Wall clock time and date at job start Tue Mar 31 2020 06:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.41377 * 126.58393 * 2 1 4 4 C 1.34513 * 106.84453 * 179.97438 * 3 2 1 5 5 O 1.34305 * 108.41849 * 0.02562 * 4 3 2 6 6 C 1.34302 * 109.47705 * 359.76940 * 5 4 3 7 7 C 1.50700 * 125.79090 * 180.23618 * 6 5 4 8 8 O 1.45195 * 109.47576 * 270.15865 * 7 6 5 9 9 C 1.34704 * 117.00425 * 179.97438 * 8 7 6 10 10 O 1.21468 * 119.99752 * 0.02562 * 9 8 7 11 11 C 1.47763 * 120.00178 * 180.02562 * 9 8 7 12 12 C 1.39964 * 120.03013 * 359.71829 * 11 9 8 13 13 C 1.38323 * 120.35357 * 179.74134 * 12 11 9 14 14 C 1.37757 * 120.41683 * 0.56857 * 13 12 11 15 15 C 1.40757 * 120.04969 * 359.69004 * 14 13 12 16 16 C 1.41443 * 120.17414 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00209 * 334.92822 * 16 15 14 18 18 C 1.39932 * 119.99794 * 154.92279 * 16 15 14 19 19 N 1.30830 * 120.00271 * 342.59860 * 18 16 15 20 20 Si 1.86798 * 119.99907 * 162.59633 * 18 16 15 21 21 H 1.48507 * 109.47003 * 90.00198 * 20 18 16 22 22 H 1.48503 * 109.47432 * 209.99902 * 20 18 16 23 23 H 1.48501 * 109.47255 * 330.00170 * 20 18 16 24 24 C 1.39052 * 120.03372 * 180.02562 * 11 9 8 25 25 H 1.08997 * 109.47533 * 90.01911 * 1 2 3 26 26 H 1.08999 * 109.47597 * 210.02792 * 1 2 3 27 27 H 1.09007 * 109.46904 * 330.01708 * 1 2 3 28 28 H 1.08005 * 126.57805 * 0.02562 * 3 2 1 29 29 H 1.07998 * 125.79230 * 180.02562 * 4 3 2 30 30 H 1.09002 * 109.47238 * 30.16365 * 7 6 5 31 31 H 1.09007 * 109.47083 * 150.15859 * 7 6 5 32 32 H 1.08003 * 119.82606 * 0.02562 * 12 11 9 33 33 H 1.07995 * 119.79106 * 180.28075 * 13 12 11 34 34 H 1.08004 * 119.97353 * 179.71952 * 14 13 12 35 35 H 0.96999 * 120.00223 * 180.02562 * 19 18 16 36 36 H 1.08005 * 120.20390 * 359.94875 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3496 1.1352 0.0000 4 6 3.6157 0.6809 0.0006 5 8 3.5847 -0.6618 0.0004 6 6 2.3086 -1.0803 0.0047 7 6 1.8520 -2.5164 0.0110 8 8 1.7059 -2.9839 -1.3558 9 6 1.3020 -4.2576 -1.5267 10 8 1.0774 -4.9583 -0.5603 11 6 1.1320 -4.8022 -2.8898 12 6 1.3849 -3.9935 -4.0038 13 6 1.2331 -4.4980 -5.2827 14 6 0.8202 -5.7981 -5.4752 15 6 0.5559 -6.6250 -4.3672 16 6 0.1324 -7.9604 -4.5617 17 1 -0.3706 -8.2397 -5.4757 18 6 0.3651 -8.9197 -3.5699 19 7 1.2503 -8.6915 -2.6339 20 14 -0.5881 -10.5262 -3.5823 21 1 0.1522 -11.5348 -4.3824 22 1 -0.7470 -11.0183 -2.1902 23 1 -1.9271 -10.3026 -4.1842 24 6 0.7145 -6.1167 -3.0670 25 1 -0.3634 -0.0003 -1.0276 26 1 -0.3634 -0.8897 0.5142 27 1 -0.3633 0.8902 0.5136 28 1 2.0367 2.1690 0.0004 29 1 4.5061 1.2921 0.0011 30 1 2.5899 -3.1300 0.5280 31 1 0.8935 -2.5908 0.5248 32 1 1.7047 -2.9714 -3.8641 33 1 1.4351 -3.8673 -6.1358 34 1 0.6997 -6.1833 -6.4769 35 1 1.4119 -9.3567 -1.9467 36 1 0.5142 -6.7433 -2.2104 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816101258.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:35 Heat of formation + Delta-G solvation = -73.073871 kcal Electronic energy + Delta-G solvation = -21277.788449 eV Core-core repulsion = 17885.679541 eV Total energy + Delta-G solvation = -3392.108908 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.63808 -41.49129 -39.22986 -37.57072 -35.63382 -35.22325 -32.67192 -31.88957 -31.37488 -29.38086 -27.35165 -26.70451 -24.71170 -22.87422 -22.46288 -21.61741 -20.84287 -19.70046 -18.49389 -18.15245 -17.56789 -17.43093 -16.99242 -16.65379 -16.46699 -15.56095 -15.22948 -15.14962 -14.68577 -14.38558 -14.09645 -14.01485 -13.87251 -13.60507 -13.49204 -13.36906 -13.00278 -12.80038 -12.60001 -12.46231 -12.23225 -12.08335 -11.88483 -11.57006 -11.37963 -11.08664 -10.59940 -9.63946 -9.52720 -9.45897 -8.69008 -6.40638 0.08993 0.41005 0.95384 1.38519 1.44696 1.45354 1.54324 1.75636 1.77886 2.17822 2.19769 2.71371 3.53716 3.61359 3.79534 3.89594 3.93803 4.03620 4.15432 4.40875 4.60066 4.60982 4.73706 4.76114 4.81851 4.83772 5.03334 5.10528 5.11421 5.17419 5.21159 5.26866 5.42663 5.57165 5.79292 5.87330 5.99617 6.11288 6.21092 6.51491 6.73390 6.85172 6.87366 8.28677 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.028068 B = 0.003546 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.330531 B = 7894.592643 C = 8338.959197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.145 4.145 3 C -0.226 4.226 4 C -0.018 4.018 5 O -0.191 6.191 6 C -0.061 4.061 7 C 0.145 3.855 8 O -0.348 6.348 9 C 0.519 3.481 10 O -0.541 6.541 11 C -0.128 4.128 12 C -0.183 4.183 13 C -0.098 4.098 14 C -0.202 4.202 15 C 0.067 3.933 16 C -0.493 4.493 17 H 0.089 0.911 18 C 0.030 3.970 19 N -0.827 5.827 20 Si 0.984 3.016 21 H -0.258 1.258 22 H -0.272 1.272 23 H -0.254 1.254 24 C -0.120 4.120 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.091 0.909 28 H 0.179 0.821 29 H 0.247 0.753 30 H 0.081 0.919 31 H 0.110 0.890 32 H 0.127 0.873 33 H 0.140 0.860 34 H 0.117 0.883 35 H 0.288 0.712 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.056 15.903 4.404 16.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.147 4.147 3 C -0.245 4.245 4 C -0.085 4.085 5 O -0.088 6.088 6 C -0.110 4.110 7 C 0.072 3.928 8 O -0.265 6.265 9 C 0.367 3.633 10 O -0.433 6.433 11 C -0.129 4.129 12 C -0.202 4.202 13 C -0.116 4.116 14 C -0.222 4.222 15 C 0.065 3.935 16 C -0.522 4.522 17 H 0.107 0.893 18 C -0.185 4.185 19 N -0.452 5.452 20 Si 0.805 3.195 21 H -0.183 1.183 22 H -0.197 1.197 23 H -0.177 1.177 24 C -0.140 4.140 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.110 0.890 28 H 0.197 0.803 29 H 0.263 0.737 30 H 0.099 0.901 31 H 0.128 0.872 32 H 0.145 0.855 33 H 0.158 0.842 34 H 0.135 0.865 35 H 0.099 0.901 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.360 15.424 4.923 16.247 hybrid contribution -0.148 -0.835 0.433 0.952 sum 1.212 14.589 5.356 15.588 Atomic orbital electron populations 1.20359 0.87832 1.03635 1.02953 1.20742 0.98351 0.92158 1.03423 1.22116 0.92243 1.00623 1.09474 1.25014 1.01560 0.79470 1.02480 1.84012 1.28524 1.24637 1.71651 1.21446 0.82011 0.94679 1.12858 1.21098 1.02664 0.87968 0.81067 1.86640 1.78828 1.28959 1.32096 1.21685 0.72128 0.79068 0.90423 1.90747 1.49394 1.60028 1.43110 1.19054 1.09136 0.95498 0.89251 1.20916 1.08372 0.99332 0.91596 1.20947 0.98886 0.95203 0.96550 1.21513 1.07270 0.95529 0.97891 1.17895 0.90475 0.94112 0.91006 1.19867 1.34997 0.93310 1.04067 0.89324 1.26867 0.93890 1.04344 0.93364 1.69867 1.25952 1.37017 1.12390 0.85167 0.79511 0.76258 0.78610 1.18275 1.19720 1.17735 1.21464 1.01778 0.92338 0.98426 0.90893 0.91803 0.88989 0.80327 0.73742 0.90088 0.87183 0.85547 0.84194 0.86513 0.90116 0.87481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.80 10.18 71.24 0.73 -1.08 16 2 C -0.15 -3.47 6.16 -19.94 -0.12 -3.60 16 3 C -0.23 -4.20 10.87 22.19 0.24 -3.96 16 4 C -0.02 -0.33 12.09 66.97 0.81 0.48 16 5 O -0.19 -5.19 10.65 -2.49 -0.03 -5.21 16 6 C -0.06 -1.75 6.96 24.83 0.17 -1.57 16 7 C 0.14 4.65 5.80 71.24 0.41 5.06 16 8 O -0.35 -13.58 9.44 -56.13 -0.53 -14.11 16 9 C 0.52 23.96 7.90 70.34 0.56 24.51 16 10 O -0.54 -27.20 16.12 19.94 0.32 -26.88 16 11 C -0.13 -6.31 5.87 -20.15 -0.12 -6.42 16 12 C -0.18 -7.88 9.62 22.71 0.22 -7.66 16 13 C -0.10 -4.01 10.01 22.18 0.22 -3.79 16 14 C -0.20 -9.36 9.78 22.77 0.22 -9.14 16 15 C 0.07 3.60 5.57 -21.32 -0.12 3.48 16 16 C -0.49 -26.16 9.05 23.47 0.21 -25.95 16 17 H 0.09 4.39 7.90 -2.91 -0.02 4.37 16 18 C 0.03 1.55 5.14 85.25 0.44 1.99 16 19 N -0.83 -45.02 10.97 21.82 0.24 -44.78 16 20 Si 0.98 38.49 29.59 68.60 2.03 40.52 16 21 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 22 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16 23 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 24 C -0.12 -6.61 8.23 23.02 0.19 -6.42 16 25 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.06 1.29 7.14 -2.39 -0.02 1.27 16 27 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 28 H 0.18 2.16 8.06 -2.91 -0.02 2.13 16 29 H 0.25 1.99 8.06 -2.91 -0.02 1.96 16 30 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.11 3.20 7.13 -2.38 -0.02 3.18 16 32 H 0.13 4.83 7.59 -2.91 -0.02 4.81 16 33 H 0.14 4.52 8.06 -2.91 -0.02 4.50 16 34 H 0.12 4.88 8.06 -2.91 -0.02 4.85 16 35 H 0.29 14.41 8.30 -92.71 -0.77 13.64 16 36 H 0.11 6.42 5.77 -2.91 -0.02 6.41 16 Total: -1.00 -66.71 321.81 7.20 -59.51 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: 1.10 Total: 25.04 kcal Atomic # 6 Polarization: -38.14 SS G_CDS: 4.06 Total: -34.08 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: 0.24 Total: -44.78 kcal Atomic # 8 Polarization: -45.97 SS G_CDS: -0.23 Total: -46.21 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 2.03 Total: 40.52 kcal Total: -66.71 7.20 -59.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816101258.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.566 kcal (2) G-P(sol) polarization free energy of solvation -66.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds