Wall clock time and date at job start Tue Mar 31 2020 05:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86794 * 120.00073 * 2 1 4 4 H 1.48500 * 109.47108 * 270.00308 * 3 2 1 5 5 H 1.48499 * 109.47400 * 30.00025 * 3 2 1 6 6 H 1.48505 * 109.47577 * 150.00239 * 3 2 1 7 7 C 1.39939 * 120.00097 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00067 * 175.53925 * 7 2 1 9 9 C 1.41404 * 119.99944 * 355.54141 * 7 2 1 10 10 C 1.40786 * 120.21220 * 34.96213 * 9 7 2 11 11 C 1.37635 * 119.88372 * 180.27569 * 10 9 7 12 12 C 1.38533 * 120.32251 * 359.47446 * 11 10 9 13 13 C 1.39241 * 120.42705 * 0.27868 * 12 11 10 14 14 N 1.39958 * 119.94531 * 179.97438 * 13 12 11 15 15 C 1.34774 * 119.99887 * 144.78813 * 14 13 12 16 16 O 1.21589 * 120.00052 * 4.31369 * 15 14 13 17 17 N 1.34775 * 120.00148 * 184.31372 * 15 14 13 18 18 O 1.41596 * 120.00192 * 179.97438 * 17 15 14 19 19 C 1.42907 * 114.00022 * 179.97438 * 18 17 15 20 20 C 1.53005 * 109.47119 * 180.02562 * 19 18 17 21 21 F 1.39904 * 109.47215 * 300.00291 * 20 19 18 22 22 F 1.39895 * 109.47044 * 60.00023 * 20 19 18 23 23 C 1.38271 * 120.11132 * 359.97438 * 13 12 11 24 24 H 0.96998 * 119.99870 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.05252 * 0.02665 * 10 9 7 26 26 H 1.08005 * 119.83805 * 179.75401 * 11 10 9 27 27 H 1.07998 * 119.78395 * 180.25593 * 12 11 10 28 28 H 0.97004 * 120.00109 * 324.79731 * 14 13 12 29 29 H 0.97007 * 120.00100 * 0.02562 * 17 15 14 30 30 H 1.08998 * 109.47089 * 300.00318 * 19 18 17 31 31 H 1.09002 * 109.46490 * 60.00616 * 19 18 17 32 32 H 1.08996 * 109.46915 * 180.02562 * 20 19 18 33 33 H 1.08000 * 120.16325 * 180.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4398 2.6527 0.7000 6 1 3.5399 1.4402 0.7000 7 6 2.0080 -1.2119 -0.0005 8 1 3.0855 -1.2133 -0.0733 9 6 1.3042 -2.4347 0.0941 10 6 0.0424 -2.5748 -0.5146 11 6 -0.6392 -3.7662 -0.4134 12 6 -0.0851 -4.8327 0.2756 13 6 1.1641 -4.7103 0.8783 14 7 1.7142 -5.7941 1.5723 15 6 3.0447 -6.0072 1.5440 16 8 3.7754 -5.2148 0.9814 17 7 3.5652 -7.0986 2.1392 18 8 4.9630 -7.3228 2.1089 19 6 5.3749 -8.5160 2.7789 20 6 6.8956 -8.6552 2.6837 21 9 7.2746 -8.7211 1.3385 22 9 7.5038 -7.5486 3.2858 23 6 1.8622 -3.5199 0.7922 24 1 -0.4850 0.8400 0.0004 25 1 -0.3915 -1.7476 -1.0565 26 1 -1.6089 -3.8716 -0.8772 27 1 -0.6258 -5.7649 0.3461 28 1 1.1378 -6.3919 2.0737 29 1 2.9822 -7.7310 2.5877 30 1 5.0800 -8.4645 3.8269 31 1 4.9007 -9.3781 2.3098 32 1 7.2098 -9.5655 3.1943 33 1 2.8314 -3.4241 1.2590 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836762195.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:19 Heat of formation + Delta-G solvation = -118.415401 kcal Electronic energy + Delta-G solvation = -21582.494782 eV Core-core repulsion = 17666.482939 eV Total energy + Delta-G solvation = -3916.011843 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.95124 -48.01954 -41.41462 -39.34535 -38.36774 -36.16317 -34.93984 -33.56051 -31.69582 -30.69102 -29.27766 -27.21697 -24.12100 -23.73840 -22.74038 -21.86265 -19.93236 -19.75885 -19.08211 -18.49177 -17.93534 -17.47748 -17.23968 -16.89918 -16.61399 -16.38152 -15.82063 -15.69315 -14.92823 -14.78443 -14.67756 -14.57504 -14.38038 -13.98118 -13.56524 -13.35998 -12.99589 -12.92834 -12.80016 -12.39263 -12.19213 -12.13610 -12.04038 -11.56554 -11.24442 -11.07890 -10.72343 -10.13378 -9.28311 -8.72238 -8.45672 -6.39285 0.31277 0.96923 1.05622 1.37008 1.46590 1.53495 2.08086 2.24906 2.61491 2.81369 2.86909 3.28830 3.41186 3.47178 3.70893 4.04384 4.23091 4.36977 4.51621 4.65327 4.96731 5.12097 5.15658 5.18249 5.38350 5.44882 5.71399 5.84866 6.04072 6.12382 6.19053 6.39723 6.73711 6.98344 6.99751 7.04179 7.52926 8.43838 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.020620 B = 0.003550 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.603884 B = 7885.131406 C = 8984.121406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.033 3.967 3 Si 0.984 3.016 4 H -0.260 1.260 5 H -0.261 1.261 6 H -0.270 1.270 7 C -0.508 4.508 8 H 0.056 0.944 9 C 0.081 3.919 10 C -0.184 4.184 11 C -0.097 4.097 12 C -0.228 4.228 13 C 0.165 3.835 14 N -0.651 5.651 15 C 0.710 3.290 16 O -0.609 6.609 17 N -0.589 5.589 18 O -0.159 6.159 19 C -0.035 4.035 20 C 0.269 3.731 21 F -0.221 7.221 22 F -0.221 7.221 23 C -0.227 4.227 24 H 0.285 0.715 25 H 0.112 0.888 26 H 0.128 0.872 27 H 0.142 0.858 28 H 0.424 0.576 29 H 0.430 0.570 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.198 0.802 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.033 -20.292 9.054 22.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.179 4.179 3 Si 0.805 3.195 4 H -0.184 1.184 5 H -0.185 1.185 6 H -0.195 1.195 7 C -0.539 4.539 8 H 0.075 0.925 9 C 0.079 3.921 10 C -0.204 4.204 11 C -0.116 4.116 12 C -0.250 4.250 13 C 0.072 3.928 14 N -0.304 5.304 15 C 0.410 3.590 16 O -0.486 6.486 17 N -0.297 5.297 18 O -0.163 6.163 19 C -0.112 4.112 20 C 0.215 3.785 21 F -0.202 7.202 22 F -0.203 7.203 23 C -0.249 4.249 24 H 0.096 0.904 25 H 0.130 0.870 26 H 0.146 0.854 27 H 0.159 0.841 28 H 0.263 0.737 29 H 0.274 0.726 30 H 0.143 0.857 31 H 0.144 0.856 32 H 0.215 0.785 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.711 -19.352 8.471 21.644 hybrid contribution 0.220 0.326 0.447 0.595 sum 4.931 -19.026 8.918 21.583 Atomic orbital electron populations 1.69804 1.08232 1.29867 1.38643 1.26619 0.95862 1.03858 0.91534 0.85184 0.78607 0.76188 0.79526 1.18438 1.18472 1.19457 1.19684 0.94212 0.91927 1.48072 0.92534 1.17864 0.93114 0.92096 0.89032 1.21582 0.97423 0.97660 1.03709 1.20921 0.99172 0.92750 0.98709 1.20549 0.96670 1.00455 1.07288 1.17255 0.94096 0.85194 0.96259 1.41902 1.04414 1.30344 1.53737 1.15606 0.82673 0.81064 0.79607 1.90994 1.59966 1.47648 1.49973 1.45624 0.96111 1.25963 1.62029 1.90699 1.02334 1.44689 1.78563 1.24744 0.94564 0.89745 1.02164 1.22820 0.88948 0.90310 0.76419 1.93004 1.92635 1.96896 1.37711 1.93003 1.85251 1.58749 1.83296 1.21269 1.01683 0.94319 1.07602 0.90412 0.86973 0.85368 0.84055 0.73691 0.72569 0.85733 0.85584 0.78526 0.89500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.89 10.62 21.82 0.23 -45.66 16 2 C 0.03 1.82 5.42 85.25 0.46 2.28 16 3 Si 0.98 42.17 29.56 68.60 2.03 44.20 16 4 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 5 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 7 C -0.51 -30.69 9.04 23.46 0.21 -30.48 16 8 H 0.06 3.48 7.85 -2.91 -0.02 3.45 16 9 C 0.08 4.81 5.55 -21.30 -0.12 4.69 16 10 C -0.18 -9.96 8.67 22.75 0.20 -9.76 16 11 C -0.10 -4.32 10.02 22.20 0.22 -4.09 16 12 C -0.23 -9.15 9.97 22.58 0.23 -8.93 16 13 C 0.17 7.35 6.29 38.09 0.24 7.59 16 14 N -0.65 -21.66 5.34 -317.34 -1.69 -23.36 16 15 C 0.71 26.68 8.55 179.06 1.53 28.21 16 16 O -0.61 -31.62 14.19 13.36 0.19 -31.43 16 17 N -0.59 -14.79 6.39 -184.75 -1.18 -15.97 16 18 O -0.16 -4.40 11.00 -21.42 -0.24 -4.64 16 19 C -0.03 -0.41 6.45 71.98 0.46 0.05 16 20 C 0.27 3.47 5.63 71.98 0.41 3.88 16 21 F -0.22 -4.78 17.28 44.97 0.78 -4.00 16 22 F -0.22 -4.86 17.28 44.97 0.78 -4.08 16 23 C -0.23 -12.59 8.43 22.85 0.19 -12.40 16 24 H 0.29 14.08 8.30 -92.71 -0.77 13.31 16 25 H 0.11 6.37 6.15 -2.91 -0.02 6.35 16 26 H 0.13 4.77 8.06 -2.91 -0.02 4.75 16 27 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 28 H 0.42 9.02 8.84 -92.71 -0.82 8.20 16 29 H 0.43 5.46 8.56 -92.70 -0.79 4.67 16 30 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.20 -0.02 8.14 -2.39 -0.02 -0.04 16 33 H 0.09 5.24 6.23 -2.91 -0.02 5.22 16 Total: -1.00 -87.54 303.45 4.50 -83.05 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: -0.43 Total: 20.85 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: 4.03 Total: -18.96 kcal Atomic # 7 Polarization: -82.34 SS G_CDS: -2.64 Total: -84.99 kcal Atomic # 8 Polarization: -36.02 SS G_CDS: -0.05 Total: -36.07 kcal Atomic # 9 Polarization: -9.63 SS G_CDS: 1.55 Total: -8.08 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -87.54 4.50 -83.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836762195.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.370 kcal (2) G-P(sol) polarization free energy of solvation -87.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds