Wall clock time and date at job start Tue Mar 31 2020 06:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86809 * 119.99675 * 2 1 4 4 H 1.48504 * 109.47035 * 240.00238 * 3 2 1 5 5 H 1.48495 * 109.47288 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46748 * 120.00697 * 3 2 1 7 7 C 1.37870 * 120.00196 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00118 * 173.76216 * 7 2 1 9 9 C 1.50697 * 120.00218 * 353.77297 * 7 2 1 10 10 O 1.45197 * 112.85092 * 62.50820 * 9 7 2 11 11 C 1.34856 * 117.00199 * 65.17716 * 10 9 7 12 12 O 1.21586 * 119.99635 * 357.71711 * 11 10 9 13 13 C 1.46800 * 120.00474 * 177.71063 * 11 10 9 14 14 C 1.35895 * 125.14615 * 179.97438 * 13 11 10 15 15 C 1.46220 * 106.07790 * 179.73920 * 14 13 11 16 16 C 1.39717 * 134.18187 * 180.26011 * 15 14 13 17 17 C 1.36617 * 119.70860 * 179.97438 * 16 15 14 18 18 C 1.38840 * 120.44613 * 0.03856 * 17 16 15 19 19 C 1.37793 * 120.74579 * 359.97438 * 18 17 16 20 20 C 1.39036 * 119.86093 * 359.97438 * 19 18 17 21 21 O 1.34710 * 133.23442 * 180.02562 * 20 19 18 22 22 C 1.53782 * 113.61639 * 193.70788 * 9 7 2 23 23 C 1.53959 * 87.02134 * 89.22694 * 22 9 7 24 24 C 1.53783 * 113.61324 * 291.31650 * 9 7 2 25 25 H 0.97001 * 120.00481 * 5.00857 * 1 2 3 26 26 H 1.07998 * 126.96276 * 0.02562 * 14 13 11 27 27 H 1.08006 * 120.14464 * 359.97438 * 16 15 14 28 28 H 1.08004 * 119.77209 * 180.02562 * 17 16 15 29 29 H 1.07999 * 119.62754 * 180.02562 * 18 17 16 30 30 H 1.08003 * 120.06867 * 179.97438 * 19 18 17 31 31 H 1.09003 * 113.61222 * 203.74613 * 22 9 7 32 32 H 1.09000 * 113.61324 * 334.64529 * 22 9 7 33 33 H 1.09005 * 113.53412 * 270.81664 * 23 22 9 34 34 H 1.08997 * 113.74370 * 139.94309 * 23 22 9 35 35 H 1.08997 * 113.61431 * 25.34333 * 24 9 7 36 36 H 1.08996 * 113.62120 * 156.16473 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6966 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0798 -1.1967 -0.1022 9 6 1.2578 -2.4953 0.1404 10 8 0.3335 -2.7364 -0.9531 11 6 0.8678 -2.9128 -2.1787 12 8 2.0702 -2.8250 -2.3360 13 6 -0.0023 -3.2108 -3.3229 14 6 0.4226 -3.4067 -4.5987 15 6 -0.7779 -3.6776 -5.3883 16 6 -1.0138 -3.9592 -6.7363 17 6 -2.2918 -4.1703 -7.1703 18 6 -3.3564 -4.1060 -6.2814 19 6 -3.1451 -3.8293 -4.9482 20 6 -1.8531 -3.6119 -4.4826 21 8 -1.3457 -3.3289 -3.2672 22 6 2.1659 -3.6957 0.4555 23 6 1.9609 -3.3578 1.9435 24 6 0.6335 -2.6998 1.5309 25 1 -0.4851 0.8368 -0.0733 26 1 1.4412 -3.3740 -4.9562 27 1 -0.1893 -4.0099 -7.4322 28 1 -2.4753 -4.3885 -8.2121 29 1 -4.3613 -4.2755 -6.6387 30 1 -3.9813 -3.7815 -4.2663 31 1 1.7389 -4.6549 0.1627 32 1 3.1934 -3.5671 0.1150 33 1 2.6946 -2.6529 2.3348 34 1 1.8349 -4.2341 2.5792 35 1 0.4258 -1.7684 2.0575 36 1 -0.2141 -3.3851 1.5326 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810856769.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:30 Heat of formation + Delta-G solvation = -44.988952 kcal Electronic energy + Delta-G solvation = -22159.168841 eV Core-core repulsion = 18768.277787 eV Total energy + Delta-G solvation = -3390.891055 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.55068 -41.13670 -39.06170 -38.71253 -36.24071 -34.43124 -33.89562 -31.42592 -30.78126 -28.29952 -26.45998 -26.18308 -24.40255 -23.66293 -22.69428 -21.69205 -20.52559 -19.43373 -18.51340 -18.29880 -17.57062 -17.19347 -16.85707 -16.81686 -16.06537 -15.73312 -15.63503 -15.07483 -14.95489 -14.33264 -14.19938 -14.05215 -13.57294 -13.28651 -13.04007 -12.98240 -12.87766 -12.84466 -12.38584 -12.17050 -11.93797 -11.89183 -11.75534 -11.57422 -11.33280 -10.85571 -10.64387 -10.52646 -9.69422 -9.34010 -8.23498 -6.43944 -0.53559 0.33933 0.76076 1.31899 1.35229 1.39993 1.44817 1.99598 2.20081 2.33741 2.71238 3.04640 3.51878 3.59536 3.87650 3.93506 3.95829 4.08454 4.15523 4.28527 4.30667 4.44604 4.48538 4.62684 4.78404 4.81301 4.89172 5.07159 5.12712 5.26674 5.32682 5.35918 5.36829 5.45635 5.55791 5.61869 5.70479 5.80436 6.04015 6.23054 6.62262 7.05990 7.30710 8.80072 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.020671 B = 0.004803 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.258470 B = 5828.735867 C = 6295.055518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.031 3.969 3 Si 0.953 3.047 4 H -0.279 1.279 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.532 4.532 8 H 0.057 0.943 9 C 0.206 3.794 10 O -0.348 6.348 11 C 0.535 3.465 12 O -0.508 6.508 13 C -0.029 4.029 14 C -0.107 4.107 15 C -0.164 4.164 16 C -0.062 4.062 17 C -0.132 4.132 18 C -0.066 4.066 19 C -0.129 4.129 20 C 0.037 3.963 21 O -0.197 6.197 22 C -0.153 4.153 23 C -0.107 4.107 24 C -0.107 4.107 25 H 0.265 0.735 26 H 0.185 0.815 27 H 0.157 0.843 28 H 0.173 0.827 29 H 0.178 0.822 30 H 0.146 0.854 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.053 0.947 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.004 -8.947 -12.013 16.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.173 4.173 3 Si 0.778 3.222 4 H -0.205 1.205 5 H -0.203 1.203 6 H -0.182 1.182 7 C -0.569 4.569 8 H 0.075 0.925 9 C 0.173 3.827 10 O -0.263 6.263 11 C 0.379 3.621 12 O -0.400 6.400 13 C -0.077 4.077 14 C -0.127 4.127 15 C -0.165 4.165 16 C -0.080 4.080 17 C -0.150 4.150 18 C -0.084 4.084 19 C -0.147 4.147 20 C -0.011 4.011 21 O -0.099 6.099 22 C -0.191 4.191 23 C -0.144 4.144 24 C -0.145 4.145 25 H 0.074 0.926 26 H 0.202 0.798 27 H 0.174 0.826 28 H 0.191 0.809 29 H 0.195 0.805 30 H 0.163 0.837 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.112 0.888 35 H 0.072 0.928 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.972 -8.762 -11.649 15.753 hybrid contribution 0.669 1.228 0.286 1.427 sum -5.304 -7.535 -11.363 14.629 Atomic orbital electron populations 1.70142 1.07163 1.27994 1.47154 1.25828 0.95635 1.02554 0.93264 0.85693 0.78656 0.78728 0.79162 1.20452 1.20336 1.18246 1.21081 0.93245 0.90140 1.52464 0.92498 1.21724 0.86551 0.93252 0.81153 1.86672 1.44561 1.78606 1.16478 1.19534 0.85468 0.73945 0.83120 1.90784 1.14920 1.48661 1.85634 1.21225 0.81014 1.10447 0.95013 1.23013 1.00554 0.99534 0.89559 1.20139 0.91109 1.08559 0.96689 1.20781 0.99633 0.96235 0.91329 1.21324 0.91060 1.00513 1.02062 1.21557 1.01806 0.94895 0.90134 1.20450 0.91459 1.04893 0.97949 1.20583 0.97021 1.01318 0.82177 1.84112 1.20093 1.73700 1.32041 1.23509 0.99947 0.97594 0.98035 1.22482 0.96769 1.00471 0.94706 1.22893 0.97089 0.99576 0.94903 0.92603 0.79803 0.82564 0.80927 0.80454 0.83659 0.91021 0.92516 0.90108 0.88808 0.92789 0.91294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.62 12.79 21.44 0.27 -52.34 16 2 C 0.03 1.75 5.30 84.65 0.45 2.20 16 3 Si 0.95 44.71 29.55 68.60 2.03 46.73 16 4 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.53 -30.47 7.09 25.60 0.18 -30.29 16 8 H 0.06 3.31 7.81 -2.91 -0.02 3.29 16 9 C 0.21 10.93 0.47 -11.01 -0.01 10.92 16 10 O -0.35 -19.39 9.77 -55.93 -0.55 -19.94 16 11 C 0.54 27.86 7.50 70.06 0.53 28.38 16 12 O -0.51 -27.45 15.32 19.56 0.30 -27.15 16 13 C -0.03 -1.30 7.10 23.97 0.17 -1.13 16 14 C -0.11 -3.87 10.81 23.80 0.26 -3.61 16 15 C -0.16 -5.03 6.38 -20.23 -0.13 -5.16 16 16 C -0.06 -1.28 10.06 22.25 0.22 -1.05 16 17 C -0.13 -1.97 9.98 22.03 0.22 -1.75 16 18 C -0.07 -1.06 10.01 22.31 0.22 -0.83 16 19 C -0.13 -3.15 10.07 22.36 0.23 -2.92 16 20 C 0.04 1.25 7.41 23.07 0.17 1.42 16 21 O -0.20 -8.57 10.60 -12.43 -0.13 -8.70 16 22 C -0.15 -6.86 6.57 31.18 0.20 -6.65 16 23 C -0.11 -4.19 7.81 31.18 0.24 -3.95 16 24 C -0.11 -5.01 7.29 31.12 0.23 -4.79 16 25 H 0.26 14.94 8.32 -92.71 -0.77 14.17 16 26 H 0.18 5.79 8.06 -2.91 -0.02 5.77 16 27 H 0.16 2.30 8.06 -2.91 -0.02 2.27 16 28 H 0.17 1.15 8.06 -2.91 -0.02 1.13 16 29 H 0.18 1.32 8.06 -2.91 -0.02 1.30 16 30 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 31 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 32 H 0.06 2.60 8.09 -2.39 -0.02 2.58 16 33 H 0.08 3.16 8.14 -2.38 -0.02 3.14 16 34 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 35 H 0.05 2.72 7.98 -2.39 -0.02 2.70 16 36 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 Total: -1.00 -73.60 318.23 6.20 -67.40 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 1.09 Total: 13.21 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: 3.19 Total: -19.21 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: 0.27 Total: -52.34 kcal Atomic # 8 Polarization: -55.41 SS G_CDS: -0.38 Total: -55.78 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -73.60 6.20 -67.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810856769.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.408 kcal (2) G-P(sol) polarization free energy of solvation -73.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds