Wall clock time and date at job start Tue Mar 31 2020 06:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33590 * 118.46892 * 2 1 4 4 C 1.41562 * 118.78974 * 0.40411 * 3 2 1 5 5 O 1.21671 * 119.99641 * 104.19169 * 4 3 2 6 6 O 1.34923 * 120.00220 * 284.46007 * 4 3 2 7 7 C 1.42896 * 116.99948 * 179.72895 * 6 4 3 8 8 C 1.52997 * 109.47326 * 180.02562 * 7 6 4 9 9 C 1.52992 * 109.47499 * 179.97438 * 8 7 6 10 10 S 1.81004 * 109.47429 * 179.97438 * 9 8 7 11 11 C 1.76195 * 100.00079 * 179.97438 * 10 9 8 12 12 H 1.07996 * 120.00547 * 0.02562 * 11 10 9 13 13 C 1.38802 * 120.00212 * 179.97438 * 11 10 9 14 14 N 1.31634 * 119.99629 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 120.00336 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47307 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47154 * 120.00345 * 15 13 11 18 18 H 1.48501 * 109.47292 * 240.00494 * 15 13 11 19 19 C 1.50415 * 122.41118 * 180.68890 * 3 2 1 20 20 C 1.53374 * 109.47357 * 341.90681 * 19 3 2 21 21 C 1.53477 * 108.12439 * 47.70527 * 20 19 3 22 22 O 1.34308 * 118.46973 * 180.02562 * 2 1 3 23 23 H 1.09000 * 109.46852 * 84.74338 * 1 2 3 24 24 H 1.09003 * 109.47297 * 204.74344 * 1 2 3 25 25 H 1.08997 * 109.47180 * 324.74566 * 1 2 3 26 26 H 1.09002 * 109.47263 * 300.00039 * 7 6 4 27 27 H 1.08997 * 109.47618 * 60.00094 * 7 6 4 28 28 H 1.09005 * 109.47106 * 299.99831 * 8 7 6 29 29 H 1.08997 * 109.47563 * 59.99406 * 8 7 6 30 30 H 1.09002 * 109.47342 * 299.99762 * 9 8 7 31 31 H 1.09005 * 109.47211 * 59.99904 * 9 8 7 32 32 H 0.97004 * 120.00224 * 179.97438 * 14 13 11 33 33 H 1.09005 * 109.45605 * 102.10610 * 19 3 2 34 34 H 1.09002 * 109.45277 * 222.04886 * 19 3 2 35 35 H 1.09001 * 109.90310 * 287.97910 * 20 19 3 36 36 H 1.08995 * 109.67453 * 167.29995 * 20 19 3 37 37 H 1.09006 * 109.70259 * 177.41808 * 21 20 19 38 38 H 1.08994 * 109.70788 * 56.80139 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1437 1.1744 0.0000 4 6 1.3781 2.3651 0.0088 5 8 1.2728 3.0130 1.0332 6 8 0.7608 2.7785 -1.1175 7 6 0.0004 3.9855 -1.0347 8 6 -0.6211 4.2913 -2.3989 9 6 -1.4359 5.5832 -2.3102 10 16 -2.1705 5.9453 -3.9243 11 6 -3.0264 7.4375 -3.5431 12 1 -2.9831 7.8447 -2.5438 13 6 -3.7556 8.0902 -4.5274 14 7 -3.8080 7.5942 -5.7456 15 14 -4.6624 9.6726 -4.1235 16 1 -4.4454 10.0167 -2.6953 17 1 -4.1477 10.7707 -4.9805 18 1 -6.1146 9.4886 -4.3736 19 6 3.6443 1.2778 -0.0153 20 6 4.2535 -0.0608 0.4197 21 6 3.5546 -1.1805 -0.3635 22 8 2.1472 -1.1807 -0.0005 23 1 -0.3633 0.0942 -1.0234 24 1 -0.3634 -0.9333 0.4301 25 1 -0.3633 0.8392 0.5932 26 1 -0.7905 3.8666 -0.2941 27 1 0.6534 4.8070 -0.7403 28 1 0.1694 4.4101 -3.1400 29 1 -1.2743 3.4697 -2.6931 30 1 -2.2265 5.4640 -1.5693 31 1 -0.7830 6.4050 -2.0159 32 1 -4.3179 8.0501 -6.4334 33 1 3.9810 1.5236 -1.0224 34 1 3.9612 2.0602 0.6743 35 1 4.0996 -0.2087 1.4886 36 1 5.3206 -0.0677 0.1977 37 1 4.0003 -2.1417 -0.1073 38 1 3.6580 -1.0003 -1.4335 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805516676.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:31 Heat of formation + Delta-G solvation = -133.396425 kcal Electronic energy + Delta-G solvation = -19773.077240 eV Core-core repulsion = 16513.796501 eV Total energy + Delta-G solvation = -3259.280739 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.107 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.18041 -39.87653 -36.77234 -34.51849 -33.79645 -33.19844 -32.43918 -28.69716 -27.01285 -25.84011 -25.29848 -23.50201 -21.97220 -21.30566 -19.34412 -18.05761 -17.41009 -17.04624 -16.83095 -16.04124 -15.90934 -14.93344 -14.81681 -14.70733 -14.27577 -14.09801 -13.74864 -13.43880 -13.32777 -12.87986 -12.73788 -12.62435 -12.51998 -12.10914 -11.72252 -11.33834 -11.28605 -11.13312 -11.02028 -10.94749 -10.88628 -10.69854 -10.49032 -10.21049 -9.61686 -9.08312 -8.68027 -8.34662 -6.56112 -6.24824 -3.95582 1.32423 2.11426 2.70763 2.93798 3.20620 3.24117 3.30226 3.58684 4.20032 4.22798 4.24941 4.43680 4.67929 4.82812 4.94500 4.98455 5.11122 5.12803 5.14875 5.18521 5.22709 5.24477 5.37860 5.43654 5.51815 5.53549 5.64635 5.74367 5.80003 5.86171 5.99874 6.19092 6.46859 6.47253 6.69199 6.90906 7.59639 7.76444 8.35366 9.21769 10.83424 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.042390 B = 0.002542 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.375619 B =11010.147366 C =11152.660864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.159 3.841 3 C -0.289 4.289 4 C 0.530 3.470 5 O -0.507 6.507 6 O -0.347 6.347 7 C 0.067 3.933 8 C -0.096 4.096 9 C -0.114 4.114 10 S -0.125 6.125 11 C -0.517 4.517 12 H 0.074 0.926 13 C 0.070 3.930 14 N -0.870 5.870 15 Si 0.920 3.080 16 H -0.271 1.271 17 H -0.280 1.280 18 H -0.280 1.280 19 C -0.058 4.058 20 C -0.156 4.156 21 C 0.056 3.944 22 O -0.307 6.307 23 H 0.099 0.901 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.267 0.733 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.110 0.890 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.735 -17.918 10.906 25.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.111 3.889 3 C -0.292 4.292 4 C 0.375 3.625 5 O -0.396 6.396 6 O -0.264 6.264 7 C -0.008 4.008 8 C -0.135 4.135 9 C -0.263 4.263 10 S 0.103 5.897 11 C -0.665 4.665 12 H 0.092 0.908 13 C -0.138 4.138 14 N -0.505 5.505 15 Si 0.746 3.254 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.205 1.205 19 C -0.096 4.096 20 C -0.193 4.193 21 C -0.018 4.018 22 O -0.219 6.219 23 H 0.117 0.883 24 H 0.104 0.896 25 H 0.101 0.899 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.128 0.872 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 14.595 -18.431 10.069 25.575 hybrid contribution -0.491 2.062 1.398 2.539 sum 14.105 -16.368 11.466 24.461 Atomic orbital electron populations 1.21069 0.87648 1.04475 1.04860 1.20968 0.93858 0.83909 0.90175 1.19107 0.96739 0.90906 1.22455 1.19483 0.76707 0.84833 0.81521 1.90897 1.59386 1.56310 1.32993 1.86312 1.60298 1.42325 1.37475 1.22868 0.94242 0.83919 0.99799 1.21275 0.99699 0.97964 0.94520 1.23184 1.01082 0.97908 1.04096 1.84646 1.63020 1.33320 1.08741 1.22737 1.35354 1.09038 0.99363 0.90797 1.25025 0.96048 0.98247 0.94509 1.70032 1.39643 1.39049 1.01793 0.86091 0.79111 0.81589 0.78603 1.19580 1.20553 1.20544 1.20159 0.88601 0.98170 1.02631 1.22230 1.00921 0.94662 1.01485 1.23574 0.77856 1.00696 0.99702 1.86181 1.25443 1.27947 1.82312 0.88301 0.89574 0.89885 0.91508 0.91510 0.90432 0.90426 0.91748 0.91768 0.92316 0.90285 0.89925 0.90146 0.89170 0.87160 0.90579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 9.42 36.00 0.34 -0.81 16 2 C 0.16 1.66 6.70 -35.94 -0.24 1.42 16 3 C -0.29 -3.34 5.51 -105.12 -0.58 -3.92 16 4 C 0.53 7.54 5.07 32.00 0.16 7.70 16 5 O -0.51 -8.56 16.86 -19.40 -0.33 -8.89 16 6 O -0.35 -5.04 10.00 -41.10 -0.41 -5.45 16 7 C 0.07 1.01 5.38 37.16 0.20 1.21 16 8 C -0.10 -1.59 5.59 -26.74 -0.15 -1.74 16 9 C -0.11 -2.30 5.67 37.15 0.21 -2.09 16 10 S -0.13 -3.27 21.44 -107.50 -2.30 -5.58 16 11 C -0.52 -14.81 9.50 30.94 0.29 -14.51 16 12 H 0.07 2.06 7.80 -52.49 -0.41 1.65 16 13 C 0.07 2.01 5.49 -17.43 -0.10 1.91 16 14 N -0.87 -25.93 13.22 55.49 0.73 -25.19 16 15 Si 0.92 21.56 29.55 -169.99 -5.02 16.54 16 16 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 C -0.06 -0.52 5.89 -27.83 -0.16 -0.68 16 20 C -0.16 -0.95 6.24 -26.29 -0.16 -1.12 16 21 C 0.06 0.33 7.14 37.40 0.27 0.60 16 22 O -0.31 -2.82 10.40 -14.77 -0.15 -2.98 16 23 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 24 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.08 0.86 6.96 -51.93 -0.36 0.49 16 26 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 27 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 28 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 29 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 31 H 0.06 1.28 8.14 -51.91 -0.42 0.86 16 32 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 337.43 15.07 5.08 5.08 Total: -1.00 -33.29 337.43 -8.14 -41.44 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -5.82 Total: -2.93 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: 0.08 Total: -12.04 kcal Atomic # 7 Polarization: -25.93 SS G_CDS: 0.73 Total: -25.19 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.89 Total: -17.32 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -3.27 SS G_CDS: -2.30 Total: -5.58 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.29 -8.14 -41.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805516676.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.961 kcal (2) G-P(sol) polarization free energy of solvation -33.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds