Wall clock time and date at job start Tue Mar 31 2020 06:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99948 * 3 2 1 5 5 H 1.48497 * 109.46782 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00225 * 3 2 1 7 7 C 1.38803 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 0.27728 * 7 2 1 10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2 11 11 C 1.53003 * 109.47148 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47256 * 179.97438 * 11 10 9 13 13 O 1.45193 * 109.47299 * 180.02562 * 12 11 10 14 14 C 1.34802 * 117.00262 * 179.97438 * 13 12 11 15 15 O 1.21529 * 119.99407 * 0.02562 * 14 13 12 16 16 C 1.46948 * 120.00130 * 180.02562 * 14 13 12 17 17 C 1.33076 * 119.99967 * 179.97438 * 16 14 13 18 18 C 1.50706 * 120.00095 * 180.02562 * 17 16 14 19 19 H 1.09001 * 110.75067 * 359.29754 * 18 17 16 20 20 C 1.55306 * 110.84531 * 122.77359 * 18 17 16 21 21 C 1.55214 * 100.82103 * 152.18244 * 20 18 17 22 22 O 1.43646 * 105.25811 * 323.81192 * 21 20 18 23 23 C 1.43234 * 109.97417 * 24.29224 * 22 21 20 24 24 H 0.97000 * 119.99219 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47409 * 300.00151 * 10 9 7 26 26 H 1.09002 * 109.47152 * 60.00041 * 10 9 7 27 27 H 1.08994 * 109.47386 * 300.00126 * 11 10 9 28 28 H 1.09002 * 109.46677 * 60.00219 * 11 10 9 29 29 H 1.08994 * 109.47157 * 300.00427 * 12 11 10 30 30 H 1.09003 * 109.46585 * 60.00185 * 12 11 10 31 31 H 1.08006 * 119.99921 * 0.02562 * 16 14 13 32 32 H 1.07997 * 119.99990 * 0.02562 * 17 16 14 33 33 H 1.08998 * 111.12389 * 270.23568 * 20 18 17 34 34 H 1.08991 * 111.12910 * 34.40681 * 20 18 17 35 35 H 1.09006 * 110.36671 * 204.79968 * 21 20 18 36 36 H 1.08994 * 110.12723 * 82.70991 * 21 20 18 37 37 H 1.09001 * 109.82809 * 238.77411 * 23 22 21 38 38 H 1.08995 * 109.90978 * 117.84367 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1042 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1042 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0086 10 6 2.5157 -3.8914 -0.0148 11 6 1.9791 -5.3243 -0.0217 12 6 3.1512 -6.3078 -0.0276 13 8 2.6420 -7.6675 -0.0348 14 6 3.5521 -8.6618 -0.0411 15 8 4.7387 -8.3993 -0.0402 16 6 3.1095 -10.0630 -0.0491 17 6 4.0080 -11.0446 -0.0559 18 6 3.5541 -12.4817 -0.0648 19 1 2.4659 -12.5430 -0.0520 20 6 4.1361 -13.2376 -1.2903 21 6 4.1890 -14.6879 -0.7399 22 8 4.5404 -14.5536 0.6464 23 6 4.1620 -13.2572 1.1237 24 1 -0.4849 0.8401 0.0004 25 1 3.1244 -3.7267 -0.9039 26 1 3.1244 -3.7361 0.8761 27 1 1.3708 -5.4887 0.8676 28 1 1.3703 -5.4798 -0.9123 29 1 3.7592 -6.1432 -0.9171 30 1 3.7604 -6.1522 0.8629 31 1 2.0549 -10.2962 -0.0504 32 1 5.0625 -10.8114 -0.0551 33 1 3.4697 -13.1643 -2.1497 34 1 5.1341 -12.8758 -1.5373 35 1 4.9469 -15.2666 -1.2680 36 1 3.2126 -15.1623 -0.8386 37 1 5.0396 -12.7306 1.4987 38 1 3.4224 -13.3556 1.9182 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838041813.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:22 Heat of formation + Delta-G solvation = -137.142241 kcal Electronic energy + Delta-G solvation = -18722.505285 eV Core-core repulsion = 15463.062115 eV Total energy + Delta-G solvation = -3259.443170 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.107 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.47411 -39.89099 -36.90773 -35.04905 -33.50469 -32.45288 -31.53272 -29.59698 -26.83372 -25.53897 -24.20407 -22.89856 -21.49176 -21.28960 -20.00897 -18.04679 -17.40993 -17.25445 -16.59085 -16.52650 -16.27122 -15.25224 -14.82948 -14.65110 -14.54348 -14.22306 -13.77555 -13.49748 -12.89825 -12.85346 -12.59174 -12.35336 -12.23500 -12.10957 -11.90475 -11.44437 -11.35492 -11.14876 -10.99296 -10.95177 -10.72825 -10.61523 -10.31227 -10.10251 -9.88561 -9.65492 -9.07873 -8.37427 -6.57697 -6.25619 -3.96873 0.73112 2.53724 2.72844 3.20811 3.22275 3.26810 3.33426 3.52631 3.92499 4.08156 4.19267 4.33839 4.50072 4.58843 4.64714 4.77723 4.86952 5.09003 5.11608 5.13943 5.17044 5.20478 5.28140 5.31933 5.36317 5.47058 5.50275 5.71543 5.75984 5.85984 5.94611 6.14554 6.39975 6.43480 6.44156 6.65567 7.57843 7.64729 8.33651 9.20593 10.82466 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.069308 B = 0.001905 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.899261 B =14695.949880 C =14863.444478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.072 3.928 3 Si 0.920 3.080 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.073 0.927 9 S -0.123 6.123 10 C -0.115 4.115 11 C -0.098 4.098 12 C 0.073 3.927 13 O -0.350 6.350 14 C 0.492 3.508 15 O -0.515 6.515 16 C -0.179 4.179 17 C -0.053 4.053 18 C -0.103 4.103 19 H 0.100 0.900 20 C -0.148 4.148 21 C 0.050 3.950 22 O -0.383 6.383 23 C 0.059 3.941 24 H 0.268 0.732 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.141 0.859 32 H 0.133 0.867 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.309 -27.174 -1.347 27.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.668 4.668 8 H 0.091 0.909 9 S 0.105 5.895 10 C -0.263 4.263 11 C -0.136 4.136 12 C -0.002 4.002 13 O -0.267 6.267 14 C 0.338 3.662 15 O -0.405 6.405 16 C -0.198 4.198 17 C -0.072 4.072 18 C -0.122 4.122 19 H 0.118 0.882 20 C -0.186 4.186 21 C -0.026 4.026 22 O -0.303 6.303 23 C -0.017 4.017 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.159 0.841 32 H 0.151 0.849 33 H 0.109 0.891 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.445 -27.263 -1.220 27.828 hybrid contribution 1.816 1.684 -0.153 2.482 sum 7.261 -25.579 -1.373 26.625 Atomic orbital electron populations 1.70011 1.05923 1.27526 1.47016 1.25020 0.95103 0.99116 0.94501 0.86201 0.79225 0.81097 0.78884 1.19909 1.20777 1.19907 1.22661 0.94570 0.90698 1.58842 0.90881 1.84646 1.08772 0.99207 1.96887 1.23184 1.03452 0.96344 1.03352 1.21287 0.96434 0.91564 1.04340 1.23287 0.97804 0.76487 1.02631 1.86570 1.39695 1.16977 1.83433 1.21452 0.84281 0.87411 0.73062 1.90856 1.18217 1.85349 1.46092 1.22034 1.01600 0.88789 1.07386 1.23613 1.00510 0.92705 0.90345 1.22014 1.01962 0.92034 0.96146 0.88196 1.23393 1.02868 0.94672 0.97624 1.23465 1.00912 0.96377 0.81842 1.88428 1.83246 1.33172 1.25406 1.23169 0.99909 0.83147 0.95509 0.92185 0.91726 0.91719 0.90311 0.90334 0.91115 0.91091 0.84084 0.84879 0.89117 0.89648 0.89341 0.91832 0.90584 0.90618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.83 13.22 55.49 0.73 -25.10 16 2 C 0.07 2.03 5.49 -17.43 -0.10 1.94 16 3 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.52 -14.84 9.50 30.94 0.29 -14.55 16 8 H 0.07 2.01 7.80 -52.49 -0.41 1.61 16 9 S -0.12 -3.20 21.44 -107.50 -2.30 -5.50 16 10 C -0.11 -2.29 5.67 37.16 0.21 -2.08 16 11 C -0.10 -1.60 5.60 -26.73 -0.15 -1.75 16 12 C 0.07 1.06 5.48 37.16 0.20 1.27 16 13 O -0.35 -4.88 10.23 -40.77 -0.42 -5.30 16 14 C 0.49 6.33 7.91 34.26 0.27 6.60 16 15 O -0.51 -7.94 16.01 -19.29 -0.31 -8.25 16 16 C -0.18 -1.56 9.77 -37.85 -0.37 -1.93 16 17 C -0.05 -0.38 8.28 -36.10 -0.30 -0.68 16 18 C -0.10 -0.55 3.31 -89.82 -0.30 -0.85 16 19 H 0.10 0.42 7.89 -51.93 -0.41 0.01 16 20 C -0.15 -0.68 6.63 -24.34 -0.16 -0.85 16 21 C 0.05 0.26 7.78 38.33 0.30 0.56 16 22 O -0.38 -3.09 11.36 -35.23 -0.40 -3.49 16 23 C 0.06 0.37 7.40 37.88 0.28 0.65 16 24 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.06 1.27 8.14 -51.92 -0.42 0.84 16 26 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 27 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.14 0.93 7.91 -52.48 -0.41 0.51 16 32 H 0.13 1.06 7.49 -52.49 -0.39 0.67 16 33 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.08 0.41 8.03 -51.93 -0.42 -0.01 16 35 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.08 0.47 7.81 -51.93 -0.41 0.07 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 342.59 15.07 5.16 5.16 Total: -1.00 -33.04 342.59 -8.18 -41.23 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -5.81 Total: -3.53 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: 0.18 Total: -11.66 kcal Atomic # 7 Polarization: -25.83 SS G_CDS: 0.73 Total: -25.10 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -1.13 Total: -17.04 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -3.20 SS G_CDS: -2.30 Total: -5.50 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.04 -8.18 -41.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838041813.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.916 kcal (2) G-P(sol) polarization free energy of solvation -33.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds