Wall clock time and date at job start Tue Mar 31 2020 06:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34520 * 125.78645 * 2 1 4 4 C 1.41385 * 106.83705 * 179.73610 * 3 2 1 5 5 C 1.34507 * 106.84366 * 0.02562 * 4 3 2 6 6 C 1.50704 * 125.79126 * 179.97438 * 5 4 3 7 7 O 1.45207 * 109.46829 * 89.99799 * 6 5 4 8 8 C 1.34707 * 116.99761 * 180.02562 * 7 6 5 9 9 O 1.21463 * 119.99761 * 359.97438 * 8 7 6 10 10 C 1.47763 * 119.99859 * 180.02562 * 8 7 6 11 11 C 1.39975 * 120.03091 * 359.72026 * 10 8 7 12 12 C 1.38310 * 120.35203 * 179.78835 * 11 10 8 13 13 C 1.37766 * 120.41772 * 0.47254 * 12 11 10 14 14 C 1.40743 * 120.05212 * 359.78353 * 13 12 11 15 15 C 1.41437 * 120.17742 * 180.02562 * 14 13 12 16 16 H 1.08007 * 119.99951 * 334.92523 * 15 14 13 17 17 C 1.39939 * 120.00274 * 154.92810 * 15 14 13 18 18 N 1.30821 * 119.99630 * 342.58618 * 17 15 14 19 19 Si 1.86797 * 120.00212 * 162.58975 * 17 15 14 20 20 H 1.48504 * 109.47255 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47478 * 119.99500 * 19 17 15 22 22 H 1.48495 * 109.47077 * 239.99934 * 19 17 15 23 23 C 1.39054 * 120.03084 * 180.02562 * 10 8 7 24 24 O 1.34299 * 125.79432 * 179.69429 * 2 1 3 25 25 H 1.09000 * 109.47477 * 90.00121 * 1 2 3 26 26 H 1.09004 * 109.46832 * 210.00029 * 1 2 3 27 27 H 1.09002 * 109.47101 * 329.99762 * 1 2 3 28 28 H 1.08000 * 126.58237 * 359.70920 * 3 2 1 29 29 H 1.08004 * 126.57799 * 179.97438 * 4 3 2 30 30 H 1.09000 * 109.47259 * 209.99647 * 6 5 4 31 31 H 1.08996 * 109.46914 * 330.00639 * 6 5 4 32 32 H 1.08002 * 119.82229 * 0.02562 * 11 10 8 33 33 H 1.07998 * 119.79228 * 180.23333 * 12 11 10 34 34 H 1.07999 * 119.97331 * 179.76276 * 13 12 11 35 35 H 0.96998 * 119.99944 * 180.02562 * 18 17 15 36 36 H 1.08000 * 120.20217 * 359.95639 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6321 0.0062 5 6 3.5814 -0.7120 0.0091 6 6 4.7706 -1.6377 0.0153 7 8 5.1478 -1.9319 1.3863 8 6 6.2014 -2.7513 1.5683 9 8 6.7885 -3.2080 0.6080 10 6 6.6420 -3.0955 2.9360 11 6 5.9688 -2.5658 4.0430 12 6 6.3729 -2.8870 5.3262 13 6 7.4481 -3.7238 5.5299 14 6 8.1408 -4.2620 4.4294 15 6 9.2447 -5.1219 4.6355 16 1 9.8119 -5.0622 5.5527 17 6 9.6022 -6.0500 3.6510 18 7 8.7491 -6.3684 2.7117 19 14 11.2973 -6.8343 3.6782 20 1 12.0674 -6.3089 4.8341 21 1 11.1592 -8.3075 3.8034 22 1 12.0132 -6.5095 2.4184 23 6 7.7298 -3.9409 3.1246 24 8 2.2924 -1.0893 0.0058 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.9665 2.1205 -0.0044 29 1 4.5212 1.2434 0.0075 30 1 4.5124 -2.5644 -0.4973 31 1 5.6057 -1.1597 -0.4967 32 1 5.1270 -1.9057 3.8943 33 1 5.8446 -2.4761 6.1738 34 1 7.7598 -3.9668 6.5350 35 1 8.9967 -7.0119 2.0295 36 1 8.2550 -4.3487 2.2736 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816427901.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:44 Heat of formation + Delta-G solvation = -72.721798 kcal Electronic energy + Delta-G solvation = -21021.106110 eV Core-core repulsion = 17629.012469 eV Total energy + Delta-G solvation = -3392.093641 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.66949 -41.50322 -39.23592 -37.57371 -35.63578 -34.23810 -33.51696 -32.22867 -31.39461 -29.95838 -27.30652 -25.91774 -24.50815 -22.88828 -22.83371 -21.62251 -21.27082 -19.71000 -18.49890 -18.10911 -17.51237 -17.26479 -17.14539 -16.60796 -16.41539 -15.48236 -15.23648 -15.00084 -14.70771 -14.40101 -14.05683 -13.91442 -13.84016 -13.77581 -13.50566 -13.31370 -13.01822 -12.82426 -12.71763 -12.58926 -12.22802 -12.07076 -11.89258 -11.56146 -11.39095 -11.11121 -10.93802 -9.64524 -9.46698 -9.42888 -8.69591 -6.41068 0.08249 0.37033 0.94341 1.38139 1.38723 1.44419 1.54550 1.71830 1.74993 2.10918 2.19161 2.70640 3.47174 3.60634 3.79419 3.85794 4.01181 4.06571 4.16929 4.40497 4.55893 4.59625 4.70790 4.75024 4.81085 4.81792 4.99602 5.02961 5.10023 5.14777 5.19063 5.26585 5.42170 5.55309 5.78769 5.86822 5.99283 6.09999 6.20570 6.51216 6.72443 6.84777 6.86828 8.28325 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.030558 B = 0.003280 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.069522 B = 8534.419225 C = 9067.040943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.008 4.008 3 C -0.224 4.224 4 C -0.170 4.170 5 C -0.054 4.054 6 C 0.145 3.855 7 O -0.350 6.350 8 C 0.519 3.481 9 O -0.541 6.541 10 C -0.129 4.129 11 C -0.183 4.183 12 C -0.098 4.098 13 C -0.202 4.202 14 C 0.066 3.934 15 C -0.492 4.492 16 H 0.089 0.911 17 C 0.030 3.970 18 N -0.827 5.827 19 Si 0.985 3.015 20 H -0.251 1.251 21 H -0.265 1.265 22 H -0.270 1.270 23 C -0.120 4.120 24 O -0.193 6.193 25 H 0.099 0.901 26 H 0.078 0.922 27 H 0.114 0.886 28 H 0.180 0.820 29 H 0.168 0.832 30 H 0.082 0.918 31 H 0.116 0.884 32 H 0.127 0.873 33 H 0.141 0.859 34 H 0.117 0.883 35 H 0.288 0.712 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.937 11.886 -4.523 17.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.058 4.058 3 C -0.243 4.243 4 C -0.189 4.189 5 C -0.103 4.103 6 C 0.072 3.928 7 O -0.267 6.267 8 C 0.367 3.633 9 O -0.432 6.432 10 C -0.130 4.130 11 C -0.202 4.202 12 C -0.116 4.116 13 C -0.222 4.222 14 C 0.064 3.936 15 C -0.521 4.521 16 H 0.107 0.893 17 C -0.185 4.185 18 N -0.452 5.452 19 Si 0.805 3.195 20 H -0.174 1.174 21 H -0.190 1.190 22 H -0.195 1.195 23 C -0.140 4.140 24 O -0.091 6.091 25 H 0.117 0.883 26 H 0.097 0.903 27 H 0.133 0.867 28 H 0.198 0.802 29 H 0.185 0.815 30 H 0.100 0.900 31 H 0.134 0.866 32 H 0.145 0.855 33 H 0.158 0.842 34 H 0.135 0.865 35 H 0.099 0.901 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.933 11.316 -5.032 17.198 hybrid contribution 0.899 -0.596 -0.458 1.172 sum -11.034 10.720 -5.491 16.334 Atomic orbital electron populations 1.20569 0.81972 1.05471 1.05038 1.23476 0.95842 0.83587 1.02940 1.21976 0.91603 1.00901 1.09798 1.22028 1.00054 0.93024 1.03808 1.21664 0.82462 0.94409 1.11769 1.21174 0.92432 0.98344 0.80884 1.86638 1.46654 1.61452 1.31969 1.21678 0.76694 0.74456 0.90444 1.90747 1.56098 1.52699 1.43676 1.19060 1.00599 1.04136 0.89188 1.20921 1.02633 1.05025 0.91660 1.20948 0.96597 0.97552 0.96480 1.21514 0.98540 1.04188 0.97943 1.17908 0.92786 0.91886 0.91012 1.19889 1.12192 1.15955 1.04049 0.89340 1.26874 1.02183 0.96110 0.93376 1.69869 1.36254 1.26609 1.12484 0.85113 0.76700 0.78107 0.79563 1.17363 1.18973 1.19491 1.21468 0.96702 0.97417 0.98368 1.83950 1.16495 1.36759 1.71881 0.88255 0.90333 0.86743 0.80227 0.81491 0.90000 0.86626 0.85543 0.84174 0.86493 0.90116 0.87459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.86 10.42 71.23 0.74 -0.12 16 2 C -0.01 -0.17 7.32 24.83 0.18 0.01 16 3 C -0.22 -4.49 10.81 22.19 0.24 -4.25 16 4 C -0.17 -4.09 10.81 22.19 0.24 -3.85 16 5 C -0.05 -1.57 6.96 24.83 0.17 -1.40 16 6 C 0.14 4.59 6.00 71.24 0.43 5.02 16 7 O -0.35 -13.67 9.44 -56.17 -0.53 -14.20 16 8 C 0.52 24.01 7.90 70.34 0.56 24.57 16 9 O -0.54 -27.19 16.12 19.95 0.32 -26.87 16 10 C -0.13 -6.34 5.87 -20.14 -0.12 -6.46 16 11 C -0.18 -7.92 9.62 22.71 0.22 -7.70 16 12 C -0.10 -4.02 10.01 22.17 0.22 -3.80 16 13 C -0.20 -9.37 9.78 22.77 0.22 -9.15 16 14 C 0.07 3.55 5.57 -21.33 -0.12 3.44 16 15 C -0.49 -26.11 9.05 23.47 0.21 -25.89 16 16 H 0.09 4.41 7.90 -2.91 -0.02 4.38 16 17 C 0.03 1.51 5.14 85.26 0.44 1.95 16 18 N -0.83 -45.05 10.97 21.82 0.24 -44.81 16 19 Si 0.98 38.61 29.59 68.60 2.03 40.64 16 20 H -0.25 -9.34 7.11 99.48 0.71 -8.63 16 21 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 22 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 23 C -0.12 -6.60 8.23 23.02 0.19 -6.41 16 24 O -0.19 -5.57 10.65 -2.43 -0.03 -5.60 16 25 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.18 2.37 8.06 -2.91 -0.02 2.34 16 29 H 0.17 3.33 8.06 -2.91 -0.02 3.31 16 30 H 0.08 2.60 8.14 -2.39 -0.02 2.59 16 31 H 0.12 3.26 8.14 -2.39 -0.02 3.24 16 32 H 0.13 4.85 7.59 -2.91 -0.02 4.83 16 33 H 0.14 4.54 8.06 -2.91 -0.02 4.52 16 34 H 0.12 4.89 8.06 -2.91 -0.02 4.87 16 35 H 0.29 14.38 8.30 -92.71 -0.77 13.61 16 36 H 0.11 6.44 5.77 -2.91 -0.02 6.43 16 Total: -1.00 -66.85 324.07 6.96 -59.89 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: 1.10 Total: 25.00 kcal Atomic # 6 Polarization: -37.88 SS G_CDS: 3.83 Total: -34.06 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: 0.24 Total: -44.81 kcal Atomic # 8 Polarization: -46.43 SS G_CDS: -0.23 Total: -46.67 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 2.03 Total: 40.64 kcal Total: -66.85 6.96 -59.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816427901.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.836 kcal (2) G-P(sol) polarization free energy of solvation -66.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds