Wall clock time and date at job start Tue Mar 31 2020 06:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 120.00649 * 2 1 4 4 H 1.48499 * 109.47510 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47316 * 300.00148 * 3 2 1 6 6 H 1.48506 * 109.47340 * 59.99680 * 3 2 1 7 7 C 1.38801 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00108 * 180.02562 * 7 2 1 9 9 S 1.76205 * 119.99861 * 359.97438 * 7 2 1 10 10 C 1.81003 * 99.99989 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46977 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46827 * 179.97438 * 11 10 9 13 13 O 1.45203 * 109.46964 * 180.02562 * 12 11 10 14 14 C 1.34797 * 116.99940 * 180.02562 * 13 12 11 15 15 O 1.21526 * 119.99957 * 0.02562 * 14 13 12 16 16 C 1.46950 * 119.99644 * 180.02562 * 14 13 12 17 17 C 1.33091 * 119.99831 * 187.32015 * 16 14 13 18 18 C 1.50703 * 119.99665 * 15.52777 * 17 16 14 19 19 H 1.08999 * 110.45799 * 11.95833 * 18 17 16 20 20 C 1.54513 * 110.50894 * 249.35283 * 18 17 16 21 21 C 1.54476 * 104.06096 * 241.22036 * 20 18 17 22 22 O 1.44420 * 104.80675 * 336.02429 * 21 20 18 23 23 C 1.44429 * 105.27532 * 40.50951 * 22 21 20 24 24 H 0.97008 * 119.99322 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46694 * 60.00063 * 10 9 7 26 26 H 1.08998 * 109.47162 * 300.00305 * 10 9 7 27 27 H 1.09008 * 109.46899 * 60.00322 * 11 10 9 28 28 H 1.08998 * 109.47554 * 300.00225 * 11 10 9 29 29 H 1.08995 * 109.46992 * 60.00312 * 12 11 10 30 30 H 1.08998 * 109.47398 * 300.00517 * 12 11 10 31 31 H 1.08002 * 120.00266 * 7.32209 * 16 14 13 32 32 H 1.07994 * 119.99811 * 195.52999 * 17 16 14 33 33 H 1.08994 * 110.50741 * 122.57688 * 20 18 17 34 34 H 1.09004 * 110.51079 * 359.86912 * 20 18 17 35 35 H 1.09000 * 110.37291 * 94.85677 * 21 20 18 36 36 H 1.08998 * 110.36928 * 217.19013 * 21 20 18 37 37 H 1.08999 * 110.37193 * 200.65552 * 23 22 21 38 38 H 1.08996 * 110.36808 * 78.32291 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7104 1.3462 0.0006 5 1 1.8918 2.3964 -1.2125 6 1 1.8917 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1291 -2.7280 -0.0005 10 6 2.5156 -3.8916 -0.0005 11 6 1.9789 -5.3243 0.0001 12 6 3.1510 -6.3078 -0.0005 13 8 2.6417 -7.6676 -0.0005 14 6 3.5518 -8.6620 -0.0005 15 8 4.7384 -8.3996 -0.0001 16 6 3.1091 -10.0632 -0.0011 17 6 3.9986 -11.0422 0.1458 18 6 5.3824 -10.7325 0.6561 19 1 5.4243 -9.7177 1.0517 20 6 6.4278 -10.9197 -0.4662 21 6 7.3581 -12.0307 0.0690 22 8 7.2131 -11.9737 1.5048 23 6 5.8048 -11.7526 1.7365 24 1 -0.4849 0.8402 0.0004 25 1 3.1242 -3.7315 0.8895 26 1 3.1242 -3.7315 -0.8905 27 1 1.3701 -5.4847 -0.8898 28 1 1.3705 -5.4841 0.8903 29 1 3.7601 -6.1477 0.8890 30 1 3.7590 -6.1479 -0.8909 31 1 2.0618 -10.2986 -0.1207 32 1 3.7288 -12.0584 -0.1008 33 1 6.9865 -9.9975 -0.6253 34 1 5.9440 -11.2385 -1.3895 35 1 7.0416 -13.0040 -0.3060 36 1 8.3909 -11.8309 -0.2164 37 1 5.6444 -11.3392 2.7322 38 1 5.2500 -12.6832 1.6173 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838041811.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:15 Heat of formation + Delta-G solvation = -144.348429 kcal Electronic energy + Delta-G solvation = -19265.652792 eV Core-core repulsion = 16005.897138 eV Total energy + Delta-G solvation = -3259.755653 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.107 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.60792 -40.29667 -38.01772 -35.36394 -34.90842 -34.59496 -31.96175 -29.95476 -28.26332 -27.51703 -24.86804 -23.74808 -22.73419 -22.13353 -20.69747 -19.56789 -18.76441 -17.76933 -17.51743 -17.33702 -16.91463 -16.37737 -16.28690 -15.92308 -15.73540 -15.13928 -14.88818 -14.32347 -14.13613 -14.08085 -13.80008 -13.57859 -13.14680 -12.99084 -12.92308 -12.62926 -12.45871 -12.40946 -12.35333 -12.08369 -12.05407 -11.57061 -11.49885 -11.17367 -10.98949 -10.73130 -10.38117 -10.32674 -8.69931 -8.39712 -6.16341 0.05190 1.27816 1.37795 1.44886 1.55255 1.87204 1.91626 2.25643 2.94894 3.01642 3.27222 3.58699 3.72422 3.80719 3.82778 3.95713 3.97409 4.13100 4.13930 4.30639 4.33423 4.34551 4.50363 4.52755 4.65899 4.73140 4.81807 4.87203 4.99509 5.03170 5.07673 5.10269 5.17667 5.32487 5.38743 5.63678 5.83325 6.16555 6.72115 7.02908 8.69914 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.039232 B = 0.002255 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.523032 B =12415.468941 C =12883.920549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.015 3.985 3 Si 0.996 3.004 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.539 4.539 8 H 0.073 0.927 9 S -0.185 6.185 10 C -0.091 4.091 11 C -0.086 4.086 12 C 0.082 3.918 13 O -0.359 6.359 14 C 0.480 3.520 15 O -0.531 6.531 16 C -0.205 4.205 17 C -0.020 4.020 18 C -0.132 4.132 19 H 0.093 0.907 20 C -0.134 4.134 21 C 0.042 3.958 22 O -0.403 6.403 23 C 0.052 3.948 24 H 0.272 0.728 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.170 0.830 32 H 0.181 0.819 33 H 0.059 0.941 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.481 -26.847 -0.574 28.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.190 4.190 3 Si 0.817 3.183 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.687 4.687 8 H 0.092 0.908 9 S 0.043 5.957 10 C -0.240 4.240 11 C -0.124 4.124 12 C 0.007 3.993 13 O -0.275 6.275 14 C 0.329 3.671 15 O -0.424 6.424 16 C -0.224 4.224 17 C -0.038 4.038 18 C -0.151 4.151 19 H 0.111 0.889 20 C -0.171 4.171 21 C -0.034 4.034 22 O -0.323 6.323 23 C -0.024 4.024 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.188 0.812 32 H 0.198 0.802 33 H 0.078 0.922 34 H 0.110 0.890 35 H 0.101 0.899 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.696 -26.822 -0.413 28.200 hybrid contribution 1.521 1.806 -0.136 2.365 sum 10.217 -25.016 -0.549 27.027 Atomic orbital electron populations 1.70153 1.07637 1.28570 1.47898 1.26075 0.96074 1.03133 0.93727 0.84948 0.78367 0.76601 0.78336 1.18765 1.19603 1.19634 1.23077 0.94801 0.91901 1.58943 0.90844 1.84630 1.13113 1.00873 1.97056 1.23063 1.00765 0.96588 1.03591 1.21102 0.97082 0.89857 1.04401 1.22962 0.96471 0.77164 1.02712 1.86575 1.40445 1.16660 1.83854 1.22421 0.83852 0.88437 0.72394 1.90776 1.18893 1.85521 1.47198 1.22230 1.03075 0.86432 1.10634 1.24101 0.92093 1.00449 0.87201 1.22301 0.93662 1.02239 0.96856 0.88918 1.22809 0.96283 0.99464 0.98586 1.23623 1.01042 0.98620 0.80119 1.89109 1.25732 1.93730 1.23716 1.23619 0.81776 0.98190 0.98855 0.91879 0.91432 0.91380 0.90263 0.90311 0.91079 0.91001 0.81236 0.80182 0.92176 0.89049 0.89896 0.88670 0.89110 0.89329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.53 13.22 21.65 0.29 -54.24 16 2 C 0.01 0.85 5.49 84.86 0.47 1.32 16 3 Si 1.00 43.98 29.55 68.60 2.03 46.00 16 4 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.54 -31.14 9.50 67.95 0.65 -30.50 16 8 H 0.07 4.10 7.80 -2.91 -0.02 4.07 16 9 S -0.19 -9.82 21.44 -56.49 -1.21 -11.03 16 10 C -0.09 -3.64 5.67 71.98 0.41 -3.23 16 11 C -0.09 -2.77 5.60 30.59 0.17 -2.60 16 12 C 0.08 2.33 5.48 71.98 0.39 2.72 16 13 O -0.36 -9.55 10.23 -57.08 -0.58 -10.13 16 14 C 0.48 11.47 7.69 70.10 0.54 12.01 16 15 O -0.53 -15.08 13.03 19.75 0.26 -14.82 16 16 C -0.21 -2.97 10.13 23.40 0.24 -2.73 16 17 C -0.02 -0.21 8.57 24.53 0.21 0.00 16 18 C -0.13 -2.08 2.51 -10.52 -0.03 -2.11 16 19 H 0.09 2.13 5.21 -2.40 -0.01 2.12 16 20 C -0.13 -2.00 6.58 31.61 0.21 -1.79 16 21 C 0.04 0.55 7.63 72.48 0.55 1.11 16 22 O -0.40 -7.61 11.65 -148.98 -1.74 -9.35 16 23 C 0.05 0.71 7.18 72.48 0.52 1.24 16 24 H 0.27 15.13 8.31 -92.70 -0.77 14.36 16 25 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 26 H 0.07 2.66 8.14 -2.40 -0.02 2.64 16 27 H 0.08 2.55 8.14 -2.38 -0.02 2.53 16 28 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 29 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 32 H 0.18 0.38 8.06 -2.91 -0.02 0.36 16 33 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.09 1.04 7.73 -2.39 -0.02 1.03 16 35 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.09 0.72 7.86 -2.39 -0.02 0.70 16 Total: -1.00 -71.99 336.90 4.40 -67.59 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 1.04 Total: 10.53 kcal Atomic # 6 Polarization: -28.89 SS G_CDS: 4.33 Total: -24.56 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: 0.29 Total: -54.24 kcal Atomic # 8 Polarization: -32.24 SS G_CDS: -2.06 Total: -34.30 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: -9.82 SS G_CDS: -1.21 Total: -11.03 kcal Total: -71.99 4.40 -67.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838041811.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.756 kcal (2) G-P(sol) polarization free energy of solvation -71.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds