Wall clock time and date at job start Tue Mar 31 2020 06:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86794 * 120.00050 * 2 1 4 4 H 1.48505 * 109.47179 * 269.99918 * 3 2 1 5 5 H 1.48498 * 109.47366 * 30.00177 * 3 2 1 6 6 H 1.48503 * 109.47139 * 150.00247 * 3 2 1 7 7 C 1.38804 * 120.00120 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99959 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99826 * 359.97438 * 7 2 1 10 10 C 1.80995 * 100.00153 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47331 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47040 * 179.97438 * 11 10 9 13 13 O 1.45206 * 109.46750 * 180.02562 * 12 11 10 14 14 C 1.34229 * 116.99266 * 179.97438 * 13 12 11 15 15 O 1.20821 * 120.00731 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.99331 * 179.97438 * 14 13 12 17 17 H 1.08999 * 115.56556 * 12.92082 * 16 14 13 18 18 C 1.53187 * 117.51811 * 158.69974 * 16 14 13 19 19 C 1.52111 * 59.76974 * 107.47348 * 18 16 14 20 20 C 1.53705 * 121.74046 * 111.09274 * 19 18 16 21 21 C 1.54696 * 103.69676 * 143.47162 * 20 19 18 22 22 O 1.44494 * 104.86659 * 23.84937 * 21 20 19 23 23 C 1.44643 * 105.46476 * 320.02131 * 22 21 20 24 24 H 0.96994 * 119.99919 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47095 * 59.99750 * 10 9 7 26 26 H 1.09000 * 109.46750 * 300.00009 * 10 9 7 27 27 H 1.09004 * 109.46871 * 59.99612 * 11 10 9 28 28 H 1.09000 * 109.47209 * 299.99725 * 11 10 9 29 29 H 1.08998 * 109.47027 * 59.99966 * 12 11 10 30 30 H 1.09003 * 109.47179 * 299.99513 * 12 11 10 31 31 H 1.09004 * 117.51856 * 214.89344 * 18 16 14 32 32 H 1.08992 * 117.52637 * 0.05494 * 18 16 14 33 33 H 1.08995 * 110.58723 * 262.03032 * 20 19 18 34 34 H 1.09001 * 110.57849 * 24.92363 * 20 19 18 35 35 H 1.09004 * 110.36342 * 142.69200 * 21 20 19 36 36 H 1.08996 * 110.36268 * 265.00202 * 21 20 19 37 37 H 1.08997 * 110.42038 * 280.88304 * 23 22 21 38 38 H 1.08999 * 110.41814 * 158.41582 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4479 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9793 -5.3243 -0.0012 12 6 3.1514 -6.3078 -0.0018 13 8 2.6421 -7.6676 -0.0031 14 6 3.5485 -8.6576 -0.0043 15 8 4.7283 -8.3967 -0.0039 16 6 3.0946 -10.0947 -0.0050 17 1 2.0389 -10.2543 -0.2244 18 6 4.0881 -11.1505 -0.4998 19 6 3.7589 -11.0432 0.9814 20 6 2.9626 -12.1349 1.7138 21 6 3.6155 -12.1866 3.1153 22 8 4.2197 -10.8858 3.2910 23 6 4.7927 -10.5501 2.0060 24 1 -0.4850 0.8400 0.0004 25 1 3.1245 -3.7314 0.8894 26 1 3.1244 -3.7313 -0.8905 27 1 1.3709 -5.4840 -0.8914 28 1 1.3705 -5.4847 0.8886 29 1 3.7601 -6.1481 0.8881 30 1 3.7599 -6.1473 -0.8919 31 1 3.6856 -12.0046 -1.0446 32 1 5.0699 -10.8056 -0.8238 33 1 1.9116 -11.8563 1.7908 34 1 3.0696 -13.0933 1.2058 35 1 2.8584 -12.3593 3.8803 36 1 4.3764 -12.9661 3.1507 37 1 5.7424 -11.0663 1.8665 38 1 4.9286 -9.4720 1.9203 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805530666.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:06 Heat of formation + Delta-G solvation = -140.744368 kcal Electronic energy + Delta-G solvation = -19557.147441 eV Core-core repulsion = 16297.548071 eV Total energy + Delta-G solvation = -3259.599370 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.107 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.02761 -40.48334 -38.14139 -36.79061 -34.94256 -34.59868 -31.37776 -28.87088 -28.20687 -27.58832 -25.48940 -23.79305 -22.77597 -21.75578 -20.52233 -19.58795 -18.87450 -17.92718 -17.67739 -17.14957 -16.91380 -16.72907 -16.26181 -16.03615 -15.92411 -15.12828 -14.68207 -14.39982 -14.20967 -13.87363 -13.80708 -13.40252 -13.31324 -13.12159 -12.95661 -12.65909 -12.49734 -12.42829 -12.40595 -12.03368 -11.72142 -11.62227 -11.56782 -11.45494 -11.16410 -10.96503 -10.79276 -10.38931 -8.70477 -8.39690 -6.16642 0.90247 1.24300 1.38849 1.39496 1.50410 1.79929 2.25341 2.54494 2.94839 2.98059 3.20265 3.27611 3.46480 3.64491 3.77735 3.80009 3.85874 3.93034 4.10528 4.21716 4.28140 4.40107 4.43236 4.47629 4.53288 4.63980 4.69999 4.77303 4.82971 4.92804 4.97059 4.99940 5.08679 5.09459 5.37881 5.38784 5.76515 6.16197 6.61101 7.02674 8.69776 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.037620 B = 0.002413 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.104092 B =11599.120812 C =11663.241935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.016 3.984 3 Si 0.995 3.005 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.264 1.264 7 C -0.541 4.541 8 H 0.074 0.926 9 S -0.184 6.184 10 C -0.091 4.091 11 C -0.086 4.086 12 C 0.081 3.919 13 O -0.356 6.356 14 C 0.485 3.515 15 O -0.534 6.534 16 C -0.167 4.167 17 H 0.157 0.843 18 C -0.101 4.101 19 C -0.132 4.132 20 C -0.112 4.112 21 C 0.035 3.965 22 O -0.404 6.404 23 C 0.070 3.930 24 H 0.272 0.728 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.151 0.849 32 H 0.104 0.896 33 H 0.089 0.911 34 H 0.117 0.883 35 H 0.104 0.896 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.222 -28.016 0.632 28.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.190 4.190 3 Si 0.817 3.183 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.188 1.188 7 C -0.689 4.689 8 H 0.092 0.908 9 S 0.044 5.956 10 C -0.240 4.240 11 C -0.124 4.124 12 C 0.005 3.995 13 O -0.272 6.272 14 C 0.330 3.670 15 O -0.425 6.425 16 C -0.186 4.186 17 H 0.174 0.826 18 C -0.137 4.137 19 C -0.132 4.132 20 C -0.149 4.149 21 C -0.041 4.041 22 O -0.324 6.324 23 C -0.007 4.007 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.099 0.901 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.169 0.831 32 H 0.122 0.878 33 H 0.108 0.892 34 H 0.135 0.865 35 H 0.123 0.877 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.272 -27.845 0.842 28.555 hybrid contribution 1.698 1.756 -0.103 2.445 sum 7.969 -26.089 0.739 27.289 Atomic orbital electron populations 1.70145 1.07654 1.28660 1.47824 1.26076 0.96064 1.03129 0.93682 0.84999 0.78133 0.76301 0.78874 1.19195 1.19838 1.18818 1.23050 0.94830 0.91895 1.59085 0.90798 1.84630 1.13045 1.00852 1.97065 1.23061 1.00830 0.96488 1.03657 1.21105 0.96998 0.89883 1.04444 1.23039 0.96662 0.76886 1.02871 1.86452 1.40637 1.16737 1.83401 1.23222 0.83893 0.88571 0.71294 1.90631 1.19499 1.85384 1.46992 1.22017 1.02908 0.83887 1.09767 0.82564 1.23239 0.98896 0.98033 0.93546 1.22335 0.99678 0.98300 0.92930 1.22529 0.99826 0.98012 0.94579 1.23750 0.97673 0.84873 0.97783 1.89187 1.74987 1.36811 1.31406 1.22921 0.95601 1.00672 0.81484 0.91861 0.91468 0.91207 0.90071 0.90432 0.91164 0.90587 0.83138 0.87807 0.89226 0.86485 0.87741 0.90393 0.89854 0.91089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.80 13.22 21.65 0.29 -54.51 16 2 C 0.02 0.89 5.49 84.86 0.47 1.36 16 3 Si 1.00 44.12 29.55 68.60 2.03 46.15 16 4 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 5 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 6 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 7 C -0.54 -31.38 9.50 67.96 0.65 -30.73 16 8 H 0.07 4.13 7.80 -2.91 -0.02 4.11 16 9 S -0.18 -9.85 21.44 -56.49 -1.21 -11.06 16 10 C -0.09 -3.69 5.67 71.98 0.41 -3.28 16 11 C -0.09 -2.83 5.60 30.60 0.17 -2.66 16 12 C 0.08 2.36 5.47 71.98 0.39 2.75 16 13 O -0.36 -9.98 10.22 -51.40 -0.53 -10.51 16 14 C 0.48 12.37 7.08 71.24 0.50 12.88 16 15 O -0.53 -15.97 14.46 21.98 0.32 -15.66 16 16 C -0.17 -2.76 6.19 -11.77 -0.07 -2.84 16 17 H 0.16 1.95 8.14 -2.39 -0.02 1.93 16 18 C -0.10 -1.11 9.82 30.36 0.30 -0.81 16 19 C -0.13 -1.89 2.48 -52.30 -0.13 -2.02 16 20 C -0.11 -1.01 6.88 31.41 0.22 -0.79 16 21 C 0.04 0.43 7.65 72.56 0.56 0.98 16 22 O -0.40 -8.92 11.65 -148.98 -1.74 -10.65 16 23 C 0.07 1.39 7.09 72.21 0.51 1.91 16 24 H 0.27 15.25 8.31 -92.71 -0.77 14.47 16 25 H 0.07 2.67 8.14 -2.40 -0.02 2.65 16 26 H 0.07 2.74 8.14 -2.40 -0.02 2.72 16 27 H 0.08 2.64 8.14 -2.38 -0.02 2.62 16 28 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 29 H 0.07 2.06 8.13 -2.39 -0.02 2.04 16 30 H 0.08 2.15 8.13 -2.39 -0.02 2.13 16 31 H 0.15 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.10 1.40 7.84 -2.39 -0.02 1.38 16 33 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.12 0.37 8.14 -2.39 -0.02 0.36 16 35 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.07 1.83 5.91 -2.39 -0.01 1.81 16 Total: -1.00 -72.66 336.48 4.17 -68.49 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: 1.04 Total: 11.00 kcal Atomic # 6 Polarization: -27.22 SS G_CDS: 3.97 Total: -23.26 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: 0.29 Total: -54.51 kcal Atomic # 8 Polarization: -34.87 SS G_CDS: -1.94 Total: -36.82 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 16 Polarization: -9.85 SS G_CDS: -1.21 Total: -11.06 kcal Total: -72.66 4.17 -68.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805530666.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.256 kcal (2) G-P(sol) polarization free energy of solvation -72.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds