Wall clock time and date at job start Tue Mar 31 2020 06:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47224 * 2 1 4 4 H 1.08999 * 109.47034 * 305.17938 * 3 2 1 5 5 C 1.50698 * 109.47731 * 185.17776 * 3 2 1 6 6 H 1.08004 * 119.99859 * 244.94580 * 5 3 2 7 7 C 1.37872 * 120.00167 * 64.94299 * 5 3 2 8 8 N 1.31521 * 119.99933 * 7.03162 * 7 5 3 9 9 Si 1.86800 * 120.00066 * 187.03728 * 7 5 3 10 10 H 1.48493 * 109.47466 * 84.99228 * 9 7 5 11 11 H 1.48507 * 109.46835 * 204.99188 * 9 7 5 12 12 H 1.48497 * 109.46960 * 324.98940 * 9 7 5 13 13 O 1.45206 * 109.47271 * 65.17388 * 3 2 1 14 14 C 1.34740 * 116.99941 * 270.00707 * 13 3 2 15 15 O 1.21491 * 119.99908 * 359.97438 * 14 13 3 16 16 C 1.47532 * 119.99912 * 179.97438 * 14 13 3 17 17 N 1.31870 * 126.46661 * 359.69056 * 16 14 13 18 18 N 1.28468 * 110.12866 * 179.85605 * 17 16 14 19 19 C 1.46500 * 124.93273 * 180.16627 * 18 17 16 20 20 C 1.35652 * 110.13999 * 0.41280 * 18 17 16 21 21 C 1.50703 * 126.42988 * 179.73124 * 20 18 17 22 22 C 1.35444 * 107.14588 * 359.74869 * 20 18 17 23 23 Cl 1.73597 * 127.24303 * 179.97438 * 22 20 18 24 24 H 1.09006 * 109.47298 * 299.99641 * 1 2 3 25 25 H 1.09001 * 109.46412 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47012 * 60.00422 * 1 2 3 27 27 H 1.09000 * 109.47339 * 119.99620 * 2 1 3 28 28 H 1.08996 * 109.47345 * 240.00338 * 2 1 3 29 29 H 0.96998 * 119.99724 * 180.02562 * 8 7 5 30 30 H 1.09004 * 109.47140 * 270.28041 * 19 18 17 31 31 H 1.08995 * 109.47554 * 30.28217 * 19 18 17 32 32 H 1.09001 * 109.47307 * 150.28371 * 19 18 17 33 33 H 1.09000 * 109.46739 * 270.00048 * 21 20 18 34 34 H 1.08994 * 109.47117 * 29.99520 * 21 20 18 35 35 H 1.08998 * 109.47008 * 150.00028 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6029 1.9824 -0.8400 5 6 3.5415 1.4445 -0.1282 6 1 4.1521 1.8157 0.6816 7 6 4.1358 0.9726 -1.2793 8 7 3.3951 0.6503 -2.3172 9 14 5.9929 0.7907 -1.3647 10 1 6.3888 -0.5210 -0.7922 11 1 6.4330 0.8658 -2.7811 12 1 6.6334 1.8830 -0.5888 13 8 1.6594 2.0905 1.2425 14 6 0.4718 2.7265 1.2619 15 8 -0.2265 2.7398 0.2678 16 6 0.0193 3.4068 2.4903 17 7 0.6680 3.4677 3.6368 18 7 -0.0117 4.1412 4.4941 19 6 0.4082 4.4121 5.8712 20 6 -1.1771 4.5604 3.9407 21 6 -2.2497 5.3718 4.6206 22 6 -1.1960 4.1126 2.6626 23 17 -2.4476 4.3527 1.4837 24 1 -0.3634 0.5138 0.8901 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.8131 0.3179 -3.1269 30 1 0.0536 3.6136 6.5230 31 1 1.4961 4.4618 5.9163 32 1 -0.0127 5.3626 6.1991 33 1 -2.9669 4.7015 5.0944 34 1 -1.7963 6.0121 5.3772 35 1 -2.7618 5.9885 3.8820 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817730524.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:50 Heat of formation + Delta-G solvation = -42.098924 kcal Electronic energy + Delta-G solvation = -20646.662772 eV Core-core repulsion = 17285.756940 eV Total energy + Delta-G solvation = -3360.905832 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.88474 -41.12706 -37.75913 -37.45347 -35.48790 -34.65163 -33.54838 -33.41404 -29.54755 -28.62004 -28.00477 -25.52294 -24.48742 -22.40282 -21.96093 -20.88328 -18.89577 -18.23286 -18.11804 -17.73976 -17.13895 -16.81598 -16.34103 -15.82597 -14.94301 -14.85744 -14.57328 -14.23719 -14.05942 -13.75047 -13.48929 -13.44526 -13.29930 -13.12571 -13.08677 -12.85383 -12.82029 -12.54825 -12.48574 -12.14559 -11.89154 -11.77293 -11.44811 -11.33314 -10.84154 -10.55700 -10.29751 -9.83256 -8.29160 -6.43522 0.19356 0.71089 0.86678 1.40223 1.43877 1.50823 1.56788 2.02387 2.05903 2.41765 3.01659 3.30467 3.49285 3.84412 4.09580 4.29069 4.34537 4.35823 4.37262 4.49290 4.64885 4.69647 4.76581 4.83376 4.86243 5.05037 5.08315 5.19263 5.30710 5.50202 5.59899 5.65762 5.85041 6.07358 6.52624 6.63886 6.98207 7.26817 8.80252 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.022788 B = 0.004688 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.410768 B = 5971.134752 C = 6699.618138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.120 4.120 3 C 0.223 3.777 4 H 0.014 0.986 5 C -0.552 4.552 6 H 0.062 0.938 7 C 0.021 3.979 8 N -0.914 5.914 9 Si 0.980 3.020 10 H -0.265 1.265 11 H -0.276 1.276 12 H -0.268 1.268 13 O -0.353 6.353 14 C 0.531 3.469 15 O -0.514 6.514 16 C -0.017 4.017 17 N -0.245 5.245 18 N -0.265 5.265 19 C 0.070 3.930 20 C 0.048 3.952 21 C -0.083 4.083 22 C -0.130 4.130 23 Cl -0.013 7.013 24 H 0.032 0.968 25 H 0.065 0.935 26 H 0.039 0.961 27 H 0.049 0.951 28 H 0.074 0.926 29 H 0.271 0.729 30 H 0.111 0.889 31 H 0.103 0.897 32 H 0.140 0.860 33 H 0.105 0.895 34 H 0.113 0.887 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.762 9.496 18.999 23.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.158 4.158 3 C 0.170 3.830 4 H 0.032 0.968 5 C -0.590 4.590 6 H 0.080 0.920 7 C -0.179 4.179 8 N -0.551 5.551 9 Si 0.803 3.197 10 H -0.190 1.190 11 H -0.201 1.201 12 H -0.192 1.192 13 O -0.269 6.269 14 C 0.374 3.626 15 O -0.401 6.401 16 C -0.174 4.174 17 N -0.083 5.083 18 N -0.056 5.056 19 C -0.067 4.067 20 C -0.078 4.078 21 C -0.140 4.140 22 C -0.167 4.167 23 Cl 0.016 6.984 24 H 0.051 0.949 25 H 0.084 0.916 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.130 0.870 31 H 0.121 0.879 32 H 0.158 0.842 33 H 0.123 0.877 34 H 0.131 0.869 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.999 9.097 19.024 23.338 hybrid contribution 0.149 -0.127 -1.354 1.368 sum -9.850 8.970 17.670 22.129 Atomic orbital electron populations 1.21706 0.96027 1.00810 1.00165 1.21767 0.94733 0.97795 1.01547 1.20480 0.94823 0.89330 0.78331 0.96784 1.21252 0.90300 1.44635 1.02776 0.92001 1.25797 1.04222 0.94066 0.93826 1.70093 1.37827 1.43401 1.03814 0.85248 0.77660 0.79219 0.77599 1.18971 1.20088 1.19215 1.86596 1.34691 1.62798 1.42782 1.19945 0.80257 0.76170 0.86234 1.90801 1.55579 1.58964 1.34788 1.20718 0.96071 1.07937 0.92640 1.73820 1.22186 1.13422 0.98858 1.46078 1.12178 1.34673 1.12663 1.22863 1.04596 1.06272 0.72963 1.21808 0.91931 1.02546 0.91539 1.20683 0.93447 0.98560 1.01343 1.20712 0.93476 1.08967 0.93514 1.98334 1.48467 1.95644 1.55976 0.94932 0.91589 0.94136 0.93208 0.90755 0.91965 0.87029 0.87852 0.84153 0.87681 0.86857 0.89042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.07 8.57 71.98 0.62 -5.45 16 2 C -0.12 -6.36 5.53 30.59 0.17 -6.19 16 3 C 0.22 13.02 2.12 29.85 0.06 13.08 16 4 H 0.01 0.93 7.13 -2.39 -0.02 0.91 16 5 C -0.55 -33.13 8.83 25.60 0.23 -32.90 16 6 H 0.06 3.69 7.82 -2.91 -0.02 3.67 16 7 C 0.02 1.21 5.20 84.65 0.44 1.65 16 8 N -0.91 -54.35 12.01 21.45 0.26 -54.09 16 9 Si 0.98 44.44 29.54 68.60 2.03 46.47 16 10 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 11 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 12 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 13 O -0.35 -19.24 9.82 -56.51 -0.55 -19.79 16 14 C 0.53 26.24 6.42 70.27 0.45 26.69 16 15 O -0.51 -26.75 13.06 19.87 0.26 -26.49 16 16 C -0.02 -0.68 7.16 42.42 0.30 -0.38 16 17 N -0.24 -8.58 11.98 -48.22 -0.58 -9.16 16 18 N -0.27 -6.05 3.72 -355.39 -1.32 -7.37 16 19 C 0.07 0.62 11.12 127.77 1.42 2.04 16 20 C 0.05 1.04 6.94 41.32 0.29 1.33 16 21 C -0.08 -0.78 9.99 71.24 0.71 -0.07 16 22 C -0.13 -4.17 6.79 22.45 0.15 -4.02 16 23 Cl -0.01 -0.40 27.92 -2.72 -0.08 -0.47 16 24 H 0.03 1.50 6.05 -2.38 -0.01 1.49 16 25 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 26 H 0.04 1.99 7.80 -2.39 -0.02 1.97 16 27 H 0.05 2.52 8.14 -2.39 -0.02 2.50 16 28 H 0.07 4.18 6.65 -2.39 -0.02 4.16 16 29 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 30 H 0.11 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.14 0.06 6.98 -2.39 -0.02 0.04 16 33 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.11 0.25 7.02 -2.39 -0.02 0.24 16 35 H 0.09 0.91 8.03 -2.39 -0.02 0.89 16 Total: -1.00 -79.42 314.55 5.97 -73.45 By element: Atomic # 1 Polarization: 0.55 SS G_CDS: 1.11 Total: 1.66 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: 4.84 Total: -4.21 kcal Atomic # 7 Polarization: -68.98 SS G_CDS: -1.64 Total: -70.62 kcal Atomic # 8 Polarization: -45.98 SS G_CDS: -0.30 Total: -46.28 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -0.08 Total: -0.47 kcal Total: -79.42 5.97 -73.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817730524.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.354 kcal (2) G-P(sol) polarization free energy of solvation -79.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds