Wall clock time and date at job start Tue Mar 31 2020 06:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47224 * 2 1 4 4 H 1.08999 * 109.47034 * 305.17938 * 3 2 1 5 5 C 1.50698 * 109.47731 * 185.17776 * 3 2 1 6 6 H 1.08004 * 119.99859 * 244.94580 * 5 3 2 7 7 C 1.37872 * 120.00167 * 64.94299 * 5 3 2 8 8 N 1.31521 * 119.99933 * 7.03162 * 7 5 3 9 9 Si 1.86800 * 120.00066 * 187.03728 * 7 5 3 10 10 H 1.48493 * 109.47466 * 84.99228 * 9 7 5 11 11 H 1.48507 * 109.46835 * 204.99188 * 9 7 5 12 12 H 1.48497 * 109.46960 * 324.98940 * 9 7 5 13 13 O 1.45206 * 109.47271 * 65.17388 * 3 2 1 14 14 C 1.34740 * 116.99941 * 270.00707 * 13 3 2 15 15 O 1.21491 * 119.99908 * 359.97438 * 14 13 3 16 16 C 1.47532 * 119.99912 * 179.97438 * 14 13 3 17 17 N 1.31870 * 126.46661 * 359.69056 * 16 14 13 18 18 N 1.28468 * 110.12866 * 179.85605 * 17 16 14 19 19 C 1.46500 * 124.93273 * 180.16627 * 18 17 16 20 20 C 1.35652 * 110.13999 * 0.41280 * 18 17 16 21 21 C 1.50703 * 126.42988 * 179.73124 * 20 18 17 22 22 C 1.35444 * 107.14588 * 359.74869 * 20 18 17 23 23 Cl 1.73597 * 127.24303 * 179.97438 * 22 20 18 24 24 H 1.09006 * 109.47298 * 299.99641 * 1 2 3 25 25 H 1.09001 * 109.46412 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47012 * 60.00422 * 1 2 3 27 27 H 1.09000 * 109.47339 * 119.99620 * 2 1 3 28 28 H 1.08996 * 109.47345 * 240.00338 * 2 1 3 29 29 H 0.96998 * 119.99724 * 180.02562 * 8 7 5 30 30 H 1.09004 * 109.47140 * 270.28041 * 19 18 17 31 31 H 1.08995 * 109.47554 * 30.28217 * 19 18 17 32 32 H 1.09001 * 109.47307 * 150.28371 * 19 18 17 33 33 H 1.09000 * 109.46739 * 270.00048 * 21 20 18 34 34 H 1.08994 * 109.47117 * 29.99520 * 21 20 18 35 35 H 1.08998 * 109.47008 * 150.00028 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6029 1.9824 -0.8400 5 6 3.5415 1.4445 -0.1282 6 1 4.1521 1.8157 0.6816 7 6 4.1358 0.9726 -1.2793 8 7 3.3951 0.6503 -2.3172 9 14 5.9929 0.7907 -1.3647 10 1 6.3888 -0.5210 -0.7922 11 1 6.4330 0.8658 -2.7811 12 1 6.6334 1.8830 -0.5888 13 8 1.6594 2.0905 1.2425 14 6 0.4718 2.7265 1.2619 15 8 -0.2265 2.7398 0.2678 16 6 0.0193 3.4068 2.4903 17 7 0.6680 3.4677 3.6368 18 7 -0.0117 4.1412 4.4941 19 6 0.4082 4.4121 5.8712 20 6 -1.1771 4.5604 3.9407 21 6 -2.2497 5.3718 4.6206 22 6 -1.1960 4.1126 2.6626 23 17 -2.4476 4.3527 1.4837 24 1 -0.3634 0.5138 0.8901 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.8131 0.3179 -3.1269 30 1 0.0536 3.6136 6.5230 31 1 1.4961 4.4618 5.9163 32 1 -0.0127 5.3626 6.1991 33 1 -2.9669 4.7015 5.0944 34 1 -1.7963 6.0121 5.3772 35 1 -2.7618 5.9885 3.8820 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817730524.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:51 Heat of formation + Delta-G solvation = -20.142614 kcal Electronic energy + Delta-G solvation = -20645.710675 eV Core-core repulsion = 17285.756940 eV Total energy + Delta-G solvation = -3359.953735 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.74271 -39.23840 -36.45635 -35.62375 -33.75069 -33.26046 -32.62954 -31.35541 -27.94387 -27.37289 -26.86133 -23.81268 -22.75351 -21.07394 -20.27876 -19.17108 -17.27109 -16.69811 -16.65644 -16.31779 -15.35338 -15.05120 -14.84489 -14.38336 -13.74576 -13.58606 -13.25125 -12.95539 -12.86586 -12.77128 -12.54523 -11.99677 -11.77699 -11.46316 -11.36182 -11.20234 -11.12250 -10.91514 -10.59620 -10.48928 -10.20483 -9.78751 -9.62132 -9.30363 -9.17410 -8.74917 -8.70351 -8.39060 -6.12780 -4.16689 1.58549 1.83136 1.90277 2.66291 3.30374 3.35051 3.38324 3.63319 3.71105 4.29253 4.34750 4.41747 4.68902 4.79940 5.01045 5.10778 5.19995 5.20328 5.45505 5.55068 5.64755 6.10994 6.28136 6.35577 6.49042 6.56559 6.93497 7.02910 7.22390 7.26071 7.65347 7.76174 7.77029 7.95043 8.20670 8.71970 8.98619 9.47161 10.96147 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.022788 B = 0.004688 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.410768 B = 5971.134752 C = 6699.618138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 C 0.219 3.781 4 H 0.055 0.945 5 C -0.521 4.521 6 H 0.069 0.931 7 C 0.065 3.935 8 N -0.886 5.886 9 Si 0.908 3.092 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.272 1.272 13 O -0.339 6.339 14 C 0.537 3.463 15 O -0.491 6.491 16 C 0.027 3.973 17 N -0.219 5.219 18 N -0.282 5.282 19 C 0.088 3.912 20 C 0.017 3.983 21 C -0.082 4.082 22 C -0.103 4.103 23 Cl -0.009 7.009 24 H 0.034 0.966 25 H 0.033 0.967 26 H 0.056 0.944 27 H 0.044 0.956 28 H 0.093 0.907 29 H 0.266 0.734 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.527 8.624 16.189 21.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.073 0.927 5 C -0.559 4.559 6 H 0.087 0.913 7 C -0.138 4.138 8 N -0.524 5.524 9 Si 0.735 3.265 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.197 1.197 13 O -0.254 6.254 14 C 0.377 3.623 15 O -0.377 6.377 16 C -0.133 4.133 17 N -0.055 5.055 18 N -0.072 5.072 19 C -0.052 4.052 20 C -0.107 4.107 21 C -0.140 4.140 22 C -0.140 4.140 23 Cl 0.020 6.980 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.075 0.925 27 H 0.063 0.937 28 H 0.111 0.889 29 H 0.076 0.924 30 H 0.106 0.894 31 H 0.120 0.880 32 H 0.115 0.885 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.751 8.220 16.192 20.612 hybrid contribution 0.148 0.040 -0.633 0.651 sum -9.603 8.260 15.560 20.064 Atomic orbital electron populations 1.21865 0.98048 0.99105 1.01106 1.21925 0.92990 0.99338 1.02383 1.20742 0.95239 0.88637 0.78678 0.92722 1.20998 0.89560 1.43166 1.02164 0.91308 1.24878 0.99022 0.95169 0.94702 1.69979 1.35597 1.43495 1.03306 0.86349 0.84196 0.78793 0.77165 1.20292 1.21087 1.19706 1.86618 1.32886 1.62010 1.43917 1.19313 0.81430 0.76741 0.84775 1.90843 1.55361 1.58083 1.33427 1.21109 0.93799 1.05264 0.93108 1.73927 1.21051 1.11939 0.98594 1.45418 1.12790 1.37301 1.11697 1.22211 1.03831 1.03105 0.76049 1.21056 0.91741 1.04805 0.93125 1.20374 0.94639 0.98365 1.00649 1.20488 0.94118 1.07641 0.91744 1.98349 1.48688 1.95613 1.55364 0.94714 0.94787 0.92518 0.93713 0.88908 0.92450 0.89395 0.87968 0.88537 0.89911 0.90719 0.89315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 8.57 37.16 0.32 -2.96 16 2 C -0.13 -3.27 5.53 -26.73 -0.15 -3.42 16 3 C 0.22 6.06 2.12 -27.88 -0.06 6.01 16 4 H 0.06 1.66 7.13 -51.93 -0.37 1.29 16 5 C -0.52 -15.06 8.83 -34.44 -0.30 -15.36 16 6 H 0.07 1.98 7.82 -52.48 -0.41 1.57 16 7 C 0.06 1.82 5.20 -17.82 -0.09 1.73 16 8 N -0.89 -25.69 12.01 55.43 0.67 -25.03 16 9 Si 0.91 21.53 29.54 -169.99 -5.02 16.51 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 13 O -0.34 -8.76 9.82 -40.60 -0.40 -9.15 16 14 C 0.54 12.57 6.42 34.52 0.22 12.79 16 15 O -0.49 -12.04 13.06 -19.26 -0.25 -12.29 16 16 C 0.03 0.53 7.16 -82.78 -0.59 -0.07 16 17 N -0.22 -3.87 11.98 33.41 0.40 -3.47 16 18 N -0.28 -3.57 3.72 -63.68 -0.24 -3.81 16 19 C 0.09 0.57 11.12 59.85 0.67 1.24 16 20 C 0.02 0.21 6.94 -81.90 -0.57 -0.36 16 21 C -0.08 -0.58 9.99 36.01 0.36 -0.22 16 22 C -0.10 -1.68 6.79 -39.30 -0.27 -1.94 16 23 Cl -0.01 -0.14 27.92 -51.86 -1.45 -1.58 16 24 H 0.03 0.78 6.05 -51.93 -0.31 0.46 16 25 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 1.34 7.80 -51.93 -0.41 0.93 16 27 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.09 2.51 6.65 -51.93 -0.35 2.17 16 29 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.10 0.32 6.98 -51.93 -0.36 -0.05 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.33 7.02 -51.93 -0.36 -0.04 16 35 H 0.09 0.62 8.03 -51.93 -0.42 0.20 16 LS Contribution 314.55 15.07 4.74 4.74 Total: -1.00 -33.98 314.55 -6.26 -40.24 By element: Atomic # 1 Polarization: 0.63 SS G_CDS: -4.24 Total: -3.61 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -0.47 Total: -2.55 kcal Atomic # 7 Polarization: -33.13 SS G_CDS: 0.83 Total: -32.31 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.65 Total: -21.44 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -1.45 Total: -1.58 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.98 -6.26 -40.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817730524.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.097 kcal (2) G-P(sol) polarization free energy of solvation -33.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds