Wall clock time and date at job start Tue Mar 31 2020 06:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86804 * 120.00074 * 2 1 4 4 H 1.48498 * 109.47105 * 270.00445 * 3 2 1 5 5 H 1.48503 * 109.46856 * 30.00341 * 3 2 1 6 6 H 1.48499 * 109.47033 * 150.00285 * 3 2 1 7 7 C 1.38801 * 119.99934 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99768 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99877 * 0.26797 * 7 2 1 10 10 C 1.81005 * 99.99761 * 179.72657 * 9 7 2 11 11 C 1.53004 * 109.46823 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46955 * 180.02562 * 11 10 9 13 13 O 1.45196 * 109.47273 * 179.97438 * 12 11 10 14 14 C 1.34803 * 117.00283 * 179.97438 * 13 12 11 15 15 O 1.21528 * 119.99946 * 0.02562 * 14 13 12 16 16 C 1.46947 * 120.00038 * 179.97438 * 14 13 12 17 17 C 1.33081 * 119.99846 * 186.23686 * 16 14 13 18 18 C 1.50700 * 120.00244 * 18.96238 * 17 16 14 19 19 H 1.09001 * 110.45308 * 11.71335 * 18 17 16 20 20 C 1.54503 * 110.51149 * 134.32143 * 18 17 16 21 21 C 1.54480 * 104.06378 * 118.64431 * 20 18 17 22 22 O 1.44425 * 104.80349 * 23.98016 * 21 20 18 23 23 C 1.44428 * 105.27111 * 319.48589 * 22 21 20 24 24 H 0.97003 * 120.00014 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47233 * 300.00206 * 10 9 7 26 26 H 1.09002 * 109.46799 * 60.00627 * 10 9 7 27 27 H 1.09007 * 109.47272 * 299.99878 * 11 10 9 28 28 H 1.08997 * 109.47355 * 60.00265 * 11 10 9 29 29 H 1.08997 * 109.46882 * 299.99906 * 12 11 10 30 30 H 1.09004 * 109.47423 * 59.99602 * 12 11 10 31 31 H 1.08005 * 120.00005 * 6.23831 * 16 14 13 32 32 H 1.08002 * 119.99678 * 198.96384 * 17 16 14 33 33 H 1.08994 * 110.51106 * 237.29076 * 20 18 17 34 34 H 1.09005 * 110.51345 * 0.02562 * 20 18 17 35 35 H 1.09004 * 110.37086 * 142.80604 * 21 20 18 36 36 H 1.09002 * 110.37280 * 265.14430 * 21 20 18 37 37 H 1.08995 * 110.37679 * 281.67979 * 23 22 21 38 38 H 1.09000 * 110.37110 * 159.34138 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 16 1.1292 -2.7280 -0.0084 10 6 2.5158 -3.8914 -0.0145 11 6 1.9792 -5.3242 -0.0225 12 6 3.1512 -6.3077 -0.0270 13 8 2.6421 -7.6674 -0.0340 14 6 3.5523 -8.6618 -0.0392 15 8 4.7389 -8.3994 -0.0375 16 6 3.1097 -10.0630 -0.0459 17 6 4.0018 -11.0431 0.0742 18 6 5.3702 -10.7522 0.6346 19 1 5.3965 -9.7567 1.0778 20 6 5.7661 -11.8203 1.6783 21 6 7.0339 -12.4735 1.0847 22 8 7.5846 -11.4734 0.2001 23 6 6.4456 -10.8863 -0.4663 24 1 -0.4850 0.8401 0.0004 25 1 3.1244 -3.7267 -0.9036 26 1 3.1244 -3.7359 0.8763 27 1 1.3704 -5.4892 0.8665 28 1 1.3708 -5.4794 -0.9135 29 1 3.7604 -6.1428 -0.9158 30 1 3.7594 -6.1524 0.8642 31 1 2.0603 -10.2974 -0.1482 32 1 3.7452 -12.0471 -0.2300 33 1 5.9905 -11.3527 2.6370 34 1 4.9723 -12.5591 1.7888 35 1 7.7441 -12.7120 1.8765 36 1 6.7717 -13.3717 0.5256 37 1 6.0932 -11.5411 -1.2633 38 1 6.7038 -9.9057 -0.8660 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838041812.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:19 Heat of formation + Delta-G solvation = -125.663473 kcal Electronic energy + Delta-G solvation = -19267.674030 eV Core-core repulsion = 16008.728617 eV Total energy + Delta-G solvation = -3258.945413 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.107 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.68020 -39.57969 -36.98739 -34.67187 -33.50635 -32.45088 -31.38113 -29.21409 -26.80969 -25.52918 -24.03069 -23.09021 -21.51342 -21.29104 -19.91061 -17.88556 -17.41561 -16.82712 -16.59340 -16.53716 -15.58196 -15.40605 -14.82532 -14.71074 -14.45092 -14.29978 -13.69631 -13.26831 -13.11118 -12.83424 -12.67899 -12.18424 -12.07686 -11.91353 -11.57944 -11.37600 -11.30439 -11.12768 -10.97738 -10.89103 -10.67865 -10.35610 -10.22787 -10.08670 -9.70229 -9.60831 -9.08335 -8.36618 -6.57365 -6.25450 -3.96559 0.70727 2.60370 2.70477 3.21082 3.22018 3.28524 3.54128 3.63475 4.19338 4.25109 4.27913 4.53063 4.57960 4.69324 4.88003 4.95656 5.02822 5.09595 5.12139 5.17756 5.27309 5.35760 5.36957 5.47722 5.49977 5.61953 5.66385 5.72357 5.76661 5.85812 6.04848 6.18305 6.44096 6.44866 6.46282 6.66694 7.58469 7.67056 8.34215 9.20944 10.82691 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.039552 B = 0.002260 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.763194 B =12388.726459 C =12888.224791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.071 3.929 3 Si 0.920 3.080 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.518 4.518 8 H 0.073 0.927 9 S -0.124 6.124 10 C -0.114 4.114 11 C -0.098 4.098 12 C 0.073 3.927 13 O -0.352 6.352 14 C 0.489 3.511 15 O -0.507 6.507 16 C -0.189 4.189 17 C -0.048 4.048 18 C -0.120 4.120 19 H 0.120 0.880 20 C -0.149 4.149 21 C 0.043 3.957 22 O -0.375 6.375 23 C 0.062 3.938 24 H 0.268 0.732 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.146 0.854 32 H 0.138 0.862 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.377 -25.781 1.157 27.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.746 3.254 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.666 4.666 8 H 0.092 0.908 9 S 0.104 5.896 10 C -0.263 4.263 11 C -0.136 4.136 12 C -0.002 4.002 13 O -0.268 6.268 14 C 0.336 3.664 15 O -0.399 6.399 16 C -0.208 4.208 17 C -0.066 4.066 18 C -0.138 4.138 19 H 0.138 0.862 20 C -0.187 4.187 21 C -0.034 4.034 22 O -0.293 6.293 23 C -0.015 4.015 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.163 0.837 32 H 0.155 0.845 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 7.650 -25.658 1.130 26.798 hybrid contribution 1.568 1.293 0.016 2.033 sum 9.218 -24.364 1.146 26.075 Atomic orbital electron populations 1.70017 1.05927 1.27411 1.47125 1.25025 0.95109 0.99145 0.94531 0.86142 0.79435 0.81415 0.78394 1.20238 1.20730 1.19659 1.22694 0.94586 0.90660 1.58678 0.90839 1.84654 1.08823 0.99262 1.96880 1.23178 1.03417 0.96347 1.03333 1.21286 0.96468 0.91591 1.04302 1.23268 0.97748 0.76572 1.02581 1.86583 1.39827 1.16967 1.83421 1.21568 0.84283 0.87373 0.73209 1.90788 1.17973 1.85176 1.45914 1.22096 1.01437 0.88842 1.08443 1.23777 0.94044 0.98866 0.89947 1.22240 0.92515 1.02540 0.96506 0.86205 1.23056 0.98175 0.98100 0.99360 1.23444 0.95023 0.91636 0.93294 1.89157 1.29311 1.53109 1.57758 1.23350 0.84913 0.99327 0.93882 0.92248 0.91737 0.91736 0.90373 0.90351 0.91111 0.91152 0.83665 0.84481 0.90165 0.90219 0.89061 0.92282 0.92434 0.88077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.86 13.22 55.49 0.73 -25.13 16 2 C 0.07 2.01 5.49 -17.43 -0.10 1.92 16 3 Si 0.92 21.51 29.55 -169.99 -5.02 16.49 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 7 C -0.52 -14.80 9.50 30.94 0.29 -14.51 16 8 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 9 S -0.12 -3.23 21.44 -107.50 -2.30 -5.53 16 10 C -0.11 -2.28 5.67 37.16 0.21 -2.06 16 11 C -0.10 -1.60 5.60 -26.73 -0.15 -1.75 16 12 C 0.07 1.05 5.48 37.16 0.20 1.26 16 13 O -0.35 -4.80 10.23 -40.77 -0.42 -5.22 16 14 C 0.49 6.01 7.66 34.26 0.26 6.27 16 15 O -0.51 -7.14 12.83 -19.29 -0.25 -7.39 16 16 C -0.19 -1.59 10.12 -37.85 -0.38 -1.97 16 17 C -0.05 -0.33 8.54 -36.10 -0.31 -0.63 16 18 C -0.12 -1.03 2.49 -90.21 -0.22 -1.25 16 19 H 0.12 1.35 5.43 -51.93 -0.28 1.07 16 20 C -0.15 -0.98 6.73 -25.17 -0.17 -1.15 16 21 C 0.04 0.30 7.63 37.93 0.29 0.59 16 22 O -0.37 -3.99 11.65 -35.23 -0.41 -4.41 16 23 C 0.06 0.58 7.02 37.93 0.27 0.85 16 24 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 26 H 0.06 1.27 8.14 -51.92 -0.42 0.84 16 27 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.15 0.91 8.06 -52.48 -0.42 0.49 16 32 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.37 7.73 -51.93 -0.40 -0.03 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 0.45 7.86 -51.93 -0.41 0.04 16 38 H 0.10 1.09 7.80 -51.93 -0.41 0.68 16 LS Contribution 336.49 15.07 5.07 5.07 Total: -1.00 -32.60 336.49 -8.09 -40.69 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -5.69 Total: -2.13 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: 0.20 Total: -12.44 kcal Atomic # 7 Polarization: -25.86 SS G_CDS: 0.73 Total: -25.13 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -1.08 Total: -17.01 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -3.23 SS G_CDS: -2.30 Total: -5.53 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.60 -8.09 -40.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838041812.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.975 kcal (2) G-P(sol) polarization free energy of solvation -32.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds