Wall clock time and date at job start Tue Mar 31 2020 05:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31387 * 1 3 3 Si 1.86807 * 120.00106 * 2 1 4 4 H 1.48495 * 109.46859 * 266.04728 * 3 2 1 5 5 H 1.48501 * 109.46786 * 26.04643 * 3 2 1 6 6 H 1.48498 * 109.46960 * 146.04348 * 3 2 1 7 7 C 1.38961 * 120.00001 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00084 * 341.15385 * 7 2 1 9 9 N 1.36940 * 120.00143 * 161.15933 * 7 2 1 10 10 C 1.34778 * 120.00232 * 145.14821 * 9 7 2 11 11 O 1.21596 * 120.00108 * 186.57602 * 10 9 7 12 12 C 1.47531 * 119.99932 * 6.56766 * 10 9 7 13 13 C 1.40084 * 120.58934 * 327.26772 * 12 10 9 14 14 C 1.38322 * 118.31362 * 180.28209 * 13 12 10 15 15 C 1.38356 * 119.38631 * 359.46388 * 14 13 12 16 16 N 1.31934 * 121.14972 * 0.29728 * 15 14 13 17 17 C 1.31929 * 121.84697 * 359.97438 * 16 15 14 18 18 F 1.35101 * 119.76085 * 179.97438 * 17 16 15 19 19 C 1.39706 * 119.99890 * 325.14085 * 9 7 2 20 20 C 1.38978 * 120.07888 * 313.47594 * 19 9 7 21 21 C 1.38084 * 119.91909 * 179.80846 * 20 19 9 22 22 C 1.38311 * 120.07871 * 0.44453 * 21 20 19 23 23 C 1.38311 * 120.16005 * 359.78822 * 22 21 20 24 24 C 1.38083 * 120.07973 * 359.97438 * 23 22 21 25 25 H 0.97000 * 119.99721 * 359.97438 * 1 2 3 26 26 H 1.08008 * 120.84299 * 0.02562 * 13 12 10 27 27 H 1.08001 * 120.30421 * 179.73672 * 14 13 12 28 28 H 1.07997 * 119.42805 * 180.27652 * 15 14 13 29 29 H 1.08000 * 120.04460 * 359.97438 * 20 19 9 30 30 H 1.08000 * 119.95934 * 180.20376 * 21 20 19 31 31 H 1.07999 * 119.91970 * 179.75897 * 22 21 20 32 32 H 1.08001 * 119.96501 * 179.97438 * 23 22 21 33 33 H 1.07999 * 120.03979 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6178 0.0000 4 1 2.5790 1.9981 -1.3967 5 1 1.4060 2.6754 0.6148 6 1 3.5011 1.4657 0.7820 7 6 2.0087 -1.2034 0.0005 8 1 1.5121 -2.1136 0.3031 9 7 3.3230 -1.2354 -0.3824 10 6 4.1786 -2.0881 0.2154 11 8 5.3667 -2.0348 -0.0382 12 6 3.6738 -3.0860 1.1776 13 6 2.5706 -2.7973 1.9912 14 6 2.1404 -3.7651 2.8810 15 6 2.7988 -4.9809 2.9322 16 7 3.8327 -5.2306 2.1516 17 6 4.2856 -4.3400 1.2901 18 9 5.3480 -4.6402 0.5114 19 6 3.7771 -0.3842 -1.3930 20 6 3.0529 -0.2545 -2.5720 21 6 3.5026 0.5907 -3.5671 22 6 4.6770 1.3007 -3.3951 23 6 5.4029 1.1705 -2.2250 24 6 4.9567 0.3308 -1.2236 25 1 -0.4850 0.8401 0.0004 26 1 2.0712 -1.8417 1.9284 27 1 1.2957 -3.5750 3.5265 28 1 2.4607 -5.7387 3.6235 29 1 2.1381 -0.8121 -2.7089 30 1 2.9387 0.6945 -4.4822 31 1 5.0284 1.9581 -4.1766 32 1 6.3197 1.7261 -2.0942 33 1 5.5241 0.2293 -0.3104 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000808323882.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:28 Heat of formation + Delta-G solvation = -1.061635 kcal Electronic energy + Delta-G solvation = -22395.940114 eV Core-core repulsion = 18915.786337 eV Total energy + Delta-G solvation = -3480.153777 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.09687 -41.98566 -40.68595 -39.14416 -36.99519 -34.19749 -33.91757 -32.11671 -31.82305 -30.54425 -27.38477 -25.71586 -24.71866 -23.52832 -23.28709 -21.32918 -20.17070 -18.94836 -18.49865 -18.10026 -17.69853 -17.18718 -16.94541 -16.57360 -16.22800 -15.96161 -15.48225 -15.00497 -14.74956 -14.58006 -14.49460 -14.23358 -14.22787 -14.11637 -13.95455 -13.42470 -13.04154 -12.57462 -12.44934 -12.14786 -11.96968 -11.33318 -11.19472 -10.95567 -10.56190 -10.49497 -10.04307 -9.82239 -9.22751 -8.63406 -6.27461 -0.45620 0.08278 0.38472 0.47998 1.23062 1.32759 1.40510 1.71197 2.16652 2.20336 2.54429 2.60286 2.74747 3.06639 3.49850 3.74167 3.97633 4.03939 4.06133 4.09848 4.28607 4.45891 4.55697 4.65093 4.70386 4.72015 5.10526 5.12118 5.14252 5.30087 5.50598 5.52783 5.58035 5.59967 5.88286 5.95951 6.23086 6.53576 6.71701 7.12961 7.47133 8.43902 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.018759 B = 0.007505 C = 0.005907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.236031 B = 3730.007383 C = 4739.147472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.066 3.934 3 Si 0.896 3.104 4 H -0.245 1.245 5 H -0.285 1.285 6 H -0.278 1.278 7 C -0.366 4.366 8 H 0.113 0.887 9 N -0.412 5.412 10 C 0.516 3.484 11 O -0.588 6.588 12 C -0.204 4.204 13 C -0.012 4.012 14 C -0.178 4.178 15 C 0.154 3.846 16 N -0.537 5.537 17 C 0.320 3.680 18 F -0.118 7.118 19 C 0.117 3.883 20 C -0.137 4.137 21 C -0.110 4.110 22 C -0.134 4.134 23 C -0.115 4.115 24 C -0.147 4.147 25 H 0.285 0.715 26 H 0.172 0.828 27 H 0.188 0.812 28 H 0.219 0.781 29 H 0.118 0.882 30 H 0.154 0.846 31 H 0.161 0.839 32 H 0.150 0.850 33 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.927 -0.358 1.510 1.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.169 1.169 5 H -0.211 1.211 6 H -0.203 1.203 7 C -0.492 4.492 8 H 0.130 0.870 9 N -0.124 5.124 10 C 0.308 3.692 11 O -0.472 6.472 12 C -0.211 4.211 13 C -0.037 4.037 14 C -0.198 4.198 15 C -0.003 4.003 16 N -0.253 5.253 17 C 0.167 3.833 18 F -0.097 7.097 19 C 0.024 3.976 20 C -0.157 4.157 21 C -0.128 4.128 22 C -0.152 4.152 23 C -0.133 4.133 24 C -0.168 4.168 25 H 0.096 0.904 26 H 0.189 0.811 27 H 0.206 0.794 28 H 0.235 0.765 29 H 0.136 0.864 30 H 0.171 0.829 31 H 0.179 0.821 32 H 0.167 0.833 33 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.745 -1.057 1.409 2.480 hybrid contribution 0.047 1.342 -0.138 1.350 sum 1.792 0.285 1.272 2.216 Atomic orbital electron populations 1.69730 1.06724 1.29631 1.44064 1.25449 0.95278 0.99752 0.93819 0.86489 0.78951 0.81299 0.81096 1.16864 1.21128 1.20307 1.19281 0.84139 0.96912 1.48818 0.86989 1.41336 1.09446 1.32549 1.29092 1.18395 0.85176 0.83911 0.81760 1.90677 1.16381 1.74550 1.65610 1.20570 1.01951 0.94859 1.03722 1.22846 0.89639 1.02377 0.88879 1.22657 1.03303 0.93726 1.00091 1.23558 0.86867 0.96906 0.92920 1.67152 1.17048 1.33526 1.07524 1.18293 0.85263 0.89573 0.90208 1.91587 1.53073 1.93555 1.71534 1.18212 0.95632 0.94150 0.89605 1.21171 1.01040 1.01362 0.92105 1.21351 0.96980 0.95640 0.98811 1.21489 0.94967 1.00681 0.98086 1.21326 1.00746 0.97905 0.93344 1.21202 0.96925 0.97860 1.00766 0.90420 0.81116 0.79438 0.76458 0.86388 0.82869 0.82110 0.83264 0.87769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -43.32 13.96 21.66 0.30 -43.01 16 2 C 0.07 3.22 5.02 84.93 0.43 3.64 16 3 Si 0.90 40.56 24.01 68.60 1.65 42.20 16 4 H -0.24 -10.75 6.02 99.48 0.60 -10.15 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 6 H -0.28 -13.28 6.85 99.48 0.68 -12.60 16 7 C -0.37 -17.85 6.51 84.07 0.55 -17.30 16 8 H 0.11 5.54 5.72 -2.91 -0.02 5.52 16 9 N -0.41 -20.19 2.46 -462.24 -1.14 -21.32 16 10 C 0.52 25.57 7.14 86.69 0.62 26.19 16 11 O -0.59 -31.51 14.17 -4.02 -0.06 -31.56 16 12 C -0.20 -8.76 5.56 -19.96 -0.11 -8.88 16 13 C -0.01 -0.43 7.75 22.74 0.18 -0.25 16 14 C -0.18 -4.55 10.09 22.32 0.23 -4.32 16 15 C 0.15 3.78 11.17 84.71 0.95 4.72 16 16 N -0.54 -18.42 10.36 -195.64 -2.03 -20.45 16 17 C 0.32 13.22 8.38 85.10 0.71 13.93 16 18 F -0.12 -5.33 16.10 44.97 0.72 -4.61 16 19 C 0.12 5.43 2.83 38.24 0.11 5.54 16 20 C -0.14 -5.75 7.51 22.41 0.17 -5.58 16 21 C -0.11 -3.67 9.63 22.25 0.21 -3.46 16 22 C -0.13 -4.07 10.04 22.30 0.22 -3.84 16 23 C -0.11 -3.98 10.04 22.25 0.22 -3.75 16 24 C -0.15 -6.44 6.92 22.41 0.15 -6.29 16 25 H 0.29 13.42 8.31 -92.71 -0.77 12.65 16 26 H 0.17 6.71 5.38 -2.91 -0.02 6.69 16 27 H 0.19 3.15 8.06 -2.91 -0.02 3.13 16 28 H 0.22 2.92 8.06 -2.91 -0.02 2.90 16 29 H 0.12 5.16 7.84 -2.91 -0.02 5.14 16 30 H 0.15 3.98 8.06 -2.91 -0.02 3.96 16 31 H 0.16 3.42 8.06 -2.91 -0.02 3.39 16 32 H 0.15 4.09 8.06 -2.91 -0.02 4.06 16 33 H 0.10 4.90 7.02 -2.91 -0.02 4.88 16 Total: -1.00 -65.78 284.18 5.11 -60.67 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 1.02 Total: 17.73 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: 4.64 Total: 0.35 kcal Atomic # 7 Polarization: -81.92 SS G_CDS: -2.86 Total: -84.78 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -0.06 Total: -31.56 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 0.72 Total: -4.61 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 1.65 Total: 42.20 kcal Total: -65.78 5.11 -60.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808323882.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.607 kcal (2) G-P(sol) polarization free energy of solvation -65.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds