Wall clock time and date at job start Tue Mar 31 2020 06:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99665 * 2 1 4 4 H 1.48499 * 109.46988 * 274.44607 * 3 2 1 5 5 H 1.48500 * 109.47298 * 34.44818 * 3 2 1 6 6 H 1.48498 * 109.46759 * 154.44586 * 3 2 1 7 7 C 1.37873 * 120.00218 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00066 * 5.68940 * 7 2 1 9 9 C 1.50697 * 120.00436 * 185.68759 * 7 2 1 10 10 O 1.45198 * 112.84972 * 65.24195 * 9 7 2 11 11 C 1.34823 * 116.99602 * 54.51685 * 10 9 7 12 12 O 1.21568 * 120.00293 * 5.31918 * 11 10 9 13 13 C 1.46925 * 119.99663 * 185.31666 * 11 10 9 14 14 C 1.36137 * 127.15096 * 355.28337 * 13 11 10 15 15 O 1.33774 * 109.83742 * 179.82763 * 14 13 11 16 16 C 1.34918 * 111.36601 * 0.46102 * 15 14 13 17 17 C 1.38969 * 133.09971 * 179.69858 * 16 15 14 18 18 C 1.37843 * 119.97026 * 180.02562 * 17 16 15 19 19 C 1.38682 * 120.65404 * 0.02562 * 18 17 16 20 20 C 1.37854 * 120.19856 * 359.97438 * 19 18 17 21 21 C 1.39091 * 119.62543 * 359.97438 * 20 19 18 22 22 C 1.53779 * 113.69518 * 196.51557 * 9 7 2 23 23 C 1.53789 * 87.08065 * 89.12569 * 22 9 7 24 24 C 1.53781 * 113.61039 * 294.05393 * 9 7 2 25 25 H 0.96996 * 120.00608 * 0.02562 * 1 2 3 26 26 H 1.07997 * 125.08530 * 359.97429 * 14 13 11 27 27 H 1.07992 * 120.01389 * 0.02562 * 17 16 15 28 28 H 1.08003 * 119.67225 * 179.97438 * 18 17 16 29 29 H 1.07998 * 119.90404 * 179.97438 * 19 18 17 30 30 H 1.08000 * 120.18359 * 180.02562 * 20 19 18 31 31 H 1.09001 * 113.61209 * 203.67591 * 22 9 7 32 32 H 1.08996 * 113.61045 * 334.57561 * 22 9 7 33 33 H 1.08996 * 113.61241 * 270.88284 * 23 22 9 34 34 H 1.08993 * 113.68769 * 139.99421 * 23 22 9 35 35 H 1.08996 * 113.62092 * 25.34394 * 24 9 7 36 36 H 1.09000 * 113.61405 * 156.16580 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4025 2.1007 -1.3959 5 1 1.4967 2.6238 0.7920 6 1 3.5904 1.4149 0.6039 7 6 2.0045 -1.1940 0.0005 8 1 1.4686 -2.1271 -0.0918 9 6 3.5060 -1.1972 0.1299 10 8 3.9622 -0.6984 1.4149 11 6 3.4597 -1.2929 2.5156 12 8 2.7378 -2.2649 2.4057 13 6 3.7846 -0.7662 3.8482 14 6 4.6412 0.2496 4.1443 15 8 4.6731 0.4455 5.4672 16 6 3.8628 -0.4195 6.1119 17 6 3.5610 -0.6177 7.4538 18 6 2.6724 -1.6053 7.8212 19 6 2.0725 -2.4088 6.8631 20 6 2.3596 -2.2269 5.5271 21 6 3.2541 -1.2326 5.1452 22 6 4.1588 -2.5273 -0.2817 23 6 4.2299 -1.9600 -1.7094 24 6 4.2288 -0.5617 -1.0695 25 1 -0.4851 0.8400 -0.0004 26 1 5.2083 0.8147 3.4193 27 1 4.0225 0.0017 8.2085 28 1 2.4416 -1.7555 8.8655 29 1 1.3783 -3.1793 7.1645 30 1 1.8920 -2.8525 4.7812 31 1 5.1362 -2.6926 0.1716 32 1 3.4958 -3.3871 -0.1860 33 1 3.3419 -2.1677 -2.3064 34 1 5.1563 -2.2010 -2.2307 35 1 3.6224 0.1653 -1.6097 36 1 5.2248 -0.1884 -0.8312 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810859141.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:33 Heat of formation + Delta-G solvation = -43.677557 kcal Electronic energy + Delta-G solvation = -22533.931439 eV Core-core repulsion = 19143.097251 eV Total energy + Delta-G solvation = -3390.834188 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.64389 -41.20503 -39.03671 -38.83667 -36.22771 -34.55517 -33.96422 -31.45555 -30.57640 -28.69596 -26.65677 -25.87504 -24.53054 -23.83985 -23.22611 -21.19982 -20.51946 -19.29840 -18.50470 -18.17663 -17.48460 -17.29025 -17.06817 -16.78013 -16.44478 -16.04665 -15.60153 -15.18047 -14.91577 -14.86270 -14.57914 -13.83765 -13.54284 -13.45844 -13.32131 -12.92420 -12.86787 -12.84923 -12.40975 -12.02450 -12.00599 -11.85902 -11.69713 -11.38578 -11.25046 -11.06255 -10.67893 -10.55973 -9.72560 -9.33565 -8.43180 -6.54298 -0.29186 0.24553 0.65308 1.27356 1.29284 1.49996 1.53721 1.94984 2.24714 2.29630 2.71715 2.95696 3.37718 3.56072 3.78683 3.83918 3.89544 4.08015 4.12343 4.14741 4.30394 4.36591 4.50743 4.52168 4.77008 4.79197 4.84884 5.03349 5.06247 5.12257 5.18228 5.20316 5.35006 5.46791 5.51365 5.53997 5.61918 5.80214 6.00399 6.28734 6.55682 7.11736 7.19651 8.72253 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.020408 B = 0.005625 C = 0.005503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.709124 B = 4976.864436 C = 5087.105078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.022 3.978 3 Si 0.924 3.076 4 H -0.257 1.257 5 H -0.298 1.298 6 H -0.206 1.206 7 C -0.504 4.504 8 H 0.025 0.975 9 C 0.178 3.822 10 O -0.362 6.362 11 C 0.526 3.474 12 O -0.529 6.529 13 C -0.263 4.263 14 C 0.117 3.883 15 O -0.176 6.176 16 C 0.027 3.973 17 C -0.096 4.096 18 C -0.086 4.086 19 C -0.122 4.122 20 C -0.101 4.101 21 C -0.123 4.123 22 C -0.146 4.146 23 C -0.109 4.109 24 C -0.122 4.122 25 H 0.268 0.732 26 H 0.262 0.738 27 H 0.171 0.829 28 H 0.183 0.817 29 H 0.156 0.844 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.039 0.961 33 H 0.069 0.931 34 H 0.106 0.894 35 H 0.059 0.941 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.962 2.060 12.988 18.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.177 4.177 3 Si 0.746 3.254 4 H -0.182 1.182 5 H -0.226 1.226 6 H -0.127 1.127 7 C -0.541 4.541 8 H 0.043 0.957 9 C 0.144 3.856 10 O -0.280 6.280 11 C 0.372 3.628 12 O -0.419 6.419 13 C -0.265 4.265 14 C 0.049 3.951 15 O -0.075 6.075 16 C -0.019 4.019 17 C -0.114 4.114 18 C -0.103 4.103 19 C -0.140 4.140 20 C -0.119 4.119 21 C -0.124 4.124 22 C -0.183 4.183 23 C -0.146 4.146 24 C -0.159 4.159 25 H 0.077 0.923 26 H 0.277 0.723 27 H 0.189 0.811 28 H 0.200 0.800 29 H 0.174 0.826 30 H 0.123 0.877 31 H 0.108 0.892 32 H 0.058 0.942 33 H 0.088 0.912 34 H 0.124 0.876 35 H 0.078 0.922 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 12.771 2.027 13.053 18.374 hybrid contribution -1.054 0.078 -0.761 1.302 sum 11.718 2.104 12.292 17.112 Atomic orbital electron populations 1.70084 1.08631 1.28421 1.50183 1.25981 0.95468 1.03610 0.92685 0.86146 0.82008 0.77669 0.79602 1.18232 1.22556 1.12726 1.20808 0.89999 0.92908 1.50382 0.95708 1.21804 0.92540 0.94019 0.77253 1.86535 1.64963 1.60567 1.15953 1.20005 0.77138 0.81046 0.84649 1.90758 1.35458 1.27693 1.88014 1.20529 1.09126 1.05877 0.90999 1.25260 0.94378 0.93367 0.82114 1.83859 1.55198 1.49988 1.18464 1.19980 0.95099 0.91922 0.94857 1.20474 1.00351 1.00786 0.89788 1.21468 0.94310 0.93003 1.01542 1.21473 1.00679 1.00998 0.90870 1.20781 0.96660 0.96668 0.97818 1.19726 1.01474 1.00129 0.91068 1.23355 0.99828 0.96960 0.98188 1.22418 1.02711 0.94727 0.94716 1.23307 1.00569 0.97884 0.94179 0.92318 0.72284 0.81150 0.79961 0.82619 0.87716 0.89173 0.94210 0.91241 0.87604 0.92205 0.87390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.58 13.96 21.45 0.30 -60.28 16 2 C 0.02 1.33 5.47 84.65 0.46 1.79 16 3 Si 0.92 43.79 24.60 68.60 1.69 45.48 16 4 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 6 H -0.21 -8.63 5.57 99.48 0.55 -8.08 16 7 C -0.50 -30.12 7.17 25.60 0.18 -29.94 16 8 H 0.02 1.72 8.06 -2.91 -0.02 1.69 16 9 C 0.18 8.52 0.25 -11.02 0.00 8.52 16 10 O -0.36 -16.63 8.02 -57.35 -0.46 -17.09 16 11 C 0.53 25.48 7.51 70.10 0.53 26.01 16 12 O -0.53 -29.96 14.79 19.62 0.29 -29.67 16 13 C -0.26 -10.39 6.30 -18.99 -0.12 -10.51 16 14 C 0.12 3.39 11.82 67.33 0.80 4.18 16 15 O -0.18 -4.82 10.53 -3.64 -0.04 -4.86 16 16 C 0.03 0.79 7.39 22.93 0.17 0.96 16 17 C -0.10 -1.97 10.06 22.35 0.22 -1.74 16 18 C -0.09 -1.56 10.01 22.28 0.22 -1.33 16 19 C -0.12 -2.98 10.04 22.29 0.22 -2.76 16 20 C -0.10 -3.57 9.89 22.38 0.22 -3.34 16 21 C -0.12 -4.55 6.29 -20.09 -0.13 -4.67 16 22 C -0.15 -6.10 7.09 31.12 0.22 -5.88 16 23 C -0.11 -3.85 7.81 31.12 0.24 -3.61 16 24 C -0.12 -4.69 6.01 31.12 0.19 -4.51 16 25 H 0.27 16.19 8.31 -92.71 -0.77 15.41 16 26 H 0.26 5.22 8.06 -2.91 -0.02 5.19 16 27 H 0.17 2.17 8.06 -2.91 -0.02 2.14 16 28 H 0.18 1.60 8.06 -2.91 -0.02 1.57 16 29 H 0.16 2.87 8.06 -2.91 -0.02 2.84 16 30 H 0.10 4.29 7.55 -2.91 -0.02 4.27 16 31 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 32 H 0.04 1.86 8.09 -2.39 -0.02 1.84 16 33 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 35 H 0.06 2.41 5.66 -2.39 -0.01 2.40 16 36 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 Total: -1.00 -82.33 307.22 6.16 -76.17 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.95 Total: 17.07 kcal Atomic # 6 Polarization: -30.26 SS G_CDS: 3.43 Total: -26.83 kcal Atomic # 7 Polarization: -60.58 SS G_CDS: 0.30 Total: -60.28 kcal Atomic # 8 Polarization: -51.40 SS G_CDS: -0.21 Total: -51.61 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.69 Total: 45.48 kcal Total: -82.33 6.16 -76.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810859141.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.497 kcal (2) G-P(sol) polarization free energy of solvation -82.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds