Wall clock time and date at job start Tue Mar 31 2020 06:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34520 * 125.78645 * 2 1 4 4 C 1.41385 * 106.83705 * 179.73610 * 3 2 1 5 5 C 1.34507 * 106.84366 * 0.02562 * 4 3 2 6 6 C 1.50704 * 125.79126 * 179.97438 * 5 4 3 7 7 O 1.45207 * 109.46829 * 89.99799 * 6 5 4 8 8 C 1.34707 * 116.99761 * 180.02562 * 7 6 5 9 9 O 1.21463 * 119.99761 * 359.97438 * 8 7 6 10 10 C 1.47763 * 119.99859 * 180.02562 * 8 7 6 11 11 C 1.39975 * 120.03091 * 359.72026 * 10 8 7 12 12 C 1.38310 * 120.35203 * 179.78835 * 11 10 8 13 13 C 1.37766 * 120.41772 * 0.47254 * 12 11 10 14 14 C 1.40743 * 120.05212 * 359.78353 * 13 12 11 15 15 C 1.41437 * 120.17742 * 180.02562 * 14 13 12 16 16 H 1.08007 * 119.99951 * 334.92523 * 15 14 13 17 17 C 1.39939 * 120.00274 * 154.92810 * 15 14 13 18 18 N 1.30821 * 119.99630 * 342.58618 * 17 15 14 19 19 Si 1.86797 * 120.00212 * 162.58975 * 17 15 14 20 20 H 1.48504 * 109.47255 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47478 * 119.99500 * 19 17 15 22 22 H 1.48495 * 109.47077 * 239.99934 * 19 17 15 23 23 C 1.39054 * 120.03084 * 180.02562 * 10 8 7 24 24 O 1.34299 * 125.79432 * 179.69429 * 2 1 3 25 25 H 1.09000 * 109.47477 * 90.00121 * 1 2 3 26 26 H 1.09004 * 109.46832 * 210.00029 * 1 2 3 27 27 H 1.09002 * 109.47101 * 329.99762 * 1 2 3 28 28 H 1.08000 * 126.58237 * 359.70920 * 3 2 1 29 29 H 1.08004 * 126.57799 * 179.97438 * 4 3 2 30 30 H 1.09000 * 109.47259 * 209.99647 * 6 5 4 31 31 H 1.08996 * 109.46914 * 330.00639 * 6 5 4 32 32 H 1.08002 * 119.82229 * 0.02562 * 11 10 8 33 33 H 1.07998 * 119.79228 * 180.23333 * 12 11 10 34 34 H 1.07999 * 119.97331 * 179.76276 * 13 12 11 35 35 H 0.96998 * 119.99944 * 180.02562 * 18 17 15 36 36 H 1.08000 * 120.20217 * 359.95639 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6321 0.0062 5 6 3.5814 -0.7120 0.0091 6 6 4.7706 -1.6377 0.0153 7 8 5.1478 -1.9319 1.3863 8 6 6.2014 -2.7513 1.5683 9 8 6.7885 -3.2080 0.6080 10 6 6.6420 -3.0955 2.9360 11 6 5.9688 -2.5658 4.0430 12 6 6.3729 -2.8870 5.3262 13 6 7.4481 -3.7238 5.5299 14 6 8.1408 -4.2620 4.4294 15 6 9.2447 -5.1219 4.6355 16 1 9.8119 -5.0622 5.5527 17 6 9.6022 -6.0500 3.6510 18 7 8.7491 -6.3684 2.7117 19 14 11.2973 -6.8343 3.6782 20 1 12.0674 -6.3089 4.8341 21 1 11.1592 -8.3075 3.8034 22 1 12.0132 -6.5095 2.4184 23 6 7.7298 -3.9409 3.1246 24 8 2.2924 -1.0893 0.0058 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.9665 2.1205 -0.0044 29 1 4.5212 1.2434 0.0075 30 1 4.5124 -2.5644 -0.4973 31 1 5.6057 -1.1597 -0.4967 32 1 5.1270 -1.9057 3.8943 33 1 5.8446 -2.4761 6.1738 34 1 7.7598 -3.9668 6.5350 35 1 8.9967 -7.0119 2.0295 36 1 8.2550 -4.3487 2.2736 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816427901.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:45 Heat of formation + Delta-G solvation = -58.173775 kcal Electronic energy + Delta-G solvation = -21020.475261 eV Core-core repulsion = 17629.012469 eV Total energy + Delta-G solvation = -3391.462791 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.68557 -39.79825 -37.42570 -35.88674 -33.77765 -33.29604 -32.52809 -30.46229 -29.54746 -28.88343 -25.44999 -24.73917 -22.91274 -21.86469 -21.01687 -20.29625 -19.87964 -17.91687 -17.10892 -16.55003 -16.02146 -15.91851 -15.72511 -14.99873 -14.71958 -14.25604 -13.63430 -13.48897 -13.28504 -13.20490 -12.93137 -12.90096 -12.67756 -12.51567 -12.13784 -11.82235 -11.70145 -11.22848 -11.13218 -10.78380 -10.53770 -10.39203 -10.25034 -9.99362 -9.74708 -9.57041 -9.27102 -8.46697 -7.77509 -7.57829 -6.84753 -4.45982 1.43752 1.93181 2.38920 2.70427 2.75208 3.05842 3.09866 3.11839 3.47324 3.55442 3.88955 4.47521 4.55516 4.75236 4.91342 5.01393 5.19719 5.23784 5.28952 5.45078 5.51508 5.65408 5.70040 5.86260 6.00199 6.10580 6.38628 6.40335 6.58533 6.85733 6.91472 6.94508 7.06244 7.14626 7.28265 7.65417 7.72481 7.88292 8.07529 8.41801 8.47532 8.74500 8.76686 10.10796 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.030558 B = 0.003280 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.069522 B = 8534.419225 C = 9067.040943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.007 4.007 3 C -0.217 4.217 4 C -0.178 4.178 5 C -0.017 4.017 6 C 0.147 3.853 7 O -0.351 6.351 8 C 0.515 3.485 9 O -0.516 6.516 10 C -0.115 4.115 11 C -0.193 4.193 12 C -0.103 4.103 13 C -0.200 4.200 14 C 0.095 3.905 15 C -0.460 4.460 16 H 0.083 0.917 17 C 0.073 3.927 18 N -0.787 5.787 19 Si 0.911 3.089 20 H -0.259 1.259 21 H -0.274 1.274 22 H -0.271 1.271 23 C -0.087 4.087 24 O -0.168 6.168 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.149 0.851 29 H 0.152 0.848 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.284 0.716 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.614 10.160 -5.285 15.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.057 4.057 3 C -0.236 4.236 4 C -0.198 4.198 5 C -0.066 4.066 6 C 0.073 3.927 7 O -0.270 6.270 8 C 0.362 3.638 9 O -0.405 6.405 10 C -0.116 4.116 11 C -0.212 4.212 12 C -0.122 4.122 13 C -0.220 4.220 14 C 0.093 3.907 15 C -0.489 4.489 16 H 0.101 0.899 17 C -0.146 4.146 18 N -0.412 5.412 19 Si 0.735 3.265 20 H -0.183 1.183 21 H -0.199 1.199 22 H -0.196 1.196 23 C -0.107 4.107 24 O -0.065 6.065 25 H 0.099 0.901 26 H 0.096 0.904 27 H 0.107 0.893 28 H 0.167 0.833 29 H 0.169 0.831 30 H 0.103 0.897 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.095 0.905 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.583 9.564 -5.807 15.401 hybrid contribution 0.723 -0.228 -0.214 0.788 sum -9.859 9.336 -6.021 14.853 Atomic orbital electron populations 1.20322 0.85009 1.04223 1.03483 1.22521 0.94101 0.84201 1.04918 1.21575 0.92538 0.99444 1.10001 1.21656 0.98488 0.93610 1.05998 1.21816 0.82580 0.94003 1.08223 1.20955 0.91034 0.97778 0.82944 1.86685 1.48266 1.62738 1.29263 1.21917 0.76285 0.74383 0.91209 1.90771 1.55066 1.51638 1.43061 1.18811 1.00912 1.04426 0.87484 1.20580 1.02845 1.05873 0.91934 1.20513 0.97452 0.98837 0.95369 1.21199 0.98411 1.04563 0.97825 1.17543 0.91843 0.91036 0.90302 1.19598 1.11228 1.14980 1.03052 0.89879 1.25969 0.98535 0.95917 0.94187 1.69780 1.34203 1.25649 1.11544 0.86214 0.81889 0.78890 0.79512 1.18306 1.19895 1.19565 1.21657 0.94977 0.95194 0.98856 1.83970 1.16227 1.35093 1.71190 0.90083 0.90371 0.89255 0.83281 0.83058 0.89691 0.88088 0.87883 0.88494 0.88281 0.90452 0.84649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.54 10.42 36.00 0.38 -0.16 16 2 C -0.01 -0.08 7.32 -35.62 -0.26 -0.34 16 3 C -0.22 -2.46 10.81 -39.70 -0.43 -2.89 16 4 C -0.18 -2.30 10.81 -39.70 -0.43 -2.73 16 5 C -0.02 -0.24 6.96 -35.63 -0.25 -0.49 16 6 C 0.15 2.31 6.00 36.01 0.22 2.53 16 7 O -0.35 -6.86 9.44 -40.51 -0.38 -7.24 16 8 C 0.51 11.62 7.90 34.62 0.27 11.89 16 9 O -0.52 -12.45 16.12 -19.24 -0.31 -12.76 16 10 C -0.12 -2.79 5.87 -105.05 -0.62 -3.40 16 11 C -0.19 -4.30 9.62 -38.90 -0.37 -4.68 16 12 C -0.10 -2.25 10.01 -39.73 -0.40 -2.64 16 13 C -0.20 -4.72 9.78 -38.81 -0.38 -5.10 16 14 C 0.10 2.49 5.57 -106.88 -0.59 1.89 16 15 C -0.46 -11.88 9.05 -37.73 -0.34 -12.23 16 16 H 0.08 2.04 7.90 -52.48 -0.41 1.62 16 17 C 0.07 1.81 5.14 -17.35 -0.09 1.72 16 18 N -0.79 -20.54 10.97 55.55 0.61 -19.93 16 19 Si 0.91 18.50 29.59 -169.99 -5.03 13.46 16 20 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 21 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 22 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 23 C -0.09 -2.31 8.23 -38.42 -0.32 -2.63 16 24 O -0.17 -2.48 10.65 5.73 0.06 -2.42 16 25 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 29 H 0.15 1.66 8.06 -52.48 -0.42 1.24 16 30 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.10 2.11 7.59 -52.49 -0.40 1.71 16 33 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 34 H 0.10 2.15 8.06 -52.49 -0.42 1.72 16 35 H 0.28 6.78 8.30 -40.82 -0.34 6.45 16 36 H 0.14 3.81 5.77 -52.49 -0.30 3.51 16 LS Contribution 324.07 15.07 4.88 4.88 Total: -1.00 -29.75 324.07 -7.84 -37.59 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -4.05 Total: 5.68 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -3.61 Total: -19.26 kcal Atomic # 7 Polarization: -20.54 SS G_CDS: 0.61 Total: -19.93 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.63 Total: -22.42 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.46 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.75 -7.84 -37.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816427901.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.588 kcal (2) G-P(sol) polarization free energy of solvation -29.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds