Wall clock time and date at job start Tue Mar 31 2020 06:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.41377 * 126.58393 * 2 1 4 4 C 1.34513 * 106.84453 * 179.97438 * 3 2 1 5 5 O 1.34305 * 108.41849 * 0.02562 * 4 3 2 6 6 C 1.34302 * 109.47705 * 359.76940 * 5 4 3 7 7 C 1.50700 * 125.79090 * 180.23618 * 6 5 4 8 8 O 1.45195 * 109.47576 * 270.15865 * 7 6 5 9 9 C 1.34704 * 117.00425 * 179.97438 * 8 7 6 10 10 O 1.21468 * 119.99752 * 0.02562 * 9 8 7 11 11 C 1.47763 * 120.00178 * 180.02562 * 9 8 7 12 12 C 1.39964 * 120.03013 * 359.71829 * 11 9 8 13 13 C 1.38323 * 120.35357 * 179.74134 * 12 11 9 14 14 C 1.37757 * 120.41683 * 0.56857 * 13 12 11 15 15 C 1.40757 * 120.04969 * 359.69004 * 14 13 12 16 16 C 1.41443 * 120.17414 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00209 * 334.92822 * 16 15 14 18 18 C 1.39932 * 119.99794 * 154.92279 * 16 15 14 19 19 N 1.30830 * 120.00271 * 342.59860 * 18 16 15 20 20 Si 1.86798 * 119.99907 * 162.59633 * 18 16 15 21 21 H 1.48507 * 109.47003 * 90.00198 * 20 18 16 22 22 H 1.48503 * 109.47432 * 209.99902 * 20 18 16 23 23 H 1.48501 * 109.47255 * 330.00170 * 20 18 16 24 24 C 1.39052 * 120.03372 * 180.02562 * 11 9 8 25 25 H 1.08997 * 109.47533 * 90.01911 * 1 2 3 26 26 H 1.08999 * 109.47597 * 210.02792 * 1 2 3 27 27 H 1.09007 * 109.46904 * 330.01708 * 1 2 3 28 28 H 1.08005 * 126.57805 * 0.02562 * 3 2 1 29 29 H 1.07998 * 125.79230 * 180.02562 * 4 3 2 30 30 H 1.09002 * 109.47238 * 30.16365 * 7 6 5 31 31 H 1.09007 * 109.47083 * 150.15859 * 7 6 5 32 32 H 1.08003 * 119.82606 * 0.02562 * 12 11 9 33 33 H 1.07995 * 119.79106 * 180.28075 * 13 12 11 34 34 H 1.08004 * 119.97353 * 179.71952 * 14 13 12 35 35 H 0.96999 * 120.00223 * 180.02562 * 19 18 16 36 36 H 1.08005 * 120.20390 * 359.94875 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3496 1.1352 0.0000 4 6 3.6157 0.6809 0.0006 5 8 3.5847 -0.6618 0.0004 6 6 2.3086 -1.0803 0.0047 7 6 1.8520 -2.5164 0.0110 8 8 1.7059 -2.9839 -1.3558 9 6 1.3020 -4.2576 -1.5267 10 8 1.0774 -4.9583 -0.5603 11 6 1.1320 -4.8022 -2.8898 12 6 1.3849 -3.9935 -4.0038 13 6 1.2331 -4.4980 -5.2827 14 6 0.8202 -5.7981 -5.4752 15 6 0.5559 -6.6250 -4.3672 16 6 0.1324 -7.9604 -4.5617 17 1 -0.3706 -8.2397 -5.4757 18 6 0.3651 -8.9197 -3.5699 19 7 1.2503 -8.6915 -2.6339 20 14 -0.5881 -10.5262 -3.5823 21 1 0.1522 -11.5348 -4.3824 22 1 -0.7470 -11.0183 -2.1902 23 1 -1.9271 -10.3026 -4.1842 24 6 0.7145 -6.1167 -3.0670 25 1 -0.3634 -0.0003 -1.0276 26 1 -0.3634 -0.8897 0.5142 27 1 -0.3633 0.8902 0.5136 28 1 2.0367 2.1690 0.0004 29 1 4.5061 1.2921 0.0011 30 1 2.5899 -3.1300 0.5280 31 1 0.8935 -2.5908 0.5248 32 1 1.7047 -2.9714 -3.8641 33 1 1.4351 -3.8673 -6.1358 34 1 0.6997 -6.1833 -6.4769 35 1 1.4119 -9.3567 -1.9467 36 1 0.5142 -6.7433 -2.2104 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816101258.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:36 Heat of formation + Delta-G solvation = -58.439597 kcal Electronic energy + Delta-G solvation = -21277.153859 eV Core-core repulsion = 17885.679541 eV Total energy + Delta-G solvation = -3391.474318 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.68918 -39.79367 -37.42546 -35.89796 -34.26501 -33.76898 -31.41297 -30.27602 -29.53291 -28.35783 -25.77871 -25.27214 -23.02249 -21.56181 -21.01702 -19.88328 -19.84639 -17.91512 -17.27789 -16.61258 -15.95394 -15.92059 -15.85089 -15.04341 -14.73473 -14.33100 -13.77135 -13.43023 -13.20921 -13.14248 -12.83253 -12.76718 -12.64466 -12.44428 -12.18001 -11.70734 -11.52969 -11.21521 -11.11466 -10.80161 -10.54546 -10.38277 -10.25723 -9.75441 -9.72055 -9.58344 -9.25831 -8.54753 -7.77413 -7.57720 -6.84623 -4.45950 1.45956 1.93415 2.38183 2.75943 2.80996 3.05635 3.07834 3.13234 3.48959 3.55905 3.88913 4.55295 4.55672 4.75307 4.80894 5.11168 5.24008 5.35190 5.51525 5.56782 5.65512 5.67608 5.75065 5.94942 6.04741 6.10640 6.38667 6.42397 6.58716 6.86116 6.91424 6.94627 7.04311 7.14619 7.28267 7.65442 7.72494 7.88157 8.07592 8.41523 8.47890 8.74537 8.76596 10.10860 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.028068 B = 0.003546 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.330531 B = 7894.592643 C = 8338.959197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.150 4.150 3 C -0.216 4.216 4 C -0.029 4.029 5 O -0.168 6.168 6 C -0.020 4.020 7 C 0.147 3.853 8 O -0.350 6.350 9 C 0.514 3.486 10 O -0.516 6.516 11 C -0.115 4.115 12 C -0.193 4.193 13 C -0.103 4.103 14 C -0.200 4.200 15 C 0.096 3.904 16 C -0.460 4.460 17 H 0.083 0.917 18 C 0.073 3.927 19 N -0.787 5.787 20 Si 0.911 3.089 21 H -0.269 1.269 22 H -0.275 1.275 23 H -0.260 1.260 24 C -0.088 4.088 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.149 0.851 29 H 0.204 0.796 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.285 0.715 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.987 13.719 5.162 14.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.152 4.152 3 C -0.235 4.235 4 C -0.097 4.097 5 O -0.064 6.064 6 C -0.069 4.069 7 C 0.073 3.927 8 O -0.268 6.268 9 C 0.362 3.638 10 O -0.406 6.406 11 C -0.116 4.116 12 C -0.213 4.213 13 C -0.122 4.122 14 C -0.220 4.220 15 C 0.093 3.907 16 C -0.489 4.489 17 H 0.101 0.899 18 C -0.146 4.146 19 N -0.412 5.412 20 Si 0.735 3.265 21 H -0.194 1.194 22 H -0.200 1.200 23 H -0.183 1.183 24 C -0.107 4.107 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.167 0.833 29 H 0.221 0.779 30 H 0.103 0.897 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.096 0.904 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.286 13.206 5.694 14.438 hybrid contribution -0.218 -0.438 0.197 0.527 sum 1.068 12.768 5.891 14.102 Atomic orbital electron populations 1.20259 0.88931 1.02505 1.02757 1.20320 0.97344 0.91889 1.05605 1.21720 0.92564 0.99779 1.09470 1.24054 0.99802 0.80651 1.05230 1.84035 1.28662 1.22713 1.71003 1.21639 0.81152 0.95197 1.08940 1.20910 1.01941 0.86734 0.83087 1.86684 1.79735 1.30966 1.29442 1.21919 0.72456 0.78250 0.91196 1.90772 1.48251 1.59063 1.42476 1.18806 1.09469 0.95778 0.87549 1.20577 1.10112 0.98666 0.91897 1.20513 1.00697 0.95547 0.95413 1.21198 1.08130 0.94897 0.97795 1.17534 0.89648 0.93177 0.90292 1.19559 1.33651 0.92687 1.03023 0.89933 1.25963 0.93560 1.00850 0.94192 1.69774 1.24353 1.35592 1.11461 0.86267 0.80949 0.80766 0.78543 1.19414 1.19952 1.18350 1.21651 0.98808 0.91340 0.98930 0.90755 0.91491 0.91454 0.83282 0.77903 0.89729 0.88266 0.87894 0.88507 0.88297 0.90394 0.84662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.95 10.18 36.00 0.37 -0.58 16 2 C -0.15 -1.93 6.16 -104.74 -0.65 -2.57 16 3 C -0.22 -2.35 10.87 -39.71 -0.43 -2.78 16 4 C -0.03 -0.31 12.09 29.42 0.36 0.05 16 5 O -0.17 -2.38 10.65 5.71 0.06 -2.32 16 6 C -0.02 -0.29 6.96 -35.62 -0.25 -0.53 16 7 C 0.15 2.32 5.80 36.01 0.21 2.53 16 8 O -0.35 -6.79 9.44 -40.50 -0.38 -7.18 16 9 C 0.51 11.55 7.90 34.62 0.27 11.83 16 10 O -0.52 -12.41 16.12 -19.24 -0.31 -12.72 16 11 C -0.11 -2.77 5.87 -105.06 -0.62 -3.39 16 12 C -0.19 -4.29 9.62 -38.90 -0.37 -4.66 16 13 C -0.10 -2.24 10.01 -39.73 -0.40 -2.64 16 14 C -0.20 -4.71 9.78 -38.81 -0.38 -5.09 16 15 C 0.10 2.50 5.57 -106.87 -0.59 1.91 16 16 C -0.46 -11.88 9.05 -37.73 -0.34 -12.22 16 17 H 0.08 2.01 7.90 -52.48 -0.41 1.60 16 18 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 19 N -0.79 -20.50 10.97 55.55 0.61 -19.89 16 20 Si 0.91 18.43 29.59 -169.99 -5.03 13.40 16 21 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 22 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 23 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 24 C -0.09 -2.31 8.23 -38.43 -0.32 -2.63 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.07 0.70 7.14 -51.93 -0.37 0.33 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.15 1.22 8.06 -52.48 -0.42 0.79 16 29 H 0.20 1.26 8.06 -52.49 -0.42 0.84 16 30 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.10 1.41 7.13 -51.92 -0.37 1.04 16 32 H 0.10 2.10 7.59 -52.48 -0.40 1.70 16 33 H 0.10 1.78 8.06 -52.49 -0.42 1.35 16 34 H 0.10 2.14 8.06 -52.48 -0.42 1.71 16 35 H 0.28 6.80 8.30 -40.82 -0.34 6.47 16 36 H 0.14 3.79 5.77 -52.48 -0.30 3.49 16 LS Contribution 321.81 15.07 4.85 4.85 Total: -1.00 -29.58 321.81 -7.38 -36.97 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -3.95 Total: 5.94 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: -3.23 Total: -19.05 kcal Atomic # 7 Polarization: -20.50 SS G_CDS: 0.61 Total: -19.89 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.63 Total: -22.21 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.40 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.58 -7.38 -36.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816101258.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.474 kcal (2) G-P(sol) polarization free energy of solvation -29.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds