Wall clock time and date at job start Tue Mar 31 2020 06:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 120.00649 * 2 1 4 4 H 1.48499 * 109.47510 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47316 * 300.00148 * 3 2 1 6 6 H 1.48506 * 109.47340 * 59.99680 * 3 2 1 7 7 C 1.38801 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00108 * 180.02562 * 7 2 1 9 9 S 1.76205 * 119.99861 * 359.97438 * 7 2 1 10 10 C 1.81003 * 99.99989 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46977 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46827 * 179.97438 * 11 10 9 13 13 O 1.45203 * 109.46964 * 180.02562 * 12 11 10 14 14 C 1.34797 * 116.99940 * 180.02562 * 13 12 11 15 15 O 1.21526 * 119.99957 * 0.02562 * 14 13 12 16 16 C 1.46950 * 119.99644 * 180.02562 * 14 13 12 17 17 C 1.33091 * 119.99831 * 187.32015 * 16 14 13 18 18 C 1.50703 * 119.99665 * 15.52777 * 17 16 14 19 19 H 1.08999 * 110.45799 * 11.95833 * 18 17 16 20 20 C 1.54513 * 110.50894 * 249.35283 * 18 17 16 21 21 C 1.54476 * 104.06096 * 241.22036 * 20 18 17 22 22 O 1.44420 * 104.80675 * 336.02429 * 21 20 18 23 23 C 1.44429 * 105.27532 * 40.50951 * 22 21 20 24 24 H 0.97008 * 119.99322 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46694 * 60.00063 * 10 9 7 26 26 H 1.08998 * 109.47162 * 300.00305 * 10 9 7 27 27 H 1.09008 * 109.46899 * 60.00322 * 11 10 9 28 28 H 1.08998 * 109.47554 * 300.00225 * 11 10 9 29 29 H 1.08995 * 109.46992 * 60.00312 * 12 11 10 30 30 H 1.08998 * 109.47398 * 300.00517 * 12 11 10 31 31 H 1.08002 * 120.00266 * 7.32209 * 16 14 13 32 32 H 1.07994 * 119.99811 * 195.52999 * 17 16 14 33 33 H 1.08994 * 110.50741 * 122.57688 * 20 18 17 34 34 H 1.09004 * 110.51079 * 359.86912 * 20 18 17 35 35 H 1.09000 * 110.37291 * 94.85677 * 21 20 18 36 36 H 1.08998 * 110.36928 * 217.19013 * 21 20 18 37 37 H 1.08999 * 110.37193 * 200.65552 * 23 22 21 38 38 H 1.08996 * 110.36808 * 78.32291 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7104 1.3462 0.0006 5 1 1.8918 2.3964 -1.2125 6 1 1.8917 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1291 -2.7280 -0.0005 10 6 2.5156 -3.8916 -0.0005 11 6 1.9789 -5.3243 0.0001 12 6 3.1510 -6.3078 -0.0005 13 8 2.6417 -7.6676 -0.0005 14 6 3.5518 -8.6620 -0.0005 15 8 4.7384 -8.3996 -0.0001 16 6 3.1091 -10.0632 -0.0011 17 6 3.9986 -11.0422 0.1458 18 6 5.3824 -10.7325 0.6561 19 1 5.4243 -9.7177 1.0517 20 6 6.4278 -10.9197 -0.4662 21 6 7.3581 -12.0307 0.0690 22 8 7.2131 -11.9737 1.5048 23 6 5.8048 -11.7526 1.7365 24 1 -0.4849 0.8402 0.0004 25 1 3.1242 -3.7315 0.8895 26 1 3.1242 -3.7315 -0.8905 27 1 1.3701 -5.4847 -0.8898 28 1 1.3705 -5.4841 0.8903 29 1 3.7601 -6.1477 0.8890 30 1 3.7590 -6.1479 -0.8909 31 1 2.0618 -10.2986 -0.1207 32 1 3.7288 -12.0584 -0.1008 33 1 6.9865 -9.9975 -0.6253 34 1 5.9440 -11.2385 -1.3895 35 1 7.0416 -13.0040 -0.3060 36 1 8.3909 -11.8309 -0.2164 37 1 5.6444 -11.3392 2.7322 38 1 5.2500 -12.6832 1.6173 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838041811.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:16 Heat of formation + Delta-G solvation = -124.902405 kcal Electronic energy + Delta-G solvation = -19264.809549 eV Core-core repulsion = 16005.897138 eV Total energy + Delta-G solvation = -3258.912411 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.107 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.69403 -39.58888 -37.00859 -34.65067 -33.51333 -32.45565 -31.29219 -29.33382 -26.82000 -25.53420 -23.97705 -23.12147 -21.50666 -21.29245 -19.87141 -17.92471 -17.42339 -16.87692 -16.67844 -16.49077 -15.62540 -15.30465 -14.83020 -14.70718 -14.45945 -14.25579 -13.67447 -13.35786 -13.03975 -12.91284 -12.66858 -12.24511 -12.11355 -11.78682 -11.52362 -11.39204 -11.33754 -11.13826 -10.98949 -10.87660 -10.67632 -10.35696 -10.25028 -10.03327 -9.72360 -9.60565 -9.09599 -8.36578 -6.57775 -6.26093 -3.97068 0.73948 2.60494 2.70320 3.19770 3.21748 3.29019 3.53737 3.59916 4.18740 4.25787 4.35156 4.51250 4.58984 4.72452 4.88835 4.94363 5.01452 5.09077 5.11624 5.17195 5.30141 5.35892 5.36963 5.43974 5.47298 5.66375 5.71718 5.75759 5.76232 5.85694 6.04601 6.18622 6.41101 6.43643 6.48044 6.66496 7.58274 7.67095 8.33965 9.20496 10.82127 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.039232 B = 0.002255 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.523032 B =12415.468941 C =12883.920549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.070 3.930 3 Si 0.920 3.080 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.517 4.517 8 H 0.074 0.926 9 S -0.125 6.125 10 C -0.114 4.114 11 C -0.098 4.098 12 C 0.073 3.927 13 O -0.352 6.352 14 C 0.489 3.511 15 O -0.505 6.505 16 C -0.189 4.189 17 C -0.048 4.048 18 C -0.126 4.126 19 H 0.126 0.874 20 C -0.135 4.135 21 C 0.043 3.957 22 O -0.374 6.374 23 C 0.052 3.948 24 H 0.267 0.733 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.145 0.855 32 H 0.137 0.863 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.874 -25.112 -0.257 26.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.665 4.665 8 H 0.092 0.908 9 S 0.103 5.897 10 C -0.263 4.263 11 C -0.136 4.136 12 C -0.002 4.002 13 O -0.268 6.268 14 C 0.335 3.665 15 O -0.397 6.397 16 C -0.208 4.208 17 C -0.066 4.066 18 C -0.144 4.144 19 H 0.143 0.857 20 C -0.172 4.172 21 C -0.034 4.034 22 O -0.293 6.293 23 C -0.025 4.025 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.163 0.837 32 H 0.155 0.845 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.094 -25.070 -0.097 26.344 hybrid contribution 1.640 1.394 -0.248 2.167 sum 9.734 -23.676 -0.345 25.601 Atomic orbital electron populations 1.70031 1.05929 1.27301 1.47209 1.25028 0.95112 0.99161 0.94541 0.86087 0.79646 0.81727 0.77905 1.19582 1.20539 1.20538 1.22736 0.94611 0.90637 1.58558 0.90791 1.84661 1.08834 0.99287 1.96876 1.23176 1.03413 0.96350 1.03325 1.21286 0.96467 0.91586 1.04311 1.23265 0.97747 0.76591 1.02556 1.86585 1.39833 1.16957 1.83430 1.21578 0.84271 0.87403 0.73215 1.90766 1.17947 1.85101 1.45863 1.22084 1.01437 0.88825 1.08439 1.23764 0.93938 0.98892 0.90006 1.22357 0.92128 1.03587 0.96303 0.85671 1.22838 0.96313 1.00092 0.98003 1.23489 1.00817 0.97831 0.81276 1.89141 1.24394 1.93554 1.22216 1.23516 0.82387 0.97274 0.99321 0.92300 0.91743 0.91745 0.90364 0.90347 0.91146 0.91156 0.83704 0.84514 0.89819 0.90627 0.92318 0.88992 0.88814 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.84 13.22 55.49 0.73 -25.11 16 2 C 0.07 2.00 5.49 -17.43 -0.10 1.90 16 3 Si 0.92 21.49 29.55 -169.99 -5.02 16.46 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.76 9.50 30.94 0.29 -14.47 16 8 H 0.07 2.05 7.80 -52.48 -0.41 1.64 16 9 S -0.12 -3.24 21.44 -107.50 -2.30 -5.54 16 10 C -0.11 -2.27 5.67 37.16 0.21 -2.06 16 11 C -0.10 -1.60 5.60 -26.73 -0.15 -1.75 16 12 C 0.07 1.05 5.48 37.16 0.20 1.26 16 13 O -0.35 -4.80 10.23 -40.76 -0.42 -5.22 16 14 C 0.49 6.00 7.69 34.26 0.26 6.27 16 15 O -0.51 -7.12 13.03 -19.28 -0.25 -7.37 16 16 C -0.19 -1.59 10.13 -37.85 -0.38 -1.97 16 17 C -0.05 -0.32 8.57 -36.10 -0.31 -0.63 16 18 C -0.13 -1.08 2.51 -90.20 -0.23 -1.30 16 19 H 0.13 1.42 5.21 -51.93 -0.27 1.15 16 20 C -0.13 -1.09 6.58 -25.16 -0.17 -1.25 16 21 C 0.04 0.32 7.63 37.93 0.29 0.61 16 22 O -0.37 -3.76 11.65 -35.23 -0.41 -4.17 16 23 C 0.05 0.41 7.18 37.93 0.27 0.68 16 24 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 26 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 27 H 0.08 1.27 8.14 -51.92 -0.42 0.85 16 28 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.52 7.73 -51.93 -0.40 0.12 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.35 7.86 -51.93 -0.41 -0.05 16 LS Contribution 336.90 15.07 5.08 5.08 Total: -1.00 -32.60 336.90 -8.09 -40.69 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -5.70 Total: -2.10 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 0.20 Total: -12.72 kcal Atomic # 7 Polarization: -25.84 SS G_CDS: 0.73 Total: -25.11 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -1.08 Total: -16.76 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -3.24 SS G_CDS: -2.30 Total: -5.54 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.60 -8.09 -40.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838041811.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.216 kcal (2) G-P(sol) polarization free energy of solvation -32.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds