Wall clock time and date at job start Tue Mar 31 2020 06:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86804 * 120.00074 * 2 1 4 4 H 1.48498 * 109.47105 * 270.00445 * 3 2 1 5 5 H 1.48503 * 109.46856 * 30.00341 * 3 2 1 6 6 H 1.48499 * 109.47033 * 150.00285 * 3 2 1 7 7 C 1.38801 * 119.99934 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99768 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99877 * 0.26797 * 7 2 1 10 10 C 1.81005 * 99.99761 * 179.72657 * 9 7 2 11 11 C 1.53004 * 109.46823 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46955 * 180.02562 * 11 10 9 13 13 O 1.45196 * 109.47273 * 179.97438 * 12 11 10 14 14 C 1.34803 * 117.00283 * 179.97438 * 13 12 11 15 15 O 1.21528 * 119.99946 * 0.02562 * 14 13 12 16 16 C 1.46947 * 120.00038 * 179.97438 * 14 13 12 17 17 C 1.33081 * 119.99846 * 186.23686 * 16 14 13 18 18 C 1.50700 * 120.00244 * 18.96238 * 17 16 14 19 19 H 1.09001 * 110.45308 * 11.71335 * 18 17 16 20 20 C 1.54503 * 110.51149 * 134.32143 * 18 17 16 21 21 C 1.54480 * 104.06378 * 118.64431 * 20 18 17 22 22 O 1.44425 * 104.80349 * 23.98016 * 21 20 18 23 23 C 1.44428 * 105.27111 * 319.48589 * 22 21 20 24 24 H 0.97003 * 120.00014 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47233 * 300.00206 * 10 9 7 26 26 H 1.09002 * 109.46799 * 60.00627 * 10 9 7 27 27 H 1.09007 * 109.47272 * 299.99878 * 11 10 9 28 28 H 1.08997 * 109.47355 * 60.00265 * 11 10 9 29 29 H 1.08997 * 109.46882 * 299.99906 * 12 11 10 30 30 H 1.09004 * 109.47423 * 59.99602 * 12 11 10 31 31 H 1.08005 * 120.00005 * 6.23831 * 16 14 13 32 32 H 1.08002 * 119.99678 * 198.96384 * 17 16 14 33 33 H 1.08994 * 110.51106 * 237.29076 * 20 18 17 34 34 H 1.09005 * 110.51345 * 0.02562 * 20 18 17 35 35 H 1.09004 * 110.37086 * 142.80604 * 21 20 18 36 36 H 1.09002 * 110.37280 * 265.14430 * 21 20 18 37 37 H 1.08995 * 110.37679 * 281.67979 * 23 22 21 38 38 H 1.09000 * 110.37110 * 159.34138 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 16 1.1292 -2.7280 -0.0084 10 6 2.5158 -3.8914 -0.0145 11 6 1.9792 -5.3242 -0.0225 12 6 3.1512 -6.3077 -0.0270 13 8 2.6421 -7.6674 -0.0340 14 6 3.5523 -8.6618 -0.0392 15 8 4.7389 -8.3994 -0.0375 16 6 3.1097 -10.0630 -0.0459 17 6 4.0018 -11.0431 0.0742 18 6 5.3702 -10.7522 0.6346 19 1 5.3965 -9.7567 1.0778 20 6 5.7661 -11.8203 1.6783 21 6 7.0339 -12.4735 1.0847 22 8 7.5846 -11.4734 0.2001 23 6 6.4456 -10.8863 -0.4663 24 1 -0.4850 0.8401 0.0004 25 1 3.1244 -3.7267 -0.9036 26 1 3.1244 -3.7359 0.8763 27 1 1.3704 -5.4892 0.8665 28 1 1.3708 -5.4794 -0.9135 29 1 3.7604 -6.1428 -0.9158 30 1 3.7594 -6.1524 0.8642 31 1 2.0603 -10.2974 -0.1482 32 1 3.7452 -12.0471 -0.2300 33 1 5.9905 -11.3527 2.6370 34 1 4.9723 -12.5591 1.7888 35 1 7.7441 -12.7120 1.8765 36 1 6.7717 -13.3717 0.5256 37 1 6.0932 -11.5411 -1.2633 38 1 6.7038 -9.9057 -0.8660 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838041812.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:19 Heat of formation + Delta-G solvation = -145.212900 kcal Electronic energy + Delta-G solvation = -19268.521757 eV Core-core repulsion = 16008.728617 eV Total energy + Delta-G solvation = -3259.793140 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.107 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.59734 -40.30348 -38.00230 -35.38839 -34.90453 -34.59256 -32.01647 -29.86253 -28.25648 -27.51337 -24.92849 -23.73751 -22.72906 -22.10829 -20.73886 -19.56492 -18.73205 -17.74786 -17.48879 -17.31272 -16.91037 -16.41195 -16.29720 -15.93851 -15.75721 -15.14174 -14.94196 -14.36281 -14.09352 -13.93856 -13.81089 -13.67431 -13.14387 -12.95893 -12.81902 -12.64264 -12.51129 -12.43249 -12.39620 -12.13662 -11.93300 -11.57256 -11.50373 -11.16162 -11.00973 -10.79668 -10.38258 -10.29883 -8.69781 -8.39329 -6.16091 0.02219 1.27752 1.38979 1.44740 1.54683 1.85618 1.92745 2.25997 2.95125 3.02660 3.27405 3.59448 3.68850 3.80149 3.82952 3.95638 3.97681 4.13416 4.15947 4.30814 4.31668 4.34430 4.49887 4.51841 4.66061 4.77107 4.83324 4.86240 4.99702 5.03766 5.06433 5.09664 5.16323 5.33265 5.38642 5.60798 5.83751 6.16508 6.71950 7.03063 8.70015 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.039552 B = 0.002260 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.763194 B =12388.726459 C =12888.224791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.015 3.985 3 Si 0.995 3.005 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.264 1.264 7 C -0.541 4.541 8 H 0.073 0.927 9 S -0.185 6.185 10 C -0.091 4.091 11 C -0.086 4.086 12 C 0.082 3.918 13 O -0.358 6.358 14 C 0.481 3.519 15 O -0.533 6.533 16 C -0.205 4.205 17 C -0.021 4.021 18 C -0.126 4.126 19 H 0.088 0.912 20 C -0.143 4.143 21 C 0.037 3.963 22 O -0.406 6.406 23 C 0.061 3.939 24 H 0.272 0.728 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.171 0.829 32 H 0.182 0.818 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.855 -27.676 1.179 29.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.190 4.190 3 Si 0.817 3.183 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.188 1.188 7 C -0.688 4.688 8 H 0.092 0.908 9 S 0.044 5.956 10 C -0.240 4.240 11 C -0.124 4.124 12 C 0.007 3.993 13 O -0.275 6.275 14 C 0.329 3.671 15 O -0.426 6.426 16 C -0.224 4.224 17 C -0.039 4.039 18 C -0.145 4.145 19 H 0.106 0.894 20 C -0.180 4.180 21 C -0.039 4.039 22 O -0.326 6.326 23 C -0.015 4.015 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.188 0.812 32 H 0.199 0.801 33 H 0.092 0.908 34 H 0.127 0.873 35 H 0.117 0.883 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.123 -27.573 1.156 28.767 hybrid contribution 1.501 1.742 0.029 2.300 sum 9.624 -25.830 1.186 27.591 Atomic orbital electron populations 1.70143 1.07629 1.28636 1.47819 1.26073 0.96074 1.03120 0.93717 0.85003 0.78140 0.76337 0.78845 1.19261 1.19832 1.18820 1.23047 0.94815 0.91927 1.59054 0.90835 1.84621 1.13092 1.00843 1.97059 1.23066 1.00773 0.96598 1.03589 1.21101 0.97076 0.89849 1.04403 1.22965 0.96478 0.77164 1.02724 1.86572 1.40427 1.16658 1.83845 1.22420 0.83860 0.88428 0.72369 1.90798 1.18944 1.85591 1.47270 1.22246 1.03107 0.86431 1.10609 1.24131 0.92157 1.00387 0.87212 1.22186 0.93609 1.01743 0.96914 0.89440 1.23047 0.98843 0.97927 0.98202 1.23687 0.95343 0.91538 0.93347 1.89121 1.30488 1.54309 1.58657 1.23327 0.84977 0.98583 0.94641 0.91876 0.91386 0.91433 0.90311 0.90250 0.90988 0.91088 0.81161 0.80081 0.90811 0.87310 0.88255 0.90104 0.90370 0.90655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.58 13.22 21.65 0.29 -54.29 16 2 C 0.02 0.87 5.49 84.86 0.47 1.34 16 3 Si 0.99 44.03 29.55 68.60 2.03 46.05 16 4 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 5 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 6 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 7 C -0.54 -31.26 9.50 67.95 0.65 -30.62 16 8 H 0.07 4.10 7.80 -2.91 -0.02 4.08 16 9 S -0.18 -9.80 21.44 -56.49 -1.21 -11.01 16 10 C -0.09 -3.65 5.67 71.98 0.41 -3.25 16 11 C -0.09 -2.77 5.60 30.60 0.17 -2.60 16 12 C 0.08 2.33 5.48 71.98 0.39 2.73 16 13 O -0.36 -9.56 10.23 -57.14 -0.58 -10.15 16 14 C 0.48 11.53 7.66 70.10 0.54 12.06 16 15 O -0.53 -15.25 12.83 19.74 0.25 -15.00 16 16 C -0.21 -2.97 10.12 23.40 0.24 -2.73 16 17 C -0.02 -0.22 8.54 24.53 0.21 -0.01 16 18 C -0.13 -1.98 2.49 -10.53 -0.03 -2.01 16 19 H 0.09 2.00 5.43 -2.39 -0.01 1.98 16 20 C -0.14 -1.53 6.73 31.61 0.21 -1.32 16 21 C 0.04 0.44 7.63 72.49 0.55 0.99 16 22 O -0.41 -8.40 11.65 -148.98 -1.74 -10.13 16 23 C 0.06 1.11 7.02 72.49 0.51 1.62 16 24 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 25 H 0.07 2.66 8.14 -2.40 -0.02 2.64 16 26 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 27 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 28 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 29 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 31 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 32 H 0.18 0.36 8.06 -2.91 -0.02 0.34 16 33 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 34 H 0.11 0.54 7.73 -2.38 -0.02 0.52 16 35 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.08 1.05 7.86 -2.39 -0.02 1.03 16 38 H 0.08 1.71 7.80 -2.39 -0.02 1.69 16 Total: -1.00 -72.47 336.49 4.39 -68.09 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: 1.04 Total: 10.24 kcal Atomic # 6 Polarization: -28.11 SS G_CDS: 4.32 Total: -23.80 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: 0.29 Total: -54.29 kcal Atomic # 8 Polarization: -33.21 SS G_CDS: -2.07 Total: -35.28 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 16 Polarization: -9.80 SS G_CDS: -1.21 Total: -11.01 kcal Total: -72.47 4.39 -68.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838041812.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.128 kcal (2) G-P(sol) polarization free energy of solvation -72.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds