Wall clock time and date at job start Tue Mar 31 2020 06:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86806 * 120.00146 * 2 1 4 4 H 1.48505 * 109.46871 * 269.99680 * 3 2 1 5 5 H 1.48502 * 109.47150 * 29.99695 * 3 2 1 6 6 H 1.48500 * 109.47114 * 150.00161 * 3 2 1 7 7 C 1.38802 * 120.00139 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99639 * 359.97438 * 7 2 1 9 9 S 1.76197 * 120.00099 * 180.02562 * 7 2 1 10 10 C 1.81001 * 99.99983 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47129 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46945 * 180.02562 * 11 10 9 13 13 O 1.45205 * 109.46797 * 179.97438 * 12 11 10 14 14 C 1.34230 * 116.99605 * 180.02562 * 13 12 11 15 15 O 1.20825 * 120.00357 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99752 * 180.02562 * 14 13 12 17 17 H 1.09002 * 115.56732 * 34.41315 * 16 14 13 18 18 C 1.53192 * 117.56224 * 248.56235 * 16 14 13 19 19 C 1.52099 * 59.76943 * 252.59678 * 18 16 14 20 20 C 1.53711 * 121.74463 * 111.08276 * 19 18 16 21 21 C 1.54706 * 103.69204 * 143.51927 * 20 19 18 22 22 O 1.44491 * 104.87330 * 23.82986 * 21 20 19 23 23 C 1.44641 * 105.46328 * 320.02700 * 22 21 20 24 24 H 0.96999 * 119.99664 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46933 * 59.99939 * 10 9 7 26 26 H 1.08995 * 109.47261 * 300.00202 * 10 9 7 27 27 H 1.08994 * 109.47172 * 60.00355 * 11 10 9 28 28 H 1.09005 * 109.47323 * 300.00119 * 11 10 9 29 29 H 1.08994 * 109.47051 * 60.00091 * 12 11 10 30 30 H 1.08995 * 109.47198 * 300.00053 * 12 11 10 31 31 H 1.08997 * 117.51998 * 0.02562 * 18 16 14 32 32 H 1.09006 * 117.51677 * 145.17267 * 18 16 14 33 33 H 1.09002 * 110.58119 * 262.06200 * 20 19 18 34 34 H 1.08996 * 110.58276 * 24.96757 * 20 19 18 35 35 H 1.08999 * 110.35901 * 142.68370 * 21 20 19 36 36 H 1.09003 * 110.35469 * 264.98270 * 21 20 19 37 37 H 1.08995 * 110.41943 * 280.89021 * 23 22 21 38 38 H 1.08995 * 110.42003 * 158.42603 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7723 -1.2020 0.0001 10 6 4.0866 -2.9845 -0.0001 11 6 5.5958 -3.2363 -0.0002 12 6 5.8614 -4.7431 -0.0011 13 8 7.2937 -4.9820 -0.0019 14 6 7.6979 -6.2620 -0.0032 15 8 6.8821 -7.1532 -0.0033 16 6 9.1694 -6.5874 -0.0034 17 1 9.8038 -5.8975 0.5531 18 6 9.7544 -7.2238 -1.2682 19 6 9.5644 -8.0564 -0.0096 20 6 8.5138 -9.1757 0.0687 21 6 9.2010 -10.2635 0.9277 22 8 10.1887 -9.5522 1.7063 23 6 10.7596 -8.5753 0.8054 24 1 -0.4849 0.8401 -0.0004 25 1 3.6440 -3.4314 -0.8904 26 1 3.6434 -3.4318 0.8895 27 1 6.0388 -2.7895 0.8898 28 1 6.0387 -2.7891 -0.8902 29 1 5.4185 -5.1896 -0.8913 30 1 5.4185 -5.1906 0.8885 31 1 9.0748 -7.4067 -2.1005 32 1 10.7736 -6.9522 -1.5434 33 1 7.6078 -8.8173 0.5575 34 1 8.2877 -9.5592 -0.9262 35 1 8.4748 -10.7436 1.5836 36 1 9.6830 -11.0031 0.2883 37 1 11.4919 -9.0455 0.1491 38 1 11.2184 -7.7619 1.3675 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805530664.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:03 Heat of formation + Delta-G solvation = -116.245750 kcal Electronic energy + Delta-G solvation = -19528.081791 eV Core-core repulsion = 16269.544761 eV Total energy + Delta-G solvation = -3258.537030 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.107 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.17104 -39.68065 -37.18163 -36.01315 -33.64870 -32.47473 -30.70036 -28.21901 -26.89752 -25.69674 -24.54962 -23.13006 -21.52240 -21.17013 -19.80351 -17.99923 -17.40551 -16.83554 -16.68663 -16.30118 -16.14582 -15.50760 -15.03032 -14.81265 -14.57545 -14.01700 -13.61560 -13.31391 -12.95945 -12.83881 -12.79813 -12.59232 -12.44360 -11.90535 -11.57116 -11.38519 -11.25307 -11.12492 -11.01556 -10.99987 -10.75034 -10.42488 -10.38172 -10.14624 -9.96703 -9.82990 -9.04375 -8.63799 -7.00488 -6.31789 -4.05352 1.85780 2.33206 2.97372 3.13244 3.27514 3.42401 3.51845 3.57121 3.97757 4.06148 4.25959 4.28186 4.47912 4.63599 4.77200 4.80887 4.98971 4.99906 5.02237 5.07118 5.09806 5.13208 5.13987 5.30849 5.34637 5.39246 5.42808 5.58374 5.64187 5.70216 5.88080 6.05104 6.29950 6.35728 6.40574 6.55057 7.61209 7.91824 8.40995 9.13513 10.77594 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.049759 B = 0.002382 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.571695 B =11752.560722 C =12029.161259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.092 3.908 3 Si 0.862 3.138 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.237 1.237 7 C -0.505 4.505 8 H 0.089 0.911 9 S -0.206 6.206 10 C -0.084 4.084 11 C -0.101 4.101 12 C 0.073 3.927 13 O -0.351 6.351 14 C 0.492 3.508 15 O -0.503 6.503 16 C -0.150 4.150 17 H 0.139 0.861 18 C -0.128 4.128 19 C -0.131 4.131 20 C -0.132 4.132 21 C 0.045 3.955 22 O -0.373 6.373 23 C 0.083 3.917 24 H 0.271 0.729 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.107 0.893 32 H 0.115 0.885 33 H 0.112 0.888 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.602 -17.026 -1.298 28.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.117 4.117 3 Si 0.687 3.313 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.161 1.161 7 C -0.652 4.652 8 H 0.107 0.893 9 S 0.022 5.978 10 C -0.233 4.233 11 C -0.140 4.140 12 C -0.002 4.002 13 O -0.267 6.267 14 C 0.336 3.664 15 O -0.392 6.392 16 C -0.169 4.169 17 H 0.157 0.843 18 C -0.164 4.164 19 C -0.131 4.131 20 C -0.169 4.169 21 C -0.032 4.032 22 O -0.292 6.292 23 C 0.006 3.994 24 H 0.081 0.919 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.125 0.875 32 H 0.134 0.866 33 H 0.130 0.870 34 H 0.098 0.902 35 H 0.111 0.889 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 22.906 -16.316 -1.064 28.143 hybrid contribution -1.057 -0.106 -0.273 1.096 sum 21.849 -16.423 -1.337 27.366 Atomic orbital electron populations 1.69937 1.05917 1.27776 1.48049 1.24798 0.94529 0.99042 0.93292 0.86670 0.81740 0.83189 0.79742 1.19320 1.20026 1.16138 1.22118 0.86936 0.97512 1.58663 0.89301 1.84169 1.11846 1.04256 1.97556 1.22945 0.95952 1.00131 1.04227 1.21332 0.95954 0.92236 1.04434 1.23251 0.76068 0.98070 1.02829 1.86464 1.28834 1.28219 1.83205 1.22488 0.90633 0.81031 0.72296 1.90576 1.55475 1.47469 1.45683 1.21753 0.91417 0.97675 1.06047 0.84294 1.23009 1.02873 0.99944 0.90623 1.22307 0.99086 0.90973 1.00747 1.22776 0.99298 0.93102 1.01749 1.23521 0.90762 0.94480 0.94410 1.89182 1.55032 1.50344 1.34596 1.22821 0.92943 0.91928 0.91735 0.91906 0.91025 0.90960 0.90222 0.90250 0.90973 0.90922 0.87467 0.86629 0.86962 0.90158 0.88875 0.92279 0.90993 0.88629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.59 13.97 55.49 0.78 -25.82 16 2 C 0.09 2.67 5.50 -17.43 -0.10 2.58 16 3 Si 0.86 21.34 27.74 -169.99 -4.72 16.62 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.24 -5.74 6.74 56.52 0.38 -5.36 16 7 C -0.50 -14.54 10.04 30.94 0.31 -14.23 16 8 H 0.09 2.72 8.03 -52.49 -0.42 2.30 16 9 S -0.21 -4.95 19.41 -107.50 -2.09 -7.04 16 10 C -0.08 -1.59 5.67 37.16 0.21 -1.38 16 11 C -0.10 -1.53 5.60 -26.73 -0.15 -1.68 16 12 C 0.07 0.99 5.47 37.16 0.20 1.20 16 13 O -0.35 -4.61 10.22 -39.26 -0.40 -5.01 16 14 C 0.49 5.99 7.74 36.01 0.28 6.27 16 15 O -0.50 -7.11 13.10 -18.75 -0.25 -7.36 16 16 C -0.15 -1.29 6.18 -92.12 -0.57 -1.86 16 17 H 0.14 0.95 8.14 -51.93 -0.42 0.53 16 18 C -0.13 -0.82 10.02 -27.09 -0.27 -1.09 16 19 C -0.13 -1.03 2.50 -154.69 -0.39 -1.42 16 20 C -0.13 -1.17 5.96 -25.46 -0.15 -1.33 16 21 C 0.04 0.36 7.65 38.06 0.29 0.65 16 22 O -0.37 -3.69 11.65 -35.23 -0.41 -4.10 16 23 C 0.08 0.58 7.44 37.51 0.28 0.86 16 24 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 25 H 0.07 1.35 8.14 -51.91 -0.42 0.92 16 26 H 0.07 1.36 8.14 -51.92 -0.42 0.94 16 27 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.07 0.97 8.13 -51.93 -0.42 0.54 16 30 H 0.07 0.99 8.13 -51.93 -0.42 0.56 16 31 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.11 1.28 5.48 -51.93 -0.28 1.00 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.10 0.56 8.12 -51.93 -0.42 0.14 16 LS Contribution 332.58 15.07 5.01 5.01 Total: -1.00 -32.49 332.58 -7.90 -40.39 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -5.78 Total: -1.26 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: -0.05 Total: -11.43 kcal Atomic # 7 Polarization: -26.59 SS G_CDS: 0.78 Total: -25.82 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -1.06 Total: -16.47 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.72 Total: 16.62 kcal Atomic # 16 Polarization: -4.95 SS G_CDS: -2.09 Total: -7.04 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.49 -7.90 -40.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805530664.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.859 kcal (2) G-P(sol) polarization free energy of solvation -32.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds