Wall clock time and date at job start Tue Mar 31 2020 06:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86794 * 120.00050 * 2 1 4 4 H 1.48505 * 109.47179 * 269.99918 * 3 2 1 5 5 H 1.48498 * 109.47366 * 30.00177 * 3 2 1 6 6 H 1.48503 * 109.47139 * 150.00247 * 3 2 1 7 7 C 1.38804 * 120.00120 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99959 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99826 * 359.97438 * 7 2 1 10 10 C 1.80995 * 100.00153 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47331 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47040 * 179.97438 * 11 10 9 13 13 O 1.45206 * 109.46750 * 180.02562 * 12 11 10 14 14 C 1.34229 * 116.99266 * 179.97438 * 13 12 11 15 15 O 1.20821 * 120.00731 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.99331 * 179.97438 * 14 13 12 17 17 H 1.08999 * 115.56556 * 12.92082 * 16 14 13 18 18 C 1.53187 * 117.51811 * 158.69974 * 16 14 13 19 19 C 1.52111 * 59.76974 * 107.47348 * 18 16 14 20 20 C 1.53705 * 121.74046 * 111.09274 * 19 18 16 21 21 C 1.54696 * 103.69676 * 143.47162 * 20 19 18 22 22 O 1.44494 * 104.86659 * 23.84937 * 21 20 19 23 23 C 1.44643 * 105.46476 * 320.02131 * 22 21 20 24 24 H 0.96994 * 119.99919 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47095 * 59.99750 * 10 9 7 26 26 H 1.09000 * 109.46750 * 300.00009 * 10 9 7 27 27 H 1.09004 * 109.46871 * 59.99612 * 11 10 9 28 28 H 1.09000 * 109.47209 * 299.99725 * 11 10 9 29 29 H 1.08998 * 109.47027 * 59.99966 * 12 11 10 30 30 H 1.09003 * 109.47179 * 299.99513 * 12 11 10 31 31 H 1.09004 * 117.51856 * 214.89344 * 18 16 14 32 32 H 1.08992 * 117.52637 * 0.05494 * 18 16 14 33 33 H 1.08995 * 110.58723 * 262.03032 * 20 19 18 34 34 H 1.09001 * 110.57849 * 24.92363 * 20 19 18 35 35 H 1.09004 * 110.36342 * 142.69200 * 21 20 19 36 36 H 1.08996 * 110.36268 * 265.00202 * 21 20 19 37 37 H 1.08997 * 110.42038 * 280.88304 * 23 22 21 38 38 H 1.08999 * 110.41814 * 158.41582 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4479 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9793 -5.3243 -0.0012 12 6 3.1514 -6.3078 -0.0018 13 8 2.6421 -7.6676 -0.0031 14 6 3.5485 -8.6576 -0.0043 15 8 4.7283 -8.3967 -0.0039 16 6 3.0946 -10.0947 -0.0050 17 1 2.0389 -10.2543 -0.2244 18 6 4.0881 -11.1505 -0.4998 19 6 3.7589 -11.0432 0.9814 20 6 2.9626 -12.1349 1.7138 21 6 3.6155 -12.1866 3.1153 22 8 4.2197 -10.8858 3.2910 23 6 4.7927 -10.5501 2.0060 24 1 -0.4850 0.8400 0.0004 25 1 3.1245 -3.7314 0.8894 26 1 3.1244 -3.7313 -0.8905 27 1 1.3709 -5.4840 -0.8914 28 1 1.3705 -5.4847 0.8886 29 1 3.7601 -6.1481 0.8881 30 1 3.7599 -6.1473 -0.8919 31 1 3.6856 -12.0046 -1.0446 32 1 5.0699 -10.8056 -0.8238 33 1 1.9116 -11.8563 1.7908 34 1 3.0696 -13.0933 1.2058 35 1 2.8584 -12.3593 3.8803 36 1 4.3764 -12.9661 3.1507 37 1 5.7424 -11.0663 1.8665 38 1 4.9286 -9.4720 1.9203 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805530666.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:07 Heat of formation + Delta-G solvation = -121.109043 kcal Electronic energy + Delta-G solvation = -19556.295989 eV Core-core repulsion = 16297.548071 eV Total energy + Delta-G solvation = -3258.747918 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.107 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.14072 -39.65915 -37.15941 -35.95251 -33.50447 -32.44414 -30.82428 -28.00178 -26.94220 -25.58535 -24.47821 -23.24488 -21.36306 -20.94723 -19.77232 -17.97471 -17.40768 -16.95625 -16.71830 -16.28946 -16.01982 -15.47355 -14.82071 -14.65292 -14.48960 -14.08242 -13.63401 -13.25970 -13.04759 -12.93218 -12.54046 -12.45088 -12.12385 -11.93967 -11.45072 -11.35282 -11.15701 -11.01809 -10.95372 -10.91975 -10.74259 -10.65682 -10.36136 -10.28645 -10.09426 -9.63438 -9.07749 -8.35978 -6.56706 -6.24891 -3.95963 1.84153 2.42662 3.18810 3.21267 3.22122 3.28838 3.51916 3.63980 3.87204 4.13754 4.20005 4.24527 4.42733 4.67258 4.69695 4.93834 5.01796 5.09564 5.12258 5.16789 5.19471 5.21933 5.26459 5.37185 5.39732 5.46482 5.48401 5.50752 5.60321 5.76783 5.89214 6.15583 6.38367 6.41731 6.44483 6.66583 7.59000 7.64675 8.34780 9.21470 10.83305 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.037620 B = 0.002413 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.104092 B =11599.120812 C =11663.241935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.071 3.929 3 Si 0.920 3.080 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.518 4.518 8 H 0.073 0.927 9 S -0.124 6.124 10 C -0.114 4.114 11 C -0.098 4.098 12 C 0.073 3.927 13 O -0.349 6.349 14 C 0.491 3.509 15 O -0.510 6.510 16 C -0.151 4.151 17 H 0.138 0.862 18 C -0.123 4.123 19 C -0.131 4.131 20 C -0.121 4.121 21 C 0.045 3.955 22 O -0.371 6.371 23 C 0.075 3.925 24 H 0.268 0.732 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.589 -26.312 1.124 27.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.746 3.254 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.666 4.666 8 H 0.092 0.908 9 S 0.104 5.896 10 C -0.263 4.263 11 C -0.136 4.136 12 C -0.002 4.002 13 O -0.265 6.265 14 C 0.335 3.665 15 O -0.399 6.399 16 C -0.170 4.170 17 H 0.155 0.845 18 C -0.160 4.160 19 C -0.132 4.132 20 C -0.158 4.158 21 C -0.032 4.032 22 O -0.289 6.289 23 C -0.002 4.002 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.644 -26.117 1.335 26.754 hybrid contribution 1.857 1.337 -0.295 2.307 sum 7.501 -24.780 1.040 25.911 Atomic orbital electron populations 1.70019 1.05930 1.27416 1.47134 1.25024 0.95105 0.99140 0.94527 0.86141 0.79441 0.81417 0.78384 1.20243 1.20725 1.19655 1.22696 0.94590 0.90663 1.58674 0.90838 1.84656 1.08791 0.99236 1.96880 1.23178 1.03445 0.96316 1.03347 1.21289 0.96431 0.91563 1.04356 1.23313 0.97846 0.76404 1.02643 1.86459 1.40051 1.16931 1.83076 1.22388 0.84292 0.87506 0.72326 1.90646 1.18532 1.84942 1.45804 1.21819 1.01307 0.86206 1.07713 0.84463 1.23070 0.99990 0.98470 0.94450 1.22261 1.00059 0.98291 0.92561 1.22487 1.00236 0.97523 0.95565 1.23463 0.96951 0.86233 0.96562 1.89229 1.74423 1.34555 1.30725 1.22951 0.94206 1.02248 0.80784 0.92244 0.91703 0.91738 0.90332 0.90296 0.91064 0.91064 0.86731 0.86830 0.89628 0.89499 0.88714 0.91974 0.90938 0.88032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.98 13.22 55.49 0.73 -25.24 16 2 C 0.07 2.02 5.49 -17.43 -0.10 1.93 16 3 Si 0.92 21.59 29.55 -169.99 -5.02 16.56 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.52 -14.87 9.50 30.94 0.29 -14.58 16 8 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 9 S -0.12 -3.24 21.44 -107.50 -2.30 -5.54 16 10 C -0.11 -2.30 5.67 37.16 0.21 -2.09 16 11 C -0.10 -1.63 5.60 -26.73 -0.15 -1.78 16 12 C 0.07 1.08 5.47 37.16 0.20 1.28 16 13 O -0.35 -4.98 10.22 -39.25 -0.40 -5.38 16 14 C 0.49 6.38 7.08 36.01 0.25 6.64 16 15 O -0.51 -7.58 14.46 -18.75 -0.27 -7.85 16 16 C -0.15 -1.39 6.19 -92.12 -0.57 -1.96 16 17 H 0.14 1.04 8.14 -51.93 -0.42 0.61 16 18 C -0.12 -0.85 9.82 -27.09 -0.27 -1.12 16 19 C -0.13 -1.07 2.48 -154.69 -0.38 -1.46 16 20 C -0.12 -0.73 6.88 -25.47 -0.18 -0.90 16 21 C 0.04 0.32 7.65 38.05 0.29 0.61 16 22 O -0.37 -4.15 11.65 -35.23 -0.41 -4.56 16 23 C 0.07 0.76 7.09 37.51 0.27 1.02 16 24 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.06 1.29 8.14 -51.92 -0.42 0.87 16 26 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 27 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 29 H 0.07 1.05 8.13 -51.93 -0.42 0.62 16 30 H 0.07 1.03 8.13 -51.93 -0.42 0.60 16 31 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.11 0.87 7.84 -51.93 -0.41 0.47 16 33 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.10 1.25 5.91 -51.93 -0.31 0.94 16 LS Contribution 336.48 15.07 5.07 5.07 Total: -1.00 -32.97 336.48 -8.48 -41.45 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -5.75 Total: -2.10 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: -0.12 Total: -12.41 kcal Atomic # 7 Polarization: -25.98 SS G_CDS: 0.73 Total: -25.24 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -1.08 Total: -17.78 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -3.24 SS G_CDS: -2.30 Total: -5.54 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.97 -8.48 -41.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805530666.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.663 kcal (2) G-P(sol) polarization free energy of solvation -32.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds