Wall clock time and date at job start Tue Mar 31 2020 06:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47052 * 2 1 4 4 C 1.53003 * 109.47062 * 239.99949 * 2 1 3 5 5 C 1.50700 * 109.46808 * 59.99929 * 4 2 1 6 6 H 1.07996 * 120.00289 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00080 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00485 * 180.02562 * 7 5 4 9 9 Si 1.86808 * 119.99592 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.46875 * 89.99986 * 9 7 5 11 11 H 1.48497 * 109.46872 * 210.00051 * 9 7 5 12 12 H 1.48494 * 109.47249 * 329.99828 * 9 7 5 13 13 C 1.53001 * 109.46836 * 120.00087 * 2 1 3 14 14 N 1.46493 * 109.47084 * 299.99612 * 13 2 1 15 15 C 1.34784 * 119.99864 * 180.02562 * 14 13 2 16 16 O 1.21583 * 119.99453 * 359.72930 * 15 14 13 17 17 C 1.47520 * 119.99967 * 179.72956 * 15 14 13 18 18 C 1.36787 * 126.92312 * 180.02562 * 17 15 14 19 19 C 1.41415 * 103.83008 * 179.97438 * 18 17 15 20 20 Cl 1.73597 * 126.71945 * 179.97438 * 19 18 17 21 21 N 1.30219 * 106.55231 * 359.97438 * 19 18 17 22 22 O 1.20885 * 111.96156 * 359.72391 * 21 19 18 23 23 H 1.09003 * 109.47126 * 300.00066 * 1 2 3 24 24 H 1.08996 * 109.47277 * 60.00047 * 1 2 3 25 25 H 1.09001 * 109.47339 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46763 * 180.02562 * 3 2 1 27 27 H 1.08996 * 109.47041 * 300.00098 * 3 2 1 28 28 H 1.08994 * 109.47083 * 60.00222 * 3 2 1 29 29 H 1.08993 * 109.47057 * 179.97438 * 4 2 1 30 30 H 1.09001 * 109.47095 * 300.00213 * 4 2 1 31 31 H 0.96993 * 120.00178 * 180.02562 * 8 7 5 32 32 H 1.09007 * 109.46593 * 179.97438 * 13 2 1 33 33 H 1.09006 * 109.47216 * 60.00328 * 13 2 1 34 34 H 0.97000 * 120.00740 * 359.72857 * 14 13 2 35 35 H 1.07993 * 128.08765 * 359.96782 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8711 -0.4815 -3.7320 8 7 1.4331 0.1387 -4.8058 9 14 2.9450 -2.0004 -3.9034 10 1 2.0864 -3.2111 -3.9494 11 1 3.7374 -1.9075 -5.1559 12 1 3.8650 -2.0898 -2.7412 13 6 2.0399 -0.7213 1.2493 14 7 1.5517 -0.0307 2.4454 15 6 1.8777 -0.4909 3.6695 16 8 2.5729 -1.4821 3.7810 17 6 1.3909 0.2080 4.8740 18 6 1.6339 -0.1326 6.1763 19 6 0.9444 0.8543 6.9182 20 17 0.8594 0.9824 8.6474 21 7 0.3858 1.6482 6.0501 22 8 0.6236 1.3137 4.9131 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 3.1299 -0.7209 -1.2495 30 1 1.6766 -1.7489 -1.2493 31 1 1.6674 -0.1927 -5.6867 32 1 3.1300 -0.7217 1.2490 33 1 1.6766 -1.7490 1.2492 34 1 0.9973 0.7603 2.3565 35 1 2.2161 -0.9616 6.5505 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822949801.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:16 Heat of formation + Delta-G solvation = 10.420507 kcal Electronic energy + Delta-G solvation = -20032.261795 eV Core-core repulsion = 16673.633376 eV Total energy + Delta-G solvation = -3358.628419 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -45.57798 -39.92064 -37.57834 -37.41779 -34.33343 -33.83138 -32.55988 -31.99833 -27.96700 -26.81948 -26.62434 -24.25434 -24.03662 -22.39016 -21.01610 -19.48833 -18.36022 -17.95322 -16.94652 -16.60679 -16.06985 -15.45023 -15.37337 -14.35439 -14.21511 -13.88178 -13.84671 -13.59063 -13.18706 -12.83621 -12.81147 -12.48444 -12.31863 -11.53390 -11.32480 -11.19874 -11.05923 -10.67589 -10.61892 -10.58326 -10.51179 -10.23280 -10.05032 -9.79827 -9.60299 -9.13836 -9.05320 -8.57109 -6.07483 -4.05318 0.33982 0.98149 1.36503 2.18585 2.73711 3.01997 3.28799 3.37311 3.39987 3.81286 4.25715 4.42247 4.52827 4.63140 5.20488 5.24127 5.25327 5.41052 5.54102 5.96415 6.00310 6.04371 6.20072 6.22658 6.53305 6.53739 6.80525 6.96433 6.99175 7.11638 7.16473 7.29652 7.46779 7.73868 7.82820 8.48781 8.96489 9.54782 11.05184 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.046483 B = 0.002998 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.230817 B = 9336.135070 C = 9741.986928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.063 4.063 3 C -0.131 4.131 4 C -0.002 4.002 5 C -0.512 4.512 6 H 0.079 0.921 7 C 0.067 3.933 8 N -0.903 5.903 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.123 3.877 14 N -0.699 5.699 15 C 0.598 3.402 16 O -0.511 6.511 17 C -0.061 4.061 18 C -0.141 4.141 19 C 0.051 3.949 20 Cl 0.032 6.968 21 N -0.327 5.327 22 O 0.138 5.862 23 H 0.032 0.968 24 H 0.075 0.925 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.075 0.925 28 H 0.032 0.968 29 H 0.019 0.981 30 H 0.015 0.985 31 H 0.263 0.737 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.408 0.592 35 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.643 1.008 22.489 22.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.064 4.064 3 C -0.189 4.189 4 C -0.040 4.040 5 C -0.550 4.550 6 H 0.097 0.903 7 C -0.134 4.134 8 N -0.542 5.542 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.000 4.000 14 N -0.350 5.350 15 C 0.380 3.620 16 O -0.387 6.387 17 C -0.127 4.127 18 C -0.165 4.165 19 C -0.132 4.132 20 Cl 0.059 6.941 21 N -0.027 5.027 22 O 0.061 5.939 23 H 0.051 0.949 24 H 0.094 0.906 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.094 0.906 28 H 0.051 0.949 29 H 0.038 0.962 30 H 0.033 0.967 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.245 0.755 35 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -0.902 1.379 22.631 22.691 hybrid contribution 0.711 -1.044 0.146 1.271 sum -0.191 0.336 22.777 22.780 Atomic orbital electron populations 1.21808 0.94582 1.01436 1.01060 1.20722 0.96017 0.96026 0.93623 1.21803 1.00567 0.95442 1.01059 1.19596 0.96355 0.95523 0.92480 1.21062 1.31974 1.13425 0.88566 0.90334 1.25001 0.95682 0.96743 0.95985 1.69894 1.45840 1.40528 0.97918 0.86861 0.81312 0.83904 0.77696 1.20366 1.21511 1.18973 1.21864 0.99407 0.96305 0.82387 1.46134 1.51999 1.31659 1.05220 1.16469 0.80923 0.83574 0.81080 1.90898 1.37720 1.24695 1.85400 1.24424 0.99566 0.91242 0.97484 1.22738 1.02314 1.01398 0.90005 1.24068 1.02280 0.96501 0.90383 1.98427 1.97298 1.97640 1.00686 1.73874 1.18469 1.20788 0.89613 1.85077 1.51470 1.35286 1.22105 0.94873 0.90649 0.93245 0.93239 0.90640 0.94874 0.96250 0.96694 0.92747 0.90954 0.90937 0.75511 0.78845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 8.05 37.16 0.30 -1.81 16 2 C -0.06 -1.06 0.54 -154.51 -0.08 -1.15 16 3 C -0.13 -2.11 8.05 37.16 0.30 -1.81 16 4 C 0.00 -0.04 3.11 -27.88 -0.09 -0.12 16 5 C -0.51 -13.20 8.20 -34.44 -0.28 -13.49 16 6 H 0.08 2.15 5.92 -52.49 -0.31 1.84 16 7 C 0.07 1.85 5.47 -17.82 -0.10 1.75 16 8 N -0.90 -26.65 13.96 55.43 0.77 -25.88 16 9 Si 0.87 20.86 27.47 -169.99 -4.67 16.19 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 13 C 0.12 1.80 4.56 -4.04 -0.02 1.78 16 14 N -0.70 -8.60 4.96 -61.35 -0.30 -8.90 16 15 C 0.60 7.57 7.82 -12.47 -0.10 7.47 16 16 O -0.51 -7.94 16.91 5.29 0.09 -7.85 16 17 C -0.06 -0.66 7.29 -36.32 -0.26 -0.92 16 18 C -0.14 -1.36 10.96 -38.90 -0.43 -1.78 16 19 C 0.05 0.51 7.97 -17.03 -0.14 0.37 16 20 Cl 0.03 0.26 29.33 -51.86 -1.52 -1.26 16 21 N -0.33 -3.72 12.05 32.82 0.40 -3.32 16 22 O 0.14 1.48 11.04 15.56 0.17 1.65 16 23 H 0.03 0.43 6.87 -51.93 -0.36 0.07 16 24 H 0.07 1.39 6.62 -51.93 -0.34 1.04 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.07 1.39 6.62 -51.93 -0.34 1.04 16 28 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 29 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 30 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.41 4.35 5.99 -40.82 -0.24 4.11 16 35 H 0.19 1.48 8.06 -52.49 -0.42 1.05 16 LS Contribution 311.06 15.07 4.69 4.69 Total: -1.00 -29.23 311.06 -5.27 -34.50 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -4.00 Total: -0.12 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: -0.89 Total: -9.70 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.86 Total: -38.10 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: 0.26 Total: -6.20 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.67 Total: 16.19 kcal Atomic # 17 Polarization: 0.26 SS G_CDS: -1.52 Total: -1.26 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.23 -5.27 -34.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822949801.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.921 kcal (2) G-P(sol) polarization free energy of solvation -29.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds