Wall clock time and date at job start Tue Mar 31 2020 06:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28474 * 124.93233 * 2 1 4 4 C 1.31824 * 110.14158 * 179.97438 * 3 2 1 5 5 C 1.47586 * 126.45862 * 179.97438 * 4 3 2 6 6 O 1.21494 * 119.99940 * 180.02562 * 5 4 3 7 7 O 1.34732 * 120.00087 * 0.02639 * 5 4 3 8 8 C 1.45200 * 116.99605 * 180.02562 * 7 5 4 9 9 C 1.53004 * 109.46808 * 180.02562 * 8 7 5 10 10 C 1.52994 * 109.47032 * 299.99931 * 9 8 7 11 11 C 1.53004 * 109.47245 * 59.99885 * 9 8 7 12 12 C 1.50702 * 109.47213 * 179.97438 * 9 8 7 13 13 H 1.07998 * 120.00029 * 0.02562 * 12 9 8 14 14 C 1.37874 * 119.99905 * 179.97438 * 12 9 8 15 15 N 1.31517 * 120.00218 * 0.02562 * 14 12 9 16 16 Si 1.86806 * 119.99908 * 180.02562 * 14 12 9 17 17 H 1.48497 * 109.46863 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47338 * 120.00065 * 16 14 12 19 19 H 1.48500 * 109.46840 * 240.00151 * 16 14 12 20 20 C 1.41523 * 107.07925 * 0.02562 * 4 3 2 21 21 C 1.35505 * 105.51775 * 359.97438 * 20 4 3 22 22 Cl 1.73600 * 126.43655 * 180.02562 * 21 20 4 23 23 H 1.09000 * 109.47340 * 90.02353 * 1 2 3 24 24 H 1.09005 * 109.46992 * 210.02844 * 1 2 3 25 25 H 1.09002 * 109.47446 * 330.02186 * 1 2 3 26 26 H 1.09006 * 109.47424 * 299.99500 * 8 7 5 27 27 H 1.08998 * 109.47557 * 60.00180 * 8 7 5 28 28 H 1.09001 * 109.47452 * 60.00427 * 10 9 8 29 29 H 1.09010 * 109.46983 * 180.02562 * 10 9 8 30 30 H 1.08998 * 109.47074 * 299.99758 * 10 9 8 31 31 H 1.09004 * 109.47428 * 59.99870 * 11 9 8 32 32 H 1.08996 * 109.47264 * 179.97438 * 11 9 8 33 33 H 1.08998 * 109.47037 * 300.00059 * 11 9 8 34 34 H 0.97001 * 119.99414 * 179.97438 * 15 14 12 35 35 H 1.08004 * 127.24634 * 180.02562 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2006 1.0533 0.0000 4 6 3.4752 0.7167 0.0006 5 6 4.6262 1.6405 0.0002 6 8 5.7585 1.2002 0.0003 7 8 4.4212 2.9722 -0.0002 8 6 5.5997 3.8204 -0.0011 9 6 5.1708 5.2891 -0.0009 10 6 4.3347 5.5764 -1.2495 11 6 4.3364 5.5766 1.2490 12 6 6.3939 6.1696 -0.0012 13 1 7.3786 5.7260 -0.0019 14 6 6.2557 7.5414 -0.0015 15 7 5.0566 8.0816 -0.0011 16 14 7.7718 8.6328 -0.0026 17 1 8.9915 7.7857 -0.0023 18 1 7.7640 9.4897 -1.2153 19 1 7.7651 9.4904 1.2097 20 6 3.5317 -0.6974 0.0003 21 6 2.2416 -1.1117 0.0002 22 17 1.6870 -2.7568 0.0006 23 1 -0.3634 -0.0004 -1.0276 24 1 -0.3633 -0.8898 0.5143 25 1 -0.3634 0.8902 0.5135 26 1 6.1952 3.6161 0.8887 27 1 6.1943 3.6153 -0.8913 28 1 3.4500 4.9397 -1.2488 29 1 4.0295 6.6229 -1.2495 30 1 4.9291 5.3717 -2.1398 31 1 4.9321 5.3718 2.1386 32 1 4.0313 6.6229 1.2494 33 1 3.4518 4.9398 1.2496 34 1 4.9596 9.0467 -0.0010 35 1 4.4169 -1.3162 0.0010 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835304192.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:17 Heat of formation + Delta-G solvation = -31.224374 kcal Electronic energy + Delta-G solvation = -20220.124716 eV Core-core repulsion = 16859.690440 eV Total energy + Delta-G solvation = -3360.434276 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.90496 -41.24135 -38.30914 -38.03532 -36.62474 -34.72812 -33.25754 -31.79313 -29.12823 -27.57462 -27.50386 -27.03279 -24.67570 -22.75606 -21.67542 -20.71267 -19.32835 -18.24446 -17.84494 -17.75353 -17.21709 -17.07371 -16.56882 -15.47120 -15.23783 -14.92839 -14.79511 -14.66015 -13.89277 -13.70153 -13.53356 -13.37211 -13.17452 -13.14749 -12.83582 -12.82313 -12.58870 -12.33969 -12.13571 -12.02824 -11.90137 -11.73868 -11.28589 -11.22412 -10.72595 -10.44202 -10.39726 -10.22338 -8.03417 -6.21806 0.09105 0.29572 0.62682 1.24143 1.43883 1.46810 1.57228 1.91072 1.92939 2.46718 3.05571 3.20047 3.78069 4.00029 4.22473 4.24960 4.27489 4.28783 4.34746 4.59839 4.60919 4.82714 4.96636 5.05004 5.20493 5.23501 5.30415 5.32946 5.50148 5.63437 5.65259 6.06489 6.17531 6.35999 6.41612 6.73505 6.83785 7.46266 8.96738 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.041659 B = 0.003311 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.958053 B = 8453.852933 C = 8929.447634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.262 5.262 3 N -0.227 5.227 4 C -0.019 4.019 5 C 0.545 3.455 6 O -0.527 6.527 7 O -0.340 6.340 8 C 0.094 3.906 9 C 0.062 3.938 10 C -0.118 4.118 11 C -0.117 4.117 12 C -0.533 4.533 13 H 0.052 0.948 14 C 0.027 3.973 15 N -0.901 5.901 16 Si 0.955 3.045 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.280 1.280 20 C -0.153 4.153 21 C 0.054 3.946 22 Cl 0.038 6.962 23 H 0.113 0.887 24 H 0.125 0.875 25 H 0.113 0.887 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.027 0.973 29 H 0.064 0.936 30 H 0.021 0.979 31 H 0.021 0.979 32 H 0.064 0.936 33 H 0.027 0.973 34 H 0.262 0.738 35 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.015 -19.935 0.034 23.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.055 5.055 3 N -0.068 5.068 4 C -0.175 4.175 5 C 0.389 3.611 6 O -0.415 6.415 7 O -0.255 6.255 8 C 0.021 3.979 9 C 0.061 3.939 10 C -0.175 4.175 11 C -0.175 4.175 12 C -0.571 4.571 13 H 0.071 0.929 14 C -0.173 4.173 15 N -0.539 5.539 16 Si 0.781 3.219 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.181 4.181 21 C -0.096 4.096 22 Cl 0.066 6.934 23 H 0.131 0.869 24 H 0.143 0.857 25 H 0.132 0.868 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.046 0.954 29 H 0.083 0.917 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.083 0.917 33 H 0.046 0.954 34 H 0.072 0.928 35 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -12.636 -19.060 0.034 22.868 hybrid contribution 1.445 0.011 -0.010 1.445 sum -11.191 -19.049 0.024 22.093 Atomic orbital electron populations 1.22846 0.69395 1.07857 1.07152 1.46270 1.09814 1.00844 1.48583 1.73896 1.03038 1.12758 1.17065 1.20538 0.89708 0.92716 1.14508 1.19926 0.86974 0.81893 0.72333 1.90804 1.24259 1.78801 1.47644 1.86646 1.39895 1.16495 1.82422 1.23414 0.83923 0.90127 1.00465 1.18273 0.94934 0.86734 0.93912 1.21611 0.97337 1.01910 0.96672 1.21611 0.97338 1.01906 0.96669 1.21236 0.92088 0.91646 1.52099 0.92929 1.25538 0.98530 0.98893 0.94325 1.69961 1.22515 1.11222 1.50214 0.85553 0.80024 0.78712 0.77607 1.19560 1.20569 1.20576 1.21591 0.97185 0.92004 1.07342 1.22060 0.90350 0.85108 1.12063 1.98419 1.89271 1.08598 1.97125 0.86896 0.85660 0.86823 0.92621 0.92619 0.95379 0.91720 0.96001 0.95997 0.91724 0.95381 0.92844 0.79505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.63 11.16 127.77 1.43 2.05 16 2 N -0.26 -5.43 3.71 -358.74 -1.33 -6.77 16 3 N -0.23 -6.79 11.98 -48.25 -0.58 -7.37 16 4 C -0.02 -0.63 7.16 42.42 0.30 -0.33 16 5 C 0.55 21.55 7.97 70.29 0.56 22.11 16 6 O -0.53 -22.25 16.71 19.86 0.33 -21.92 16 7 O -0.34 -14.78 8.89 -56.42 -0.50 -15.28 16 8 C 0.09 4.36 4.27 71.98 0.31 4.67 16 9 C 0.06 3.14 0.58 -52.93 -0.03 3.11 16 10 C -0.12 -5.89 8.11 71.98 0.58 -5.30 16 11 C -0.12 -5.88 8.11 71.98 0.58 -5.30 16 12 C -0.53 -29.10 8.01 25.60 0.21 -28.90 16 13 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 14 C 0.03 1.46 5.15 84.65 0.44 1.89 16 15 N -0.90 -49.80 9.35 21.45 0.20 -49.60 16 16 Si 0.96 43.05 29.54 68.60 2.03 45.08 16 17 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 18 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 19 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 20 C -0.15 -3.84 10.79 22.45 0.24 -3.60 16 21 C 0.05 1.07 7.46 83.48 0.62 1.70 16 22 Cl 0.04 0.49 28.70 -2.72 -0.08 0.41 16 23 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.13 0.53 7.74 -2.38 -0.02 0.51 16 25 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.06 2.58 8.14 -2.38 -0.02 2.56 16 27 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 28 H 0.03 1.30 7.68 -2.39 -0.02 1.28 16 29 H 0.06 3.48 6.07 -2.38 -0.01 3.47 16 30 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.02 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.06 3.48 6.07 -2.39 -0.01 3.47 16 33 H 0.03 1.30 7.68 -2.39 -0.02 1.28 16 34 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 35 H 0.19 4.05 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -65.72 317.15 6.41 -59.31 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: 1.10 Total: 4.03 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: 5.24 Total: -7.90 kcal Atomic # 7 Polarization: -62.02 SS G_CDS: -1.71 Total: -63.73 kcal Atomic # 8 Polarization: -37.03 SS G_CDS: -0.17 Total: -37.20 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 17 Polarization: 0.49 SS G_CDS: -0.08 Total: 0.41 kcal Total: -65.72 6.41 -59.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835304192.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.088 kcal (2) G-P(sol) polarization free energy of solvation -65.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds