Wall clock time and date at job start Tue Mar 31 2020 05:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37805 * 119.99801 * 2 1 4 4 N 1.30264 * 124.73937 * 359.96502 * 3 2 1 5 5 C 1.30825 * 117.27430 * 179.97438 * 4 3 2 6 6 C 1.36829 * 114.01254 * 0.02562 * 5 4 3 7 7 C 1.41734 * 126.11394 * 179.97438 * 6 5 4 8 8 O 1.21681 * 120.00364 * 0.02562 * 7 6 5 9 9 O 1.34948 * 119.99931 * 179.97438 * 7 6 5 10 10 C 1.42905 * 117.00143 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47264 * 180.02562 * 10 9 7 12 12 O 1.42899 * 109.47457 * 64.99865 * 11 10 9 13 13 C 1.42897 * 114.00314 * 179.97438 * 12 11 10 14 14 C 1.50695 * 109.47146 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00154 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00057 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00290 * 180.02562 * 16 14 13 18 18 Si 1.86805 * 119.99951 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46910 * 90.00078 * 18 16 14 20 20 H 1.48500 * 109.47216 * 210.00272 * 18 16 14 21 21 H 1.48497 * 109.47269 * 330.00249 * 18 16 14 22 22 S 1.70919 * 124.73987 * 180.24425 * 3 2 1 23 23 H 1.09006 * 109.46762 * 60.01000 * 1 2 3 24 24 H 1.08997 * 109.46645 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47363 * 300.00537 * 1 2 3 26 26 H 0.96996 * 120.00263 * 179.97438 * 2 1 3 27 27 H 1.07993 * 122.99081 * 179.97438 * 5 4 3 28 28 H 1.09001 * 109.47103 * 300.00505 * 10 9 7 29 29 H 1.09004 * 109.47054 * 60.00009 * 10 9 7 30 30 H 1.09004 * 109.46881 * 185.00370 * 11 10 9 31 31 H 1.09002 * 109.47196 * 304.99885 * 11 10 9 32 32 H 1.08999 * 109.46966 * 300.00604 * 13 12 11 33 33 H 1.09004 * 109.46572 * 60.00010 * 13 12 11 34 34 H 0.97006 * 120.00316 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1540 1.1935 0.0000 4 7 1.5981 2.3715 -0.0007 5 6 2.3939 3.4099 0.0000 6 6 3.7246 3.0917 0.0007 7 6 4.8034 4.0109 0.0009 8 8 4.5831 5.2076 0.0010 9 8 6.0750 3.5590 0.0022 10 6 7.1127 4.5415 0.0030 11 6 8.4748 3.8447 0.0037 12 8 8.6403 3.1209 -1.2173 13 6 9.8871 2.4302 -1.3191 14 6 9.9538 1.7060 -2.6390 15 1 9.1270 1.7675 -3.3311 16 6 11.0704 0.9650 -2.9631 17 7 11.1288 0.3334 -4.1151 18 14 12.5008 0.8592 -1.7663 19 1 12.3017 -0.2986 -0.8580 20 1 13.7668 0.6833 -2.5224 21 1 12.5712 2.1089 -0.9672 22 16 3.8574 1.3348 -0.0060 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.9501 -0.8400 0.0004 27 1 2.0325 4.4276 -0.0009 28 1 7.0240 5.1643 -0.8872 29 1 7.0225 5.1646 0.8928 30 1 9.2644 4.5907 0.0939 31 1 8.5293 3.1543 0.8455 32 1 10.7058 3.1471 -1.2566 33 1 9.9712 1.7106 -0.5047 34 1 11.9143 -0.1883 -4.3430 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815221051.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:13 Heat of formation + Delta-G solvation = -103.232029 kcal Electronic energy + Delta-G solvation = -19364.341797 eV Core-core repulsion = 16002.828741 eV Total energy + Delta-G solvation = -3361.513056 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.71594 -40.69489 -38.81938 -37.55263 -36.84371 -34.88687 -32.23972 -31.08153 -29.53544 -28.35607 -25.90906 -24.24583 -23.93768 -22.93428 -20.70022 -20.54269 -19.10895 -18.73724 -17.99714 -17.84083 -17.19053 -17.04232 -16.46142 -16.31135 -16.15412 -15.81644 -15.33204 -14.80027 -14.60277 -14.47494 -14.12009 -13.87573 -13.37296 -13.10966 -13.00623 -12.70133 -12.56154 -12.27402 -11.84947 -11.78654 -11.69079 -11.48509 -11.34171 -10.93293 -10.85987 -10.50954 -10.40383 -8.93312 -8.36444 -6.44983 -0.77077 -0.11232 0.55328 1.24485 1.34999 1.38524 1.49291 1.75215 1.99447 2.07634 2.30692 2.95666 2.96765 3.42690 3.89454 3.97280 4.11197 4.16637 4.38320 4.39878 4.51515 4.60265 4.63260 4.71624 4.76947 4.96601 5.00419 5.35275 5.43164 5.57942 5.91899 5.94989 6.58592 6.64669 6.70835 6.72656 7.19276 8.80836 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.019265 B = 0.003549 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.089637 B = 7887.308180 C = 8981.067884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.666 5.666 3 C 0.326 3.674 4 N -0.570 5.570 5 C 0.215 3.785 6 C -0.382 4.382 7 C 0.552 3.448 8 O -0.539 6.539 9 O -0.356 6.356 10 C 0.074 3.926 11 C 0.052 3.948 12 O -0.408 6.408 13 C 0.178 3.822 14 C -0.549 4.549 15 H 0.027 0.973 16 C 0.012 3.988 17 N -0.943 5.943 18 Si 0.958 3.042 19 H -0.258 1.258 20 H -0.275 1.275 21 H -0.242 1.242 22 S 0.188 5.812 23 H 0.058 0.942 24 H 0.116 0.884 25 H 0.061 0.939 26 H 0.433 0.567 27 H 0.204 0.796 28 H 0.065 0.935 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.018 0.982 33 H 0.015 0.985 34 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.112 -0.321 14.553 24.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.303 5.303 3 C -0.042 4.042 4 N -0.296 5.296 5 C 0.052 3.948 6 C -0.506 4.506 7 C 0.401 3.599 8 O -0.433 6.433 9 O -0.272 6.272 10 C 0.000 4.000 11 C -0.025 4.025 12 O -0.328 6.328 13 C 0.103 3.897 14 C -0.586 4.586 15 H 0.045 0.955 16 C -0.185 4.185 17 N -0.582 5.582 18 Si 0.779 3.221 19 H -0.183 1.183 20 H -0.200 1.200 21 H -0.165 1.165 22 S 0.440 5.560 23 H 0.076 0.924 24 H 0.134 0.866 25 H 0.080 0.920 26 H 0.273 0.727 27 H 0.221 0.779 28 H 0.084 0.916 29 H 0.127 0.873 30 H 0.110 0.890 31 H 0.084 0.916 32 H 0.036 0.964 33 H 0.033 0.967 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.126 -0.927 14.282 23.888 hybrid contribution 0.687 0.616 -0.060 0.924 sum -18.439 -0.311 14.222 23.289 Atomic orbital electron populations 1.21913 0.76061 1.04888 1.02413 1.44069 1.08251 1.02603 1.75398 1.24372 0.94586 0.91435 0.93834 1.66380 1.37554 0.96643 1.29072 1.22448 0.85476 0.99315 0.87599 1.23275 0.96755 0.96388 1.34227 1.18292 0.82273 0.86766 0.72618 1.90843 1.85689 1.17159 1.49566 1.86263 1.15441 1.41356 1.84145 1.22870 0.83638 0.89808 1.03697 1.22761 0.94953 0.96580 0.88189 1.87928 1.39362 1.67160 1.38313 1.20366 0.82636 0.91196 0.95509 1.21170 1.03707 1.31044 1.02699 0.95487 1.25874 1.01402 0.93713 0.97561 1.70039 1.31204 1.32784 1.24197 0.85578 0.77260 0.80544 0.78766 1.18251 1.19961 1.16528 1.84550 0.99974 1.00492 1.71002 0.92371 0.86578 0.91981 0.72699 0.77930 0.91622 0.87283 0.88976 0.91567 0.96389 0.96710 0.91774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.73 10.95 127.77 1.40 2.13 16 2 N -0.67 -8.01 5.84 -372.88 -2.18 -10.18 16 3 C 0.33 6.49 8.05 179.43 1.44 7.94 16 4 N -0.57 -13.04 10.06 -200.59 -2.02 -15.06 16 5 C 0.22 5.24 11.08 84.51 0.94 6.18 16 6 C -0.38 -10.88 6.32 22.80 0.14 -10.73 16 7 C 0.55 18.43 7.73 68.68 0.53 18.96 16 8 O -0.54 -19.19 16.55 19.25 0.32 -18.87 16 9 O -0.36 -12.57 9.88 -55.67 -0.55 -13.12 16 10 C 0.07 2.33 5.76 71.98 0.41 2.74 16 11 C 0.05 1.74 6.32 71.98 0.45 2.19 16 12 O -0.41 -19.39 10.29 -144.35 -1.49 -20.87 16 13 C 0.18 8.94 4.76 71.23 0.34 9.28 16 14 C -0.55 -33.76 9.99 25.60 0.26 -33.51 16 15 H 0.03 1.88 8.06 -2.91 -0.02 1.86 16 16 C 0.01 0.73 5.47 84.65 0.46 1.20 16 17 N -0.94 -59.52 13.96 21.45 0.30 -59.23 16 18 Si 0.96 42.89 27.47 68.60 1.88 44.77 16 19 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 21 H -0.24 -9.85 6.54 99.48 0.65 -9.20 16 22 S 0.19 4.52 22.99 -56.49 -1.30 3.22 16 23 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 24 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 25 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.43 2.98 8.95 -92.71 -0.83 2.15 16 27 H 0.20 4.18 8.04 -2.91 -0.02 4.16 16 28 H 0.07 2.19 8.13 -2.39 -0.02 2.18 16 29 H 0.11 2.72 8.13 -2.38 -0.02 2.70 16 30 H 0.09 2.58 8.14 -2.38 -0.02 2.56 16 31 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.02 0.86 7.20 -2.39 -0.02 0.84 16 33 H 0.02 0.71 7.57 -2.39 -0.02 0.69 16 34 H 0.27 15.76 8.31 -92.70 -0.77 14.99 16 Total: -1.00 -79.73 319.29 1.60 -78.13 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: 0.25 Total: 4.83 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: 6.38 Total: 6.37 kcal Atomic # 7 Polarization: -80.57 SS G_CDS: -3.89 Total: -84.46 kcal Atomic # 8 Polarization: -51.15 SS G_CDS: -1.72 Total: -52.87 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 1.88 Total: 44.77 kcal Atomic # 16 Polarization: 4.52 SS G_CDS: -1.30 Total: 3.22 kcal Total: -79.73 1.60 -78.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815221051.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.099 kcal (2) G-P(sol) polarization free energy of solvation -79.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds