Wall clock time and date at job start Tue Mar 31 2020 06:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47052 * 2 1 4 4 C 1.53003 * 109.47062 * 239.99949 * 2 1 3 5 5 C 1.50700 * 109.46808 * 59.99929 * 4 2 1 6 6 H 1.07996 * 120.00289 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00080 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00485 * 180.02562 * 7 5 4 9 9 Si 1.86808 * 119.99592 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.46875 * 89.99986 * 9 7 5 11 11 H 1.48497 * 109.46872 * 210.00051 * 9 7 5 12 12 H 1.48494 * 109.47249 * 329.99828 * 9 7 5 13 13 C 1.53001 * 109.46836 * 120.00087 * 2 1 3 14 14 N 1.46493 * 109.47084 * 299.99612 * 13 2 1 15 15 C 1.34784 * 119.99864 * 180.02562 * 14 13 2 16 16 O 1.21583 * 119.99453 * 359.72930 * 15 14 13 17 17 C 1.47520 * 119.99967 * 179.72956 * 15 14 13 18 18 C 1.36787 * 126.92312 * 180.02562 * 17 15 14 19 19 C 1.41415 * 103.83008 * 179.97438 * 18 17 15 20 20 Cl 1.73597 * 126.71945 * 179.97438 * 19 18 17 21 21 N 1.30219 * 106.55231 * 359.97438 * 19 18 17 22 22 O 1.20885 * 111.96156 * 359.72391 * 21 19 18 23 23 H 1.09003 * 109.47126 * 300.00066 * 1 2 3 24 24 H 1.08996 * 109.47277 * 60.00047 * 1 2 3 25 25 H 1.09001 * 109.47339 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46763 * 180.02562 * 3 2 1 27 27 H 1.08996 * 109.47041 * 300.00098 * 3 2 1 28 28 H 1.08994 * 109.47083 * 60.00222 * 3 2 1 29 29 H 1.08993 * 109.47057 * 179.97438 * 4 2 1 30 30 H 1.09001 * 109.47095 * 300.00213 * 4 2 1 31 31 H 0.96993 * 120.00178 * 180.02562 * 8 7 5 32 32 H 1.09007 * 109.46593 * 179.97438 * 13 2 1 33 33 H 1.09006 * 109.47216 * 60.00328 * 13 2 1 34 34 H 0.97000 * 120.00740 * 359.72857 * 14 13 2 35 35 H 1.07993 * 128.08765 * 359.96782 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8711 -0.4815 -3.7320 8 7 1.4331 0.1387 -4.8058 9 14 2.9450 -2.0004 -3.9034 10 1 2.0864 -3.2111 -3.9494 11 1 3.7374 -1.9075 -5.1559 12 1 3.8650 -2.0898 -2.7412 13 6 2.0399 -0.7213 1.2493 14 7 1.5517 -0.0307 2.4454 15 6 1.8777 -0.4909 3.6695 16 8 2.5729 -1.4821 3.7810 17 6 1.3909 0.2080 4.8740 18 6 1.6339 -0.1326 6.1763 19 6 0.9444 0.8543 6.9182 20 17 0.8594 0.9824 8.6474 21 7 0.3858 1.6482 6.0501 22 8 0.6236 1.3137 4.9131 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 3.1299 -0.7209 -1.2495 30 1 1.6766 -1.7489 -1.2493 31 1 1.6674 -0.1927 -5.6867 32 1 3.1300 -0.7217 1.2490 33 1 1.6766 -1.7490 1.2492 34 1 0.9973 0.7603 2.3565 35 1 2.2161 -0.9616 6.5505 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822949801.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:16 Heat of formation + Delta-G solvation = -8.314931 kcal Electronic energy + Delta-G solvation = -20033.074224 eV Core-core repulsion = 16673.633376 eV Total energy + Delta-G solvation = -3359.440848 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -46.38643 -41.00087 -38.76041 -38.27200 -35.44744 -34.86635 -34.12490 -33.16516 -29.75050 -27.99402 -27.95184 -25.43689 -24.83686 -23.94572 -22.00529 -20.54045 -19.28893 -19.18226 -18.85267 -17.49467 -17.18426 -16.46482 -16.37031 -16.13585 -15.29724 -15.19930 -15.03521 -14.88161 -14.20298 -14.13833 -13.93018 -13.85480 -13.61252 -12.91175 -12.81146 -12.59405 -12.26286 -12.25391 -12.13700 -11.78635 -11.63961 -11.48177 -11.25432 -11.13757 -11.06969 -10.88408 -10.67165 -10.21410 -8.18924 -6.19193 -0.49978 0.25490 0.58861 1.30448 1.39730 1.42579 1.52006 1.78293 2.07735 2.42468 3.00123 3.17050 3.49088 3.70161 3.77744 3.92742 4.08590 4.18453 4.54529 4.65097 4.73805 4.78819 4.98327 5.00974 5.14126 5.22081 5.35666 5.43501 5.46433 5.59972 5.72811 5.80068 6.19211 6.41690 6.64065 6.85305 6.88837 7.43665 8.96799 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.046483 B = 0.002998 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.230817 B = 9336.135070 C = 9741.986928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.059 4.059 3 C -0.128 4.128 4 C -0.004 4.004 5 C -0.501 4.501 6 H 0.051 0.949 7 C 0.003 3.997 8 N -0.954 5.954 9 Si 0.935 3.065 10 H -0.272 1.272 11 H -0.293 1.293 12 H -0.246 1.246 13 C 0.135 3.865 14 N -0.692 5.692 15 C 0.607 3.393 16 O -0.540 6.540 17 C -0.068 4.068 18 C -0.128 4.128 19 C 0.047 3.953 20 Cl 0.046 6.954 21 N -0.343 5.343 22 O 0.140 5.860 23 H 0.067 0.933 24 H 0.043 0.957 25 H 0.049 0.951 26 H 0.048 0.952 27 H 0.044 0.956 28 H 0.067 0.933 29 H 0.019 0.981 30 H 0.018 0.982 31 H 0.261 0.739 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.417 0.583 35 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.117 0.261 25.061 25.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.059 4.059 3 C -0.185 4.185 4 C -0.042 4.042 5 C -0.539 4.539 6 H 0.069 0.931 7 C -0.193 4.193 8 N -0.596 5.596 9 Si 0.760 3.240 10 H -0.198 1.198 11 H -0.219 1.219 12 H -0.170 1.170 13 C 0.012 3.988 14 N -0.344 5.344 15 C 0.390 3.610 16 O -0.418 6.418 17 C -0.134 4.134 18 C -0.150 4.150 19 C -0.135 4.135 20 Cl 0.074 6.926 21 N -0.043 5.043 22 O 0.063 5.937 23 H 0.086 0.914 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.038 0.962 30 H 0.036 0.964 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.256 0.744 35 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -0.388 0.648 25.237 25.248 hybrid contribution 0.486 -0.725 -0.559 1.037 sum 0.098 -0.078 24.678 24.679 Atomic orbital electron populations 1.21747 0.94015 1.01509 1.01251 1.20570 0.96436 0.96115 0.92795 1.21744 1.00536 0.94976 1.01259 1.19578 0.96223 0.95616 0.92790 1.21397 1.30119 1.12232 0.90187 0.93131 1.25866 0.97533 0.99998 0.95900 1.70047 1.48299 1.42784 0.98462 0.85881 0.79858 0.80255 0.77981 1.19765 1.21910 1.16975 1.21531 0.99248 0.96006 0.82046 1.45938 1.52032 1.31791 1.04595 1.16465 0.80166 0.83043 0.81288 1.90890 1.39018 1.25998 1.85865 1.24061 1.00545 0.91748 0.97072 1.23014 1.01335 1.01279 0.89410 1.24240 1.01899 0.96258 0.91121 1.98437 1.97205 1.97576 0.99359 1.73859 1.19050 1.21390 0.89992 1.85067 1.51494 1.35216 1.21968 0.91391 0.93748 0.93225 0.93246 0.93733 0.91382 0.96244 0.96400 0.92969 0.91054 0.90982 0.74417 0.76956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.94 8.05 71.98 0.58 -3.36 16 2 C -0.06 -1.89 0.54 -52.18 -0.03 -1.92 16 3 C -0.13 -3.94 8.05 71.98 0.58 -3.36 16 4 C 0.00 -0.18 3.11 29.85 0.09 -0.08 16 5 C -0.50 -26.27 8.20 25.60 0.21 -26.06 16 6 H 0.05 2.88 5.92 -2.91 -0.02 2.86 16 7 C 0.00 0.16 5.47 84.66 0.46 0.63 16 8 N -0.95 -58.11 13.96 21.45 0.30 -57.81 16 9 Si 0.94 43.00 27.47 68.60 1.88 44.89 16 10 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 12 H -0.25 -10.46 6.54 99.48 0.65 -9.81 16 13 C 0.13 3.63 4.56 86.38 0.39 4.03 16 14 N -0.69 -15.09 4.96 -466.28 -2.31 -17.40 16 15 C 0.61 13.82 7.82 86.69 0.68 14.50 16 16 O -0.54 -15.53 16.91 -3.98 -0.07 -15.60 16 17 C -0.07 -1.30 7.29 24.38 0.18 -1.12 16 18 C -0.13 -2.10 10.96 22.71 0.25 -1.85 16 19 C 0.05 0.84 7.97 85.71 0.68 1.52 16 20 Cl 0.05 0.67 29.33 -2.72 -0.08 0.59 16 21 N -0.34 -7.03 12.05 -51.03 -0.61 -7.64 16 22 O 0.14 2.68 11.04 65.84 0.73 3.41 16 23 H 0.07 1.59 6.87 -2.39 -0.02 1.58 16 24 H 0.04 1.64 6.62 -2.39 -0.02 1.62 16 25 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.04 1.65 6.62 -2.39 -0.02 1.63 16 28 H 0.07 1.59 6.86 -2.39 -0.02 1.58 16 29 H 0.02 0.82 7.20 -2.39 -0.02 0.80 16 30 H 0.02 0.74 7.57 -2.39 -0.02 0.72 16 31 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 32 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 34 H 0.42 7.55 5.99 -92.71 -0.56 6.99 16 35 H 0.21 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -63.63 311.06 4.44 -59.20 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: 0.52 Total: 7.44 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: 4.08 Total: -17.07 kcal Atomic # 7 Polarization: -80.23 SS G_CDS: -2.63 Total: -82.85 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.66 Total: -12.19 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 1.88 Total: 44.89 kcal Atomic # 17 Polarization: 0.67 SS G_CDS: -0.08 Total: 0.59 kcal Total: -63.63 4.44 -59.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822949801.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.882 kcal (2) G-P(sol) polarization free energy of solvation -63.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds