Wall clock time and date at job start Tue Mar 31 2020 06:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86809 * 119.99675 * 2 1 4 4 H 1.48504 * 109.47035 * 240.00238 * 3 2 1 5 5 H 1.48495 * 109.47288 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46748 * 120.00697 * 3 2 1 7 7 C 1.37870 * 120.00196 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00118 * 173.76216 * 7 2 1 9 9 C 1.50697 * 120.00218 * 353.77297 * 7 2 1 10 10 O 1.45197 * 112.85092 * 62.50820 * 9 7 2 11 11 C 1.34856 * 117.00199 * 65.17716 * 10 9 7 12 12 O 1.21586 * 119.99635 * 357.71711 * 11 10 9 13 13 C 1.46800 * 120.00474 * 177.71063 * 11 10 9 14 14 C 1.35895 * 125.14615 * 179.97438 * 13 11 10 15 15 C 1.46220 * 106.07790 * 179.73920 * 14 13 11 16 16 C 1.39717 * 134.18187 * 180.26011 * 15 14 13 17 17 C 1.36617 * 119.70860 * 179.97438 * 16 15 14 18 18 C 1.38840 * 120.44613 * 0.03856 * 17 16 15 19 19 C 1.37793 * 120.74579 * 359.97438 * 18 17 16 20 20 C 1.39036 * 119.86093 * 359.97438 * 19 18 17 21 21 O 1.34710 * 133.23442 * 180.02562 * 20 19 18 22 22 C 1.53782 * 113.61639 * 193.70788 * 9 7 2 23 23 C 1.53959 * 87.02134 * 89.22694 * 22 9 7 24 24 C 1.53783 * 113.61324 * 291.31650 * 9 7 2 25 25 H 0.97001 * 120.00481 * 5.00857 * 1 2 3 26 26 H 1.07998 * 126.96276 * 0.02562 * 14 13 11 27 27 H 1.08006 * 120.14464 * 359.97438 * 16 15 14 28 28 H 1.08004 * 119.77209 * 180.02562 * 17 16 15 29 29 H 1.07999 * 119.62754 * 180.02562 * 18 17 16 30 30 H 1.08003 * 120.06867 * 179.97438 * 19 18 17 31 31 H 1.09003 * 113.61222 * 203.74613 * 22 9 7 32 32 H 1.09000 * 113.61324 * 334.64529 * 22 9 7 33 33 H 1.09005 * 113.53412 * 270.81664 * 23 22 9 34 34 H 1.08997 * 113.74370 * 139.94309 * 23 22 9 35 35 H 1.08997 * 113.61431 * 25.34333 * 24 9 7 36 36 H 1.08996 * 113.62120 * 156.16473 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6966 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0798 -1.1967 -0.1022 9 6 1.2578 -2.4953 0.1404 10 8 0.3335 -2.7364 -0.9531 11 6 0.8678 -2.9128 -2.1787 12 8 2.0702 -2.8250 -2.3360 13 6 -0.0023 -3.2108 -3.3229 14 6 0.4226 -3.4067 -4.5987 15 6 -0.7779 -3.6776 -5.3883 16 6 -1.0138 -3.9592 -6.7363 17 6 -2.2918 -4.1703 -7.1703 18 6 -3.3564 -4.1060 -6.2814 19 6 -3.1451 -3.8293 -4.9482 20 6 -1.8531 -3.6119 -4.4826 21 8 -1.3457 -3.3289 -3.2672 22 6 2.1659 -3.6957 0.4555 23 6 1.9609 -3.3578 1.9435 24 6 0.6335 -2.6998 1.5309 25 1 -0.4851 0.8368 -0.0733 26 1 1.4412 -3.3740 -4.9562 27 1 -0.1893 -4.0099 -7.4322 28 1 -2.4753 -4.3885 -8.2121 29 1 -4.3613 -4.2755 -6.6387 30 1 -3.9813 -3.7815 -4.2663 31 1 1.7389 -4.6549 0.1627 32 1 3.1934 -3.5671 0.1150 33 1 2.6946 -2.6529 2.3348 34 1 1.8349 -4.2341 2.5792 35 1 0.4258 -1.7684 2.0575 36 1 -0.2141 -3.3851 1.5326 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810856769.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:30 Heat of formation + Delta-G solvation = -27.996967 kcal Electronic energy + Delta-G solvation = -22158.432014 eV Core-core repulsion = 18768.277787 eV Total energy + Delta-G solvation = -3390.154227 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.25375 -39.28692 -37.83683 -37.06982 -34.35089 -32.63056 -32.34556 -30.39594 -29.52581 -26.31983 -24.72470 -24.54295 -22.83698 -22.47287 -21.46754 -20.16028 -18.62729 -17.76942 -17.29838 -16.51585 -16.10296 -15.91621 -15.18465 -14.82125 -14.55753 -14.21112 -13.99509 -13.85182 -13.37245 -13.07996 -12.82040 -12.34540 -12.21435 -11.98516 -11.64379 -11.17658 -11.06737 -10.97141 -10.95495 -10.56354 -10.33317 -10.11447 -9.98895 -9.88864 -9.73817 -8.89334 -8.64415 -8.61813 -8.59754 -8.15093 -6.15049 -4.29082 0.71482 1.36333 2.05692 2.72504 3.26152 3.30847 3.34330 3.66784 3.70601 3.83023 4.31933 4.62840 4.83814 4.87311 5.12159 5.15668 5.22048 5.34786 5.60560 5.65957 5.71942 5.82605 5.84786 6.00685 6.21049 6.22798 6.35808 6.37787 6.42054 6.46993 6.60625 6.64189 6.86991 7.07099 7.20385 7.25034 7.48328 7.63658 7.79708 8.19784 8.73630 8.97065 9.41410 10.88887 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.020671 B = 0.004803 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.258470 B = 5828.735867 C = 6295.055518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.076 3.924 3 Si 0.895 3.105 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.519 4.519 8 H 0.070 0.930 9 C 0.236 3.764 10 O -0.327 6.327 11 C 0.540 3.460 12 O -0.480 6.480 13 C 0.027 3.973 14 C -0.139 4.139 15 C -0.140 4.140 16 C -0.063 4.063 17 C -0.144 4.144 18 C -0.092 4.092 19 C -0.108 4.108 20 C 0.064 3.936 21 O -0.166 6.166 22 C -0.160 4.160 23 C -0.130 4.130 24 C -0.106 4.106 25 H 0.265 0.735 26 H 0.170 0.830 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.134 0.866 30 H 0.134 0.866 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.983 -7.964 -9.506 13.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.131 4.131 3 Si 0.721 3.279 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.556 4.556 8 H 0.088 0.912 9 C 0.203 3.797 10 O -0.242 6.242 11 C 0.382 3.618 12 O -0.370 6.370 13 C -0.022 4.022 14 C -0.158 4.158 15 C -0.141 4.141 16 C -0.081 4.081 17 C -0.162 4.162 18 C -0.110 4.110 19 C -0.126 4.126 20 C 0.015 3.985 21 O -0.066 6.066 22 C -0.198 4.198 23 C -0.168 4.168 24 C -0.144 4.144 25 H 0.075 0.925 26 H 0.187 0.813 27 H 0.146 0.854 28 H 0.146 0.854 29 H 0.152 0.848 30 H 0.152 0.848 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.953 -7.769 -9.144 12.981 hybrid contribution 0.513 1.031 -0.221 1.172 sum -4.440 -6.738 -9.365 12.362 Atomic orbital electron populations 1.70027 1.05921 1.27437 1.45913 1.25110 0.94884 0.99491 0.93594 0.86605 0.79759 0.82433 0.79065 1.19932 1.21058 1.19704 1.20921 0.93703 0.88580 1.52376 0.91151 1.21387 0.85329 0.92563 0.80447 1.86707 1.43997 1.78152 1.15328 1.19091 0.85015 0.74850 0.82860 1.90845 1.13900 1.47079 1.85188 1.21735 0.80335 1.04982 0.95179 1.22660 0.99128 1.03551 0.90510 1.19938 0.92633 1.06459 0.95070 1.20328 0.97444 0.97525 0.92852 1.20731 0.92299 1.03176 0.99979 1.20931 0.99464 0.98889 0.91761 1.20009 0.92596 1.03859 0.96128 1.19884 0.95119 1.00372 0.83087 1.84220 1.20432 1.72253 1.29705 1.23582 1.01261 0.98410 0.96523 1.22560 0.99136 0.99492 0.95577 1.22903 0.95213 1.00060 0.96238 0.92476 0.81260 0.85381 0.85416 0.84845 0.84782 0.92083 0.91567 0.90100 0.92817 0.90585 0.92109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.40 12.79 55.43 0.71 -23.69 16 2 C 0.08 2.09 5.30 -17.82 -0.09 2.00 16 3 Si 0.89 21.23 29.55 -169.99 -5.02 16.21 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.52 -14.27 7.09 -34.44 -0.24 -14.51 16 8 H 0.07 1.96 7.81 -52.48 -0.41 1.55 16 9 C 0.24 6.00 0.47 -90.96 -0.04 5.95 16 10 O -0.33 -8.59 9.77 -42.75 -0.42 -9.01 16 11 C 0.54 13.20 7.50 34.19 0.26 13.45 16 12 O -0.48 -12.25 15.32 -19.33 -0.30 -12.55 16 13 C 0.03 0.56 7.10 -36.96 -0.26 0.30 16 14 C -0.14 -2.45 10.81 -37.22 -0.40 -2.85 16 15 C -0.14 -2.21 6.38 -105.19 -0.67 -2.88 16 16 C -0.06 -0.77 10.06 -39.61 -0.40 -1.17 16 17 C -0.14 -1.47 9.98 -39.94 -0.40 -1.87 16 18 C -0.09 -0.96 10.01 -39.52 -0.40 -1.35 16 19 C -0.11 -1.41 10.07 -39.45 -0.40 -1.80 16 20 C 0.06 1.08 7.41 -38.34 -0.28 0.80 16 21 O -0.17 -3.38 10.60 1.93 0.02 -3.36 16 22 C -0.16 -3.52 6.57 -25.82 -0.17 -3.69 16 23 C -0.13 -2.59 7.81 -25.82 -0.20 -2.79 16 24 C -0.11 -2.44 7.29 -25.91 -0.19 -2.63 16 25 H 0.27 7.21 8.32 -40.82 -0.34 6.87 16 26 H 0.17 2.63 8.06 -52.49 -0.42 2.21 16 27 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 28 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 29 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 30 H 0.13 1.50 8.06 -52.48 -0.42 1.08 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.07 1.47 8.09 -51.93 -0.42 1.05 16 33 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 34 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.08 1.85 7.98 -51.93 -0.41 1.44 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 318.23 15.07 4.80 4.80 Total: -1.00 -31.24 318.23 -8.29 -39.54 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -4.18 Total: 1.10 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -3.90 Total: -13.03 kcal Atomic # 7 Polarization: -24.40 SS G_CDS: 0.71 Total: -23.69 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -0.69 Total: -24.92 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.24 -8.29 -39.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810856769.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.539 kcal (2) G-P(sol) polarization free energy of solvation -31.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds