Wall clock time and date at job start Tue Mar 31 2020 06:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33590 * 118.46892 * 2 1 4 4 C 1.41562 * 118.78974 * 0.40411 * 3 2 1 5 5 O 1.21671 * 119.99641 * 104.19169 * 4 3 2 6 6 O 1.34923 * 120.00220 * 284.46007 * 4 3 2 7 7 C 1.42896 * 116.99948 * 179.72895 * 6 4 3 8 8 C 1.52997 * 109.47326 * 180.02562 * 7 6 4 9 9 C 1.52992 * 109.47499 * 179.97438 * 8 7 6 10 10 S 1.81004 * 109.47429 * 179.97438 * 9 8 7 11 11 C 1.76195 * 100.00079 * 179.97438 * 10 9 8 12 12 H 1.07996 * 120.00547 * 0.02562 * 11 10 9 13 13 C 1.38802 * 120.00212 * 179.97438 * 11 10 9 14 14 N 1.31634 * 119.99629 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 120.00336 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47307 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47154 * 120.00345 * 15 13 11 18 18 H 1.48501 * 109.47292 * 240.00494 * 15 13 11 19 19 C 1.50415 * 122.41118 * 180.68890 * 3 2 1 20 20 C 1.53374 * 109.47357 * 341.90681 * 19 3 2 21 21 C 1.53477 * 108.12439 * 47.70527 * 20 19 3 22 22 O 1.34308 * 118.46973 * 180.02562 * 2 1 3 23 23 H 1.09000 * 109.46852 * 84.74338 * 1 2 3 24 24 H 1.09003 * 109.47297 * 204.74344 * 1 2 3 25 25 H 1.08997 * 109.47180 * 324.74566 * 1 2 3 26 26 H 1.09002 * 109.47263 * 300.00039 * 7 6 4 27 27 H 1.08997 * 109.47618 * 60.00094 * 7 6 4 28 28 H 1.09005 * 109.47106 * 299.99831 * 8 7 6 29 29 H 1.08997 * 109.47563 * 59.99406 * 8 7 6 30 30 H 1.09002 * 109.47342 * 299.99762 * 9 8 7 31 31 H 1.09005 * 109.47211 * 59.99904 * 9 8 7 32 32 H 0.97004 * 120.00224 * 179.97438 * 14 13 11 33 33 H 1.09005 * 109.45605 * 102.10610 * 19 3 2 34 34 H 1.09002 * 109.45277 * 222.04886 * 19 3 2 35 35 H 1.09001 * 109.90310 * 287.97910 * 20 19 3 36 36 H 1.08995 * 109.67453 * 167.29995 * 20 19 3 37 37 H 1.09006 * 109.70259 * 177.41808 * 21 20 19 38 38 H 1.08994 * 109.70788 * 56.80139 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1437 1.1744 0.0000 4 6 1.3781 2.3651 0.0088 5 8 1.2728 3.0130 1.0332 6 8 0.7608 2.7785 -1.1175 7 6 0.0004 3.9855 -1.0347 8 6 -0.6211 4.2913 -2.3989 9 6 -1.4359 5.5832 -2.3102 10 16 -2.1705 5.9453 -3.9243 11 6 -3.0264 7.4375 -3.5431 12 1 -2.9831 7.8447 -2.5438 13 6 -3.7556 8.0902 -4.5274 14 7 -3.8080 7.5942 -5.7456 15 14 -4.6624 9.6726 -4.1235 16 1 -4.4454 10.0167 -2.6953 17 1 -4.1477 10.7707 -4.9805 18 1 -6.1146 9.4886 -4.3736 19 6 3.6443 1.2778 -0.0153 20 6 4.2535 -0.0608 0.4197 21 6 3.5546 -1.1805 -0.3635 22 8 2.1472 -1.1807 -0.0005 23 1 -0.3633 0.0942 -1.0234 24 1 -0.3634 -0.9333 0.4301 25 1 -0.3633 0.8392 0.5932 26 1 -0.7905 3.8666 -0.2941 27 1 0.6534 4.8070 -0.7403 28 1 0.1694 4.4101 -3.1400 29 1 -1.2743 3.4697 -2.6931 30 1 -2.2265 5.4640 -1.5693 31 1 -0.7830 6.4050 -2.0159 32 1 -4.3179 8.0501 -6.4334 33 1 3.9810 1.5236 -1.0224 34 1 3.9612 2.0602 0.6743 35 1 4.0996 -0.2087 1.4886 36 1 5.3206 -0.0677 0.1977 37 1 4.0003 -2.1417 -0.1073 38 1 3.6580 -1.0003 -1.4335 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805516676.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:31 Heat of formation + Delta-G solvation = -152.457463 kcal Electronic energy + Delta-G solvation = -19773.903788 eV Core-core repulsion = 16513.796501 eV Total energy + Delta-G solvation = -3260.107288 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.107 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.14122 -40.75462 -37.96799 -35.32236 -34.85176 -34.59399 -34.20016 -29.43410 -28.29646 -27.61169 -26.46367 -24.31071 -22.96085 -22.59474 -20.23301 -19.53861 -18.89617 -18.17314 -17.82276 -16.96314 -16.90744 -16.54656 -16.30752 -15.86706 -15.40830 -15.16098 -14.83115 -14.45499 -14.19035 -14.06391 -13.91466 -13.82237 -13.47106 -13.27781 -13.13121 -12.96875 -12.62725 -12.45389 -12.40943 -12.33926 -11.86935 -11.72712 -11.59419 -11.48896 -11.38476 -11.16608 -10.36882 -9.47410 -8.68873 -8.38994 -6.15417 0.46996 1.03636 1.29953 1.38238 1.47383 1.60171 1.97021 2.17022 2.26928 2.95617 3.28343 3.52797 3.68554 3.82526 3.89726 3.97865 4.01320 4.11284 4.16838 4.23634 4.31139 4.37814 4.50416 4.54355 4.55143 4.65950 4.67328 4.81353 4.89151 5.00183 5.07575 5.11893 5.13469 5.19526 5.38475 5.39783 6.17389 6.19474 6.63192 7.03694 8.70662 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.042390 B = 0.002542 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.375619 B =11010.147366 C =11152.660864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.171 3.829 3 C -0.318 4.318 4 C 0.537 3.463 5 O -0.540 6.540 6 O -0.348 6.348 7 C 0.075 3.925 8 C -0.084 4.084 9 C -0.092 4.092 10 S -0.184 6.184 11 C -0.539 4.539 12 H 0.073 0.927 13 C 0.016 3.984 14 N -0.907 5.907 15 Si 0.995 3.005 16 H -0.264 1.264 17 H -0.271 1.271 18 H -0.271 1.271 19 C -0.061 4.061 20 C -0.148 4.148 21 C 0.048 3.952 22 O -0.313 6.313 23 H 0.104 0.896 24 H 0.104 0.896 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.272 0.728 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.118 0.882 37 H 0.140 0.860 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.450 -18.705 11.620 26.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.122 3.878 3 C -0.321 4.321 4 C 0.383 3.617 5 O -0.430 6.430 6 O -0.265 6.265 7 C -0.001 4.001 8 C -0.122 4.122 9 C -0.241 4.241 10 S 0.044 5.956 11 C -0.687 4.687 12 H 0.091 0.909 13 C -0.189 4.189 14 N -0.543 5.543 15 Si 0.817 3.183 16 H -0.188 1.188 17 H -0.196 1.196 18 H -0.196 1.196 19 C -0.098 4.098 20 C -0.186 4.186 21 C -0.025 4.025 22 O -0.225 6.225 23 H 0.122 0.878 24 H 0.123 0.877 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.136 0.864 37 H 0.158 0.842 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 15.327 -19.241 10.777 26.857 hybrid contribution -0.648 2.186 1.198 2.576 sum 14.680 -17.055 11.974 25.490 Atomic orbital electron populations 1.21130 0.87331 1.04895 1.05078 1.21079 0.94320 0.84025 0.88375 1.19272 0.97898 0.90093 1.24839 1.19944 0.75903 0.85120 0.80695 1.90876 1.60576 1.57629 1.33952 1.86313 1.60285 1.41906 1.37958 1.22648 0.94477 0.84416 0.98559 1.21097 0.99304 0.96195 0.95607 1.23073 1.01173 0.99718 1.00098 1.84615 1.63792 1.33178 1.13969 1.23078 1.36050 1.09971 0.99609 0.90853 1.26065 0.96730 1.01945 0.94208 1.70152 1.40481 1.40778 1.02891 0.84956 0.77810 0.76826 0.78719 1.18770 1.19649 1.19597 1.20252 0.87065 0.99659 1.02865 1.22231 1.02344 0.92929 1.01069 1.23938 0.76069 1.02167 1.00309 1.86182 1.27310 1.27131 1.81859 0.87778 0.87737 0.91239 0.91057 0.91478 0.90394 0.90038 0.91298 0.91505 0.91884 0.89641 0.91041 0.90706 0.86381 0.84219 0.89676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 9.42 71.23 0.67 -1.59 16 2 C 0.17 3.36 6.70 24.63 0.16 3.53 16 3 C -0.32 -7.14 5.51 -20.19 -0.11 -7.26 16 4 C 0.54 15.18 5.07 68.64 0.35 15.53 16 5 O -0.54 -18.37 16.86 19.28 0.33 -18.04 16 6 O -0.35 -9.92 10.00 -58.39 -0.58 -10.50 16 7 C 0.07 2.20 5.38 71.98 0.39 2.58 16 8 C -0.08 -2.72 5.59 30.59 0.17 -2.55 16 9 C -0.09 -3.67 5.67 71.98 0.41 -3.27 16 10 S -0.18 -9.75 21.44 -56.49 -1.21 -10.96 16 11 C -0.54 -31.13 9.50 67.95 0.65 -30.49 16 12 H 0.07 4.09 7.80 -2.91 -0.02 4.07 16 13 C 0.02 0.88 5.49 84.86 0.47 1.35 16 14 N -0.91 -54.54 13.22 21.65 0.29 -54.25 16 15 Si 0.99 43.99 29.55 68.60 2.03 46.01 16 16 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 17 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 18 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 19 C -0.06 -1.03 5.89 29.88 0.18 -0.85 16 20 C -0.15 -1.48 6.24 30.88 0.19 -1.28 16 21 C 0.05 0.44 7.14 72.14 0.52 0.96 16 22 O -0.31 -5.10 10.40 -75.78 -0.79 -5.89 16 23 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.07 1.42 6.96 -2.39 -0.02 1.40 16 26 H 0.07 2.04 8.13 -2.39 -0.02 2.02 16 27 H 0.07 1.97 8.13 -2.39 -0.02 1.96 16 28 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 29 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 30 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 31 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 32 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 33 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.14 0.47 8.14 -2.38 -0.02 0.45 16 38 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -71.96 337.43 5.13 -66.83 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 1.04 Total: 10.13 kcal Atomic # 6 Polarization: -27.36 SS G_CDS: 4.03 Total: -23.33 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: 0.29 Total: -54.25 kcal Atomic # 8 Polarization: -33.39 SS G_CDS: -1.05 Total: -34.43 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: -9.75 SS G_CDS: -1.21 Total: -10.96 kcal Total: -71.96 5.13 -66.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805516676.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.630 kcal (2) G-P(sol) polarization free energy of solvation -71.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds