Wall clock time and date at job start Tue Mar 31 2020 05:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86794 * 120.00073 * 2 1 4 4 H 1.48500 * 109.47108 * 270.00308 * 3 2 1 5 5 H 1.48499 * 109.47400 * 30.00025 * 3 2 1 6 6 H 1.48505 * 109.47577 * 150.00239 * 3 2 1 7 7 C 1.39939 * 120.00097 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00067 * 175.53925 * 7 2 1 9 9 C 1.41404 * 119.99944 * 355.54141 * 7 2 1 10 10 C 1.40786 * 120.21220 * 34.96213 * 9 7 2 11 11 C 1.37635 * 119.88372 * 180.27569 * 10 9 7 12 12 C 1.38533 * 120.32251 * 359.47446 * 11 10 9 13 13 C 1.39241 * 120.42705 * 0.27868 * 12 11 10 14 14 N 1.39958 * 119.94531 * 179.97438 * 13 12 11 15 15 C 1.34774 * 119.99887 * 144.78813 * 14 13 12 16 16 O 1.21589 * 120.00052 * 4.31369 * 15 14 13 17 17 N 1.34775 * 120.00148 * 184.31372 * 15 14 13 18 18 O 1.41596 * 120.00192 * 179.97438 * 17 15 14 19 19 C 1.42907 * 114.00022 * 179.97438 * 18 17 15 20 20 C 1.53005 * 109.47119 * 180.02562 * 19 18 17 21 21 F 1.39904 * 109.47215 * 300.00291 * 20 19 18 22 22 F 1.39895 * 109.47044 * 60.00023 * 20 19 18 23 23 C 1.38271 * 120.11132 * 359.97438 * 13 12 11 24 24 H 0.96998 * 119.99870 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.05252 * 0.02665 * 10 9 7 26 26 H 1.08005 * 119.83805 * 179.75401 * 11 10 9 27 27 H 1.07998 * 119.78395 * 180.25593 * 12 11 10 28 28 H 0.97004 * 120.00109 * 324.79731 * 14 13 12 29 29 H 0.97007 * 120.00100 * 0.02562 * 17 15 14 30 30 H 1.08998 * 109.47089 * 300.00318 * 19 18 17 31 31 H 1.09002 * 109.46490 * 60.00616 * 19 18 17 32 32 H 1.08996 * 109.46915 * 180.02562 * 20 19 18 33 33 H 1.08000 * 120.16325 * 180.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4398 2.6527 0.7000 6 1 3.5399 1.4402 0.7000 7 6 2.0080 -1.2119 -0.0005 8 1 3.0855 -1.2133 -0.0733 9 6 1.3042 -2.4347 0.0941 10 6 0.0424 -2.5748 -0.5146 11 6 -0.6392 -3.7662 -0.4134 12 6 -0.0851 -4.8327 0.2756 13 6 1.1641 -4.7103 0.8783 14 7 1.7142 -5.7941 1.5723 15 6 3.0447 -6.0072 1.5440 16 8 3.7754 -5.2148 0.9814 17 7 3.5652 -7.0986 2.1392 18 8 4.9630 -7.3228 2.1089 19 6 5.3749 -8.5160 2.7789 20 6 6.8956 -8.6552 2.6837 21 9 7.2746 -8.7211 1.3385 22 9 7.5038 -7.5486 3.2858 23 6 1.8622 -3.5199 0.7922 24 1 -0.4850 0.8400 0.0004 25 1 -0.3915 -1.7476 -1.0565 26 1 -1.6089 -3.8716 -0.8772 27 1 -0.6258 -5.7649 0.3461 28 1 1.1378 -6.3919 2.0737 29 1 2.9822 -7.7310 2.5877 30 1 5.0800 -8.4645 3.8269 31 1 4.9007 -9.3781 2.3098 32 1 7.2098 -9.5655 3.1943 33 1 2.8314 -3.4241 1.2590 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836762195.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:19 Heat of formation + Delta-G solvation = -92.444599 kcal Electronic energy + Delta-G solvation = -21581.368604 eV Core-core repulsion = 17666.482939 eV Total energy + Delta-G solvation = -3914.885664 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.23909 -47.27139 -39.88507 -37.95043 -36.87751 -34.37753 -33.16541 -32.30978 -29.76144 -29.74616 -27.62887 -25.22629 -23.47370 -22.12291 -20.87517 -20.20972 -18.88532 -18.25840 -17.79186 -17.60625 -16.94096 -16.58725 -15.75741 -15.37992 -14.99252 -14.60868 -14.54663 -14.21305 -14.00818 -13.60708 -13.60207 -13.03879 -12.86179 -12.64315 -12.15900 -11.72978 -11.54986 -11.52189 -11.13414 -11.05142 -10.90827 -10.37250 -10.22872 -9.69389 -9.42870 -9.21409 -8.94691 -8.87711 -7.32724 -6.88015 -6.51425 -4.31052 1.42956 2.79025 2.95259 3.16610 3.19814 3.28380 3.32911 3.63824 3.71506 3.83955 4.00136 4.06887 4.34144 4.52489 4.77692 4.80675 4.89649 5.69683 6.22689 6.38107 6.49115 6.70072 6.75055 7.07660 7.17853 7.23295 7.40124 7.71573 7.80382 8.00893 8.18866 8.27924 8.40270 8.75861 8.90850 9.04778 9.05011 10.38286 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.020620 B = 0.003550 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.603884 B = 7885.131406 C = 8984.121406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.071 3.929 3 Si 0.914 3.086 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.460 4.460 8 H 0.077 0.923 9 C 0.114 3.886 10 C -0.159 4.159 11 C -0.099 4.099 12 C -0.248 4.248 13 C 0.157 3.843 14 N -0.669 5.669 15 C 0.713 3.287 16 O -0.541 6.541 17 N -0.617 5.617 18 O -0.115 6.115 19 C -0.025 4.025 20 C 0.282 3.718 21 F -0.195 7.195 22 F -0.195 7.195 23 C -0.198 4.198 24 H 0.276 0.724 25 H 0.129 0.871 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.396 0.604 29 H 0.401 0.599 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.134 0.866 33 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.247 -17.659 7.879 20.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.144 4.144 3 Si 0.739 3.261 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.491 4.491 8 H 0.095 0.905 9 C 0.111 3.889 10 C -0.179 4.179 11 C -0.119 4.119 12 C -0.270 4.270 13 C 0.066 3.934 14 N -0.319 5.319 15 C 0.414 3.586 16 O -0.413 6.413 17 N -0.325 5.325 18 O -0.117 6.117 19 C -0.104 4.104 20 C 0.226 3.774 21 F -0.176 7.176 22 F -0.176 7.176 23 C -0.220 4.220 24 H 0.087 0.913 25 H 0.147 0.853 26 H 0.111 0.889 27 H 0.108 0.892 28 H 0.229 0.771 29 H 0.240 0.760 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.151 0.849 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.971 -16.604 7.234 19.070 hybrid contribution -0.163 -0.208 0.735 0.782 sum 5.807 -16.813 7.969 19.491 Atomic orbital electron populations 1.69759 1.07244 1.28555 1.38630 1.25849 0.94914 1.01070 0.92540 0.86209 0.80310 0.80468 0.79074 1.19526 1.20376 1.18686 1.19551 0.94868 0.90029 1.44655 0.90498 1.17564 0.91889 0.91516 0.87912 1.21646 0.97325 0.96355 1.02526 1.20523 0.98185 0.93806 0.99342 1.20077 0.97597 0.99175 1.10145 1.17220 0.94072 0.85220 0.96927 1.42277 1.04268 1.31261 1.54115 1.15427 0.82803 0.80546 0.79826 1.91019 1.58305 1.44920 1.47037 1.46238 0.95226 1.27261 1.63768 1.90706 1.02858 1.41093 1.77060 1.24219 0.94627 0.91095 1.00425 1.21886 0.89030 0.89042 0.77398 1.93058 1.92371 1.96797 1.35418 1.93058 1.84715 1.56867 1.82967 1.21344 1.02080 0.92373 1.06157 0.91276 0.85299 0.88862 0.89174 0.77090 0.75992 0.88960 0.88968 0.84925 0.86679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.68 10.62 55.55 0.59 -21.09 16 2 C 0.07 1.86 5.42 -17.34 -0.09 1.77 16 3 Si 0.91 19.90 29.56 -169.99 -5.03 14.87 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 6 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.46 -13.00 9.04 -37.74 -0.34 -13.34 16 8 H 0.08 2.16 7.85 -52.49 -0.41 1.75 16 9 C 0.11 3.19 5.55 -106.85 -0.59 2.60 16 10 C -0.16 -4.20 8.67 -38.84 -0.34 -4.53 16 11 C -0.10 -2.31 10.02 -39.69 -0.40 -2.70 16 12 C -0.25 -5.37 9.97 -39.10 -0.39 -5.76 16 13 C 0.16 3.56 6.29 -83.76 -0.53 3.03 16 14 N -0.67 -11.78 5.34 -14.27 -0.08 -11.86 16 15 C 0.71 13.58 8.55 -86.92 -0.74 12.84 16 16 O -0.54 -13.49 14.19 -12.86 -0.18 -13.67 16 17 N -0.62 -8.39 6.39 27.63 0.18 -8.21 16 18 O -0.11 -1.66 11.00 -29.62 -0.33 -1.98 16 19 C -0.02 -0.18 6.45 37.16 0.24 0.06 16 20 C 0.28 2.15 5.63 37.16 0.21 2.36 16 21 F -0.20 -2.20 17.28 2.25 0.04 -2.16 16 22 F -0.19 -2.21 17.28 2.25 0.04 -2.17 16 23 C -0.20 -5.25 8.43 -38.69 -0.33 -5.58 16 24 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 25 H 0.13 3.53 6.15 -52.49 -0.32 3.20 16 26 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 27 H 0.09 1.64 8.06 -52.49 -0.42 1.21 16 28 H 0.40 4.99 8.84 -40.82 -0.36 4.63 16 29 H 0.40 3.31 8.56 -40.82 -0.35 2.96 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.13 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.12 3.21 6.23 -52.49 -0.33 2.89 16 LS Contribution 303.45 15.07 4.57 4.57 Total: -1.00 -36.21 303.45 -6.51 -42.72 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -3.02 Total: 8.24 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -3.30 Total: -9.26 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: 0.69 Total: -41.16 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.51 Total: -15.66 kcal Atomic # 9 Polarization: -4.41 SS G_CDS: 0.08 Total: -4.33 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.03 Total: 14.87 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -36.21 -6.51 -42.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836762195.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.727 kcal (2) G-P(sol) polarization free energy of solvation -36.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds