.214 4.214 18 N -0.447 5.447 19 Si 0.834 3.166 20 H -0.180 1.180 21 H -0.203 1.203 22 H -0.179 1.179 23 C -0.228 4.228 24 C -0.367 4.367 25 H 0.129 0.871 26 H 0.124 0.876 27 H 0.113 0.887 28 H 0.263 0.737 29 H 0.268 0.732 30 H 0.215 0.785 31 H 0.086 0.914 32 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -2.066 10.981 0.055 11.174 hybrid contribution -1.184 0.194 -0.015 1.200 sum -3.250 11.175 0.040 11.638 Atomic orbital electron populations 1.20590 0.81839 1.05801 1.05855 1.24667 0.99605 0.85326 0.96966 1.73598 0.88365 1.23047 1.21899 1.84800 1.21150 1.19027 1.73455 1.21789 0.90590 0.86453 0.92719 1.67451 1.31173 1.04584 1.26450 1.25769 0.95072 0.85891 0.83253 1.68488 0.98439 1.38478 1.27039 1.17680 0.87036 0.84756 0.85297 1.41056 1.04484 1.03781 1.69376 1.17303 0.93530 0.82210 1.23411 1.24763 1.00934 0.89080 1.06624 1.78206 0.88343 1.20245 1.27304 1.44833 1.04401 1.04051 1.40241 1.20532 0.90116 0.83804 1.54148 0.84443 1.26762 0.98286 1.02171 0.94174 1.70363 1.14172 1.23164 1.37008 0.84714 0.77026 0.74774 0.80120 1.17956 1.20316 1.17945 1.21924 0.98813 0.84303 1.17787 1.20939 0.97048 0.94541 1.24124 0.87064 0.87617 0.88698 0.73679 0.73163 0.78537 0.91356 0.79839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.17 10.09 71.23 0.72 -0.45 16 2 C 0.10 2.51 7.57 44.84 0.34 2.85 16 3 N -0.35 -9.73 11.96 -43.79 -0.52 -10.26 16 4 O 0.06 1.87 11.11 71.40 0.79 2.67 16 5 C 0.27 8.48 8.82 85.27 0.75 9.24 16 6 N -0.56 -16.97 10.46 -313.46 -3.28 -20.25 16 7 C 0.39 10.75 12.22 180.83 2.21 12.96 16 8 N -0.60 -19.73 6.68 -197.53 -1.32 -21.05 16 9 C 0.50 16.16 7.50 133.28 1.00 17.16 16 10 N -0.57 -17.71 5.58 -185.58 -1.04 -18.75 16 11 C -0.06 -2.37 6.92 37.75 0.26 -2.11 16 12 C -0.04 -1.76 10.86 85.42 0.93 -0.83 16 13 N -0.31 -17.14 10.40 -56.44 -0.59 -17.73 16 14 N -0.17 -8.67 3.74 -190.00 -0.71 -9.38 16 15 C -0.36 -17.78 10.25 84.01 0.86 -16.92 16 16 H 0.14 5.96 7.83 -2.91 -0.02 5.94 16 17 C 0.00 -0.08 5.50 84.95 0.47 0.39 16 18 N -0.82 -44.81 11.81 21.66 0.26 -44.56 16 19 Si 1.01 36.73 29.55 68.60 2.03 38.76 16 20 H -0.26 -8.70 7.11 99.48 0.71 -7.99 16 21 H -0.28 -10.03 7.11 99.48 0.71 -9.33 16 22 H -0.26 -8.69 7.11 99.48 0.71 -7.98 16 23 C -0.08 -3.25 11.49 83.37 0.96 -2.29 16 24 C -0.35 -10.29 6.48 -20.17 -0.13 -10.42 16 25 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.09 1.10 6.48 -2.39 -0.02 1.08 16 28 H 0.25 4.58 8.06 -2.91 -0.02 4.56 16 29 H 0.43 10.03 6.68 -92.71 -0.62 9.41 16 30 H 0.20 8.70 5.62 -2.91 -0.02 8.69 16 31 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 32 H 0.18 6.05 8.06 -2.91 -0.02 6.02 16 Total: -1.00 -69.65 287.64 4.58 -65.07 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: 0.59 Total: 25.90 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: 8.36 Total: 9.57 kcal Atomic # 7 Polarization: -134.77 SS G_CDS: -7.20 Total: -141.97 kcal Atomic # 8 Polarization: 1.87 SS G_CDS: 0.79 Total: 2.67 kcal Atomic # 14 Polarization: 36.73 SS G_CDS: 2.03 Total: 38.76 kcal Total: -69.65 4.58 -65.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799933877.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 246.647 kcal (2) G-P(sol) polarization free energy of solvation -69.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 176.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 181.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds