Wall clock time and date at job start Tue Mar 31 2020 06:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99665 * 2 1 4 4 H 1.48499 * 109.46988 * 274.44607 * 3 2 1 5 5 H 1.48500 * 109.47298 * 34.44818 * 3 2 1 6 6 H 1.48498 * 109.46759 * 154.44586 * 3 2 1 7 7 C 1.37873 * 120.00218 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00066 * 5.68940 * 7 2 1 9 9 C 1.50697 * 120.00436 * 185.68759 * 7 2 1 10 10 O 1.45198 * 112.84972 * 65.24195 * 9 7 2 11 11 C 1.34823 * 116.99602 * 54.51685 * 10 9 7 12 12 O 1.21568 * 120.00293 * 5.31918 * 11 10 9 13 13 C 1.46925 * 119.99663 * 185.31666 * 11 10 9 14 14 C 1.36137 * 127.15096 * 355.28337 * 13 11 10 15 15 O 1.33774 * 109.83742 * 179.82763 * 14 13 11 16 16 C 1.34918 * 111.36601 * 0.46102 * 15 14 13 17 17 C 1.38969 * 133.09971 * 179.69858 * 16 15 14 18 18 C 1.37843 * 119.97026 * 180.02562 * 17 16 15 19 19 C 1.38682 * 120.65404 * 0.02562 * 18 17 16 20 20 C 1.37854 * 120.19856 * 359.97438 * 19 18 17 21 21 C 1.39091 * 119.62543 * 359.97438 * 20 19 18 22 22 C 1.53779 * 113.69518 * 196.51557 * 9 7 2 23 23 C 1.53789 * 87.08065 * 89.12569 * 22 9 7 24 24 C 1.53781 * 113.61039 * 294.05393 * 9 7 2 25 25 H 0.96996 * 120.00608 * 0.02562 * 1 2 3 26 26 H 1.07997 * 125.08530 * 359.97429 * 14 13 11 27 27 H 1.07992 * 120.01389 * 0.02562 * 17 16 15 28 28 H 1.08003 * 119.67225 * 179.97438 * 18 17 16 29 29 H 1.07998 * 119.90404 * 179.97438 * 19 18 17 30 30 H 1.08000 * 120.18359 * 180.02562 * 20 19 18 31 31 H 1.09001 * 113.61209 * 203.67591 * 22 9 7 32 32 H 1.08996 * 113.61045 * 334.57561 * 22 9 7 33 33 H 1.08996 * 113.61241 * 270.88284 * 23 22 9 34 34 H 1.08993 * 113.68769 * 139.99421 * 23 22 9 35 35 H 1.08996 * 113.62092 * 25.34394 * 24 9 7 36 36 H 1.09000 * 113.61405 * 156.16580 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4025 2.1007 -1.3959 5 1 1.4967 2.6238 0.7920 6 1 3.5904 1.4149 0.6039 7 6 2.0045 -1.1940 0.0005 8 1 1.4686 -2.1271 -0.0918 9 6 3.5060 -1.1972 0.1299 10 8 3.9622 -0.6984 1.4149 11 6 3.4597 -1.2929 2.5156 12 8 2.7378 -2.2649 2.4057 13 6 3.7846 -0.7662 3.8482 14 6 4.6412 0.2496 4.1443 15 8 4.6731 0.4455 5.4672 16 6 3.8628 -0.4195 6.1119 17 6 3.5610 -0.6177 7.4538 18 6 2.6724 -1.6053 7.8212 19 6 2.0725 -2.4088 6.8631 20 6 2.3596 -2.2269 5.5271 21 6 3.2541 -1.2326 5.1452 22 6 4.1588 -2.5273 -0.2817 23 6 4.2299 -1.9600 -1.7094 24 6 4.2288 -0.5617 -1.0695 25 1 -0.4851 0.8400 -0.0004 26 1 5.2083 0.8147 3.4193 27 1 4.0225 0.0017 8.2085 28 1 2.4416 -1.7555 8.8655 29 1 1.3783 -3.1793 7.1645 30 1 1.8920 -2.8525 4.7812 31 1 5.1362 -2.6926 0.1716 32 1 3.4958 -3.3871 -0.1860 33 1 3.3419 -2.1677 -2.3064 34 1 5.1563 -2.2010 -2.2307 35 1 3.6224 0.1653 -1.6097 36 1 5.2248 -0.1884 -0.8312 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810859141.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:33 Heat of formation + Delta-G solvation = -22.684124 kcal Electronic energy + Delta-G solvation = -22533.021096 eV Core-core repulsion = 19143.097251 eV Total energy + Delta-G solvation = -3389.923845 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.43645 -39.40488 -37.81588 -37.22067 -34.40704 -32.70042 -32.35584 -30.34790 -29.39750 -26.67509 -24.98295 -24.20542 -23.28593 -22.28068 -22.11271 -19.69759 -18.62063 -17.76514 -17.19749 -16.58360 -16.18593 -15.73233 -15.37128 -15.23503 -15.03302 -14.23189 -14.02599 -13.81091 -13.68222 -13.10369 -12.82320 -12.55916 -12.24214 -11.89137 -11.77319 -11.60435 -11.06668 -11.02666 -10.90494 -10.69670 -10.19582 -10.06809 -9.90663 -9.82427 -9.56018 -9.06116 -8.77564 -8.61952 -8.58862 -8.14082 -6.22549 -4.28174 0.89342 1.36195 1.96548 2.72097 3.21513 3.29311 3.42762 3.58874 3.71016 4.06394 4.34232 4.55395 4.81763 4.95044 5.00898 5.09619 5.33109 5.43506 5.47905 5.50851 5.54404 5.69752 5.79794 5.91092 6.17211 6.23763 6.27016 6.35764 6.36772 6.45666 6.55839 6.61332 6.66734 6.82070 6.91871 7.13342 7.23640 7.43418 7.77786 8.37957 8.85727 8.98307 9.38198 10.87966 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.020408 B = 0.005625 C = 0.005503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.709124 B = 4976.864436 C = 5087.105078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.083 3.917 3 Si 0.861 3.139 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.236 1.236 7 C -0.503 4.503 8 H 0.086 0.914 9 C 0.200 3.800 10 O -0.370 6.370 11 C 0.530 3.470 12 O -0.479 6.479 13 C -0.203 4.203 14 C 0.073 3.927 15 O -0.188 6.188 16 C 0.043 3.957 17 C -0.109 4.109 18 C -0.097 4.097 19 C -0.137 4.137 20 C -0.056 4.056 21 C -0.090 4.090 22 C -0.146 4.146 23 C -0.124 4.124 24 C -0.131 4.131 25 H 0.267 0.733 26 H 0.224 0.776 27 H 0.131 0.869 28 H 0.134 0.866 29 H 0.131 0.869 30 H 0.141 0.859 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.458 -0.201 10.770 14.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.123 4.123 3 Si 0.688 3.312 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.159 1.159 7 C -0.540 4.540 8 H 0.104 0.896 9 C 0.167 3.833 10 O -0.289 6.289 11 C 0.373 3.627 12 O -0.366 6.366 13 C -0.206 4.206 14 C 0.006 3.994 15 O -0.088 6.088 16 C -0.004 4.004 17 C -0.128 4.128 18 C -0.115 4.115 19 C -0.155 4.155 20 C -0.074 4.074 21 C -0.091 4.091 22 C -0.184 4.184 23 C -0.161 4.161 24 C -0.169 4.169 25 H 0.077 0.923 26 H 0.240 0.760 27 H 0.149 0.851 28 H 0.151 0.849 29 H 0.148 0.852 30 H 0.158 0.842 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.238 -0.224 10.829 14.236 hybrid contribution 0.095 0.933 -0.244 0.969 sum 9.333 0.710 10.585 14.130 Atomic orbital electron populations 1.69918 1.06454 1.27403 1.47542 1.25016 0.94711 0.99351 0.93178 0.87114 0.82349 0.83324 0.78447 1.20378 1.21796 1.15933 1.20789 0.87143 0.95241 1.50780 0.89611 1.21691 0.94784 0.90763 0.76083 1.86588 1.65352 1.60812 1.16121 1.19327 0.78289 0.81732 0.83391 1.90778 1.33087 1.25440 1.87343 1.20630 1.05085 1.02460 0.92406 1.24677 0.97284 0.95979 0.81467 1.83829 1.55648 1.50433 1.18890 1.19588 0.94725 0.92002 0.94055 1.19861 1.01342 1.00936 0.90623 1.20897 0.96092 0.94768 0.99785 1.21096 1.01281 1.00750 0.92334 1.20811 0.94650 0.95544 0.96433 1.19461 1.00184 0.98747 0.90728 1.23339 0.99646 0.99288 0.96134 1.22473 1.01074 0.96407 0.96155 1.23272 0.99498 0.97321 0.96763 0.92334 0.76025 0.85109 0.84857 0.85156 0.84161 0.91707 0.91223 0.89532 0.92382 0.91371 0.91233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.72 13.96 55.43 0.77 -25.94 16 2 C 0.08 2.38 5.47 -17.82 -0.10 2.28 16 3 Si 0.86 21.17 24.60 -169.99 -4.18 16.99 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.24 -5.43 5.57 56.52 0.31 -5.12 16 7 C -0.50 -14.13 7.17 -34.44 -0.25 -14.38 16 8 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 9 C 0.20 4.76 0.25 -90.96 -0.02 4.73 16 10 O -0.37 -8.56 8.02 -40.83 -0.33 -8.89 16 11 C 0.53 12.32 7.51 34.25 0.26 12.57 16 12 O -0.48 -12.45 14.79 -19.32 -0.29 -12.74 16 13 C -0.20 -3.96 6.30 -103.28 -0.65 -4.61 16 14 C 0.07 1.14 11.82 29.98 0.35 1.50 16 15 O -0.19 -2.85 10.53 5.39 0.06 -2.79 16 16 C 0.04 0.66 7.39 -38.57 -0.28 0.38 16 17 C -0.11 -1.35 10.06 -39.45 -0.40 -1.74 16 18 C -0.10 -1.09 10.01 -39.56 -0.40 -1.48 16 19 C -0.14 -1.75 10.04 -39.56 -0.40 -2.15 16 20 C -0.06 -0.94 9.89 -39.41 -0.39 -1.33 16 21 C -0.09 -1.63 6.29 -104.98 -0.66 -2.29 16 22 C -0.15 -3.04 7.09 -25.92 -0.18 -3.23 16 23 C -0.12 -2.30 7.81 -25.91 -0.20 -2.51 16 24 C -0.13 -2.70 6.01 -25.92 -0.16 -2.85 16 25 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 26 H 0.22 2.71 8.06 -52.49 -0.42 2.29 16 27 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 28 H 0.13 1.02 8.06 -52.48 -0.42 0.59 16 29 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 30 H 0.14 2.51 7.55 -52.49 -0.40 2.11 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.07 1.53 8.09 -51.93 -0.42 1.11 16 33 H 0.09 1.67 8.14 -51.93 -0.42 1.24 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 1.47 5.66 -51.93 -0.29 1.17 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 307.22 15.07 4.63 4.63 Total: -1.00 -33.20 307.22 -6.94 -40.14 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -4.14 Total: 3.70 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -3.47 Total: -15.10 kcal Atomic # 7 Polarization: -26.72 SS G_CDS: 0.77 Total: -25.94 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.56 Total: -24.42 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.18 Total: 16.99 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.20 -6.94 -40.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810859141.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.456 kcal (2) G-P(sol) polarization free energy of solvation -33.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds