Wall clock time and date at job start Tue Mar 31 2020 05:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37805 * 119.99801 * 2 1 4 4 N 1.30264 * 124.73937 * 359.96502 * 3 2 1 5 5 C 1.30825 * 117.27430 * 179.97438 * 4 3 2 6 6 C 1.36829 * 114.01254 * 0.02562 * 5 4 3 7 7 C 1.41734 * 126.11394 * 179.97438 * 6 5 4 8 8 O 1.21681 * 120.00364 * 0.02562 * 7 6 5 9 9 O 1.34948 * 119.99931 * 179.97438 * 7 6 5 10 10 C 1.42905 * 117.00143 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47264 * 180.02562 * 10 9 7 12 12 O 1.42899 * 109.47457 * 64.99865 * 11 10 9 13 13 C 1.42897 * 114.00314 * 179.97438 * 12 11 10 14 14 C 1.50695 * 109.47146 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00154 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00057 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00290 * 180.02562 * 16 14 13 18 18 Si 1.86805 * 119.99951 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46910 * 90.00078 * 18 16 14 20 20 H 1.48500 * 109.47216 * 210.00272 * 18 16 14 21 21 H 1.48497 * 109.47269 * 330.00249 * 18 16 14 22 22 S 1.70919 * 124.73987 * 180.24425 * 3 2 1 23 23 H 1.09006 * 109.46762 * 60.01000 * 1 2 3 24 24 H 1.08997 * 109.46645 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47363 * 300.00537 * 1 2 3 26 26 H 0.96996 * 120.00263 * 179.97438 * 2 1 3 27 27 H 1.07993 * 122.99081 * 179.97438 * 5 4 3 28 28 H 1.09001 * 109.47103 * 300.00505 * 10 9 7 29 29 H 1.09004 * 109.47054 * 60.00009 * 10 9 7 30 30 H 1.09004 * 109.46881 * 185.00370 * 11 10 9 31 31 H 1.09002 * 109.47196 * 304.99885 * 11 10 9 32 32 H 1.08999 * 109.46966 * 300.00604 * 13 12 11 33 33 H 1.09004 * 109.46572 * 60.00010 * 13 12 11 34 34 H 0.97006 * 120.00316 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1540 1.1935 0.0000 4 7 1.5981 2.3715 -0.0007 5 6 2.3939 3.4099 0.0000 6 6 3.7246 3.0917 0.0007 7 6 4.8034 4.0109 0.0009 8 8 4.5831 5.2076 0.0010 9 8 6.0750 3.5590 0.0022 10 6 7.1127 4.5415 0.0030 11 6 8.4748 3.8447 0.0037 12 8 8.6403 3.1209 -1.2173 13 6 9.8871 2.4302 -1.3191 14 6 9.9538 1.7060 -2.6390 15 1 9.1270 1.7675 -3.3311 16 6 11.0704 0.9650 -2.9631 17 7 11.1288 0.3334 -4.1151 18 14 12.5008 0.8592 -1.7663 19 1 12.3017 -0.2986 -0.8580 20 1 13.7668 0.6833 -2.5224 21 1 12.5712 2.1089 -0.9672 22 16 3.8574 1.3348 -0.0060 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.9501 -0.8400 0.0004 27 1 2.0325 4.4276 -0.0009 28 1 7.0240 5.1643 -0.8872 29 1 7.0225 5.1646 0.8928 30 1 9.2644 4.5907 0.0939 31 1 8.5293 3.1543 0.8455 32 1 10.7058 3.1471 -1.2566 33 1 9.9712 1.7106 -0.5047 34 1 11.9143 -0.1883 -4.3430 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815221051.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:13 Heat of formation + Delta-G solvation = -77.231213 kcal Electronic energy + Delta-G solvation = -19363.214317 eV Core-core repulsion = 16002.828741 eV Total energy + Delta-G solvation = -3360.385576 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.55737 -39.69820 -37.23511 -36.32883 -35.90012 -32.69705 -30.96469 -29.80275 -27.80578 -27.45289 -24.98571 -23.05686 -21.91815 -21.67076 -19.70233 -19.63591 -17.67801 -17.04999 -16.70761 -16.55012 -16.13389 -15.60725 -15.20688 -15.07874 -14.78481 -14.51232 -14.10158 -13.70459 -13.36553 -12.96765 -12.71988 -12.53875 -12.40997 -11.72293 -11.63364 -11.14832 -10.88304 -10.69694 -10.68952 -10.48981 -10.38600 -9.91595 -9.87291 -9.55648 -9.20367 -8.90068 -8.50489 -8.09792 -6.12340 -4.11546 0.19766 0.78511 1.49912 2.28900 2.73569 2.96415 3.07094 3.23706 3.30771 3.31861 4.25617 4.34282 4.51186 4.73574 5.00667 5.09076 5.18040 5.19065 5.21792 5.36393 5.43600 5.65288 5.73513 5.84538 6.00332 6.33480 6.55024 6.56182 6.61639 6.97038 7.55107 7.57406 7.87395 7.97267 8.63788 8.99452 9.46524 11.00660 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.019265 B = 0.003549 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.089637 B = 7887.308180 C = 8981.067884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.686 5.686 3 C 0.312 3.688 4 N -0.557 5.557 5 C 0.196 3.804 6 C -0.344 4.344 7 C 0.552 3.448 8 O -0.516 6.516 9 O -0.338 6.338 10 C 0.075 3.925 11 C 0.058 3.942 12 O -0.375 6.375 13 C 0.168 3.832 14 C -0.519 4.519 15 H 0.083 0.917 16 C 0.072 3.928 17 N -0.895 5.895 18 Si 0.876 3.124 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.266 1.266 22 S 0.204 5.796 23 H 0.064 0.936 24 H 0.079 0.921 25 H 0.063 0.937 26 H 0.420 0.580 27 H 0.191 0.809 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.004 0.996 33 H 0.000 1.000 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.141 0.246 12.300 22.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.323 5.323 3 C -0.055 4.055 4 N -0.282 5.282 5 C 0.034 3.966 6 C -0.469 4.469 7 C 0.399 3.601 8 O -0.408 6.408 9 O -0.254 6.254 10 C 0.001 3.999 11 C -0.019 4.019 12 O -0.294 6.294 13 C 0.093 3.907 14 C -0.557 4.557 15 H 0.101 0.899 16 C -0.129 4.129 17 N -0.533 5.533 18 Si 0.703 3.297 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.191 1.191 22 S 0.456 5.544 23 H 0.082 0.918 24 H 0.098 0.902 25 H 0.082 0.918 26 H 0.257 0.743 27 H 0.207 0.793 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.022 0.978 33 H 0.018 0.982 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.114 -0.318 12.020 22.582 hybrid contribution 0.950 0.537 0.708 1.301 sum -18.165 0.219 12.728 22.181 Atomic orbital electron populations 1.21675 0.77722 1.02552 1.02838 1.43743 1.07178 1.03156 1.78235 1.24184 0.95056 0.90679 0.95565 1.66290 1.37826 0.96368 1.27719 1.22175 0.86001 0.98499 0.89924 1.23366 0.96840 0.95775 1.30926 1.18031 0.82330 0.86581 0.73200 1.90877 1.85565 1.16365 1.48002 1.86272 1.14685 1.40586 1.83835 1.22783 0.84422 0.90002 1.02713 1.22408 0.93303 0.96005 0.90227 1.87981 1.40135 1.66424 1.34900 1.20630 0.81357 0.90840 0.97864 1.20884 1.04625 1.29102 1.01084 0.89911 1.24765 0.97949 0.94904 0.95331 1.69875 1.29746 1.32014 1.21709 0.86849 0.82319 0.79091 0.81475 1.19900 1.20776 1.19091 1.84606 0.98687 1.01360 1.69748 0.91769 0.90195 0.91834 0.74279 0.79254 0.90468 0.90467 0.91810 0.93106 0.97847 0.98203 0.92352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.52 10.95 59.85 0.66 1.17 16 2 N -0.69 -4.87 5.84 -69.21 -0.40 -5.27 16 3 C 0.31 3.29 8.05 -87.99 -0.71 2.59 16 4 N -0.56 -6.65 10.06 -14.75 -0.15 -6.80 16 5 C 0.20 2.42 11.08 -18.49 -0.20 2.22 16 6 C -0.34 -4.84 6.32 -38.76 -0.25 -5.09 16 7 C 0.55 9.04 7.73 32.07 0.25 9.29 16 8 O -0.52 -9.06 16.55 -19.40 -0.32 -9.38 16 9 O -0.34 -5.90 9.88 -44.29 -0.44 -6.34 16 10 C 0.08 1.20 5.76 37.16 0.21 1.42 16 11 C 0.06 1.02 6.32 37.16 0.23 1.26 16 12 O -0.38 -8.89 10.29 -40.08 -0.41 -9.30 16 13 C 0.17 4.28 4.76 36.00 0.17 4.45 16 14 C -0.52 -15.52 9.99 -34.44 -0.34 -15.86 16 15 H 0.08 2.72 8.06 -52.49 -0.42 2.29 16 16 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 17 N -0.89 -27.59 13.96 55.43 0.77 -26.82 16 18 Si 0.88 21.27 27.47 -169.99 -4.67 16.60 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 22 S 0.20 2.45 22.99 -107.50 -2.47 -0.02 16 23 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.42 1.95 8.95 -40.82 -0.37 1.59 16 27 H 0.19 2.00 8.04 -52.49 -0.42 1.58 16 28 H 0.08 1.27 8.13 -51.93 -0.42 0.85 16 29 H 0.08 1.02 8.13 -51.93 -0.42 0.60 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.00 0.09 7.20 -51.93 -0.37 -0.28 16 33 H 0.00 0.01 7.57 -51.93 -0.39 -0.39 16 34 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 319.29 15.07 4.81 4.81 Total: -1.00 -35.61 319.29 -7.46 -43.07 By element: Atomic # 1 Polarization: 0.09 SS G_CDS: -4.10 Total: -4.01 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -0.08 Total: 3.47 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.22 Total: -38.89 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -1.17 Total: -25.02 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -2.47 Total: -0.02 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -35.61 -7.46 -43.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815221051.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.164 kcal (2) G-P(sol) polarization free energy of solvation -35.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds