Wall clock time and date at job start Tue Mar 31 2020 06:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99948 * 3 2 1 5 5 H 1.48497 * 109.46782 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00225 * 3 2 1 7 7 C 1.38803 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 0.27728 * 7 2 1 10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2 11 11 C 1.53003 * 109.47148 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47256 * 179.97438 * 11 10 9 13 13 O 1.45193 * 109.47299 * 180.02562 * 12 11 10 14 14 C 1.34802 * 117.00262 * 179.97438 * 13 12 11 15 15 O 1.21529 * 119.99407 * 0.02562 * 14 13 12 16 16 C 1.46948 * 120.00130 * 180.02562 * 14 13 12 17 17 C 1.33076 * 119.99967 * 179.97438 * 16 14 13 18 18 C 1.50706 * 120.00095 * 180.02562 * 17 16 14 19 19 H 1.09001 * 110.75067 * 359.29754 * 18 17 16 20 20 C 1.55306 * 110.84531 * 122.77359 * 18 17 16 21 21 C 1.55214 * 100.82103 * 152.18244 * 20 18 17 22 22 O 1.43646 * 105.25811 * 323.81192 * 21 20 18 23 23 C 1.43234 * 109.97417 * 24.29224 * 22 21 20 24 24 H 0.97000 * 119.99219 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47409 * 300.00151 * 10 9 7 26 26 H 1.09002 * 109.47152 * 60.00041 * 10 9 7 27 27 H 1.08994 * 109.47386 * 300.00126 * 11 10 9 28 28 H 1.09002 * 109.46677 * 60.00219 * 11 10 9 29 29 H 1.08994 * 109.47157 * 300.00427 * 12 11 10 30 30 H 1.09003 * 109.46585 * 60.00185 * 12 11 10 31 31 H 1.08006 * 119.99921 * 0.02562 * 16 14 13 32 32 H 1.07997 * 119.99990 * 0.02562 * 17 16 14 33 33 H 1.08998 * 111.12389 * 270.23568 * 20 18 17 34 34 H 1.08991 * 111.12910 * 34.40681 * 20 18 17 35 35 H 1.09006 * 110.36671 * 204.79968 * 21 20 18 36 36 H 1.08994 * 110.12723 * 82.70991 * 21 20 18 37 37 H 1.09001 * 109.82809 * 238.77411 * 23 22 21 38 38 H 1.08995 * 109.90978 * 117.84367 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1042 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1042 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0086 10 6 2.5157 -3.8914 -0.0148 11 6 1.9791 -5.3243 -0.0217 12 6 3.1512 -6.3078 -0.0276 13 8 2.6420 -7.6675 -0.0348 14 6 3.5521 -8.6618 -0.0411 15 8 4.7387 -8.3993 -0.0402 16 6 3.1095 -10.0630 -0.0491 17 6 4.0080 -11.0446 -0.0559 18 6 3.5541 -12.4817 -0.0648 19 1 2.4659 -12.5430 -0.0520 20 6 4.1361 -13.2376 -1.2903 21 6 4.1890 -14.6879 -0.7399 22 8 4.5404 -14.5536 0.6464 23 6 4.1620 -13.2572 1.1237 24 1 -0.4849 0.8401 0.0004 25 1 3.1244 -3.7267 -0.9039 26 1 3.1244 -3.7361 0.8761 27 1 1.3708 -5.4887 0.8676 28 1 1.3703 -5.4798 -0.9123 29 1 3.7592 -6.1432 -0.9171 30 1 3.7604 -6.1522 0.8629 31 1 2.0549 -10.2962 -0.0504 32 1 5.0625 -10.8114 -0.0551 33 1 3.4697 -13.1643 -2.1497 34 1 5.1341 -12.8758 -1.5373 35 1 4.9469 -15.2666 -1.2680 36 1 3.2126 -15.1623 -0.8386 37 1 5.0396 -12.7306 1.4987 38 1 3.4224 -13.3556 1.9182 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838041813.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:22 Heat of formation + Delta-G solvation = -156.510401 kcal Electronic energy + Delta-G solvation = -18723.345151 eV Core-core repulsion = 15463.062115 eV Total energy + Delta-G solvation = -3260.283036 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.107 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.47722 -40.40515 -37.98440 -35.69822 -34.90456 -34.58658 -32.08144 -30.09147 -28.26764 -27.51832 -25.07577 -23.33224 -22.74997 -22.06463 -20.70459 -19.59814 -18.87143 -17.99993 -17.72652 -17.20911 -16.90318 -16.85714 -16.17155 -15.97634 -15.72678 -15.05529 -14.81210 -14.29609 -14.17837 -14.16076 -13.82336 -13.22234 -13.07569 -12.94756 -12.92688 -12.76096 -12.65066 -12.41435 -12.40968 -12.33597 -11.82753 -11.76605 -11.54502 -11.45143 -11.14708 -10.63874 -10.44670 -10.37778 -8.69141 -8.38685 -6.15515 -0.01996 1.26947 1.40779 1.43030 1.51606 1.85107 1.85754 2.26551 2.90442 2.95763 3.26707 3.41958 3.57529 3.82714 3.84469 3.92435 3.96173 4.03100 4.13150 4.20827 4.29735 4.30717 4.38159 4.49250 4.66615 4.74295 4.82916 4.88170 4.95272 4.99798 5.03572 5.09356 5.22703 5.29876 5.38760 5.40344 6.00954 6.16770 6.63649 7.03593 8.70386 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.069308 B = 0.001905 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.899261 B =14695.949880 C =14863.444478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.016 3.984 3 Si 0.994 3.006 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.074 0.926 9 S -0.184 6.184 10 C -0.092 4.092 11 C -0.086 4.086 12 C 0.080 3.920 13 O -0.354 6.354 14 C 0.489 3.511 15 O -0.548 6.548 16 C -0.191 4.191 17 C -0.029 4.029 18 C -0.097 4.097 19 H 0.119 0.881 20 C -0.145 4.145 21 C 0.045 3.955 22 O -0.409 6.409 23 C 0.055 3.945 24 H 0.272 0.728 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.167 0.833 32 H 0.123 0.877 33 H 0.107 0.893 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.820 -28.119 -1.657 28.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.189 4.189 3 Si 0.816 3.184 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.190 1.190 7 C -0.691 4.691 8 H 0.092 0.908 9 S 0.045 5.955 10 C -0.241 4.241 11 C -0.124 4.124 12 C 0.005 3.995 13 O -0.270 6.270 14 C 0.337 3.663 15 O -0.440 6.440 16 C -0.210 4.210 17 C -0.047 4.047 18 C -0.116 4.116 19 H 0.137 0.863 20 C -0.182 4.182 21 C -0.031 4.031 22 O -0.330 6.330 23 C -0.021 4.021 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.184 0.816 32 H 0.141 0.859 33 H 0.125 0.875 34 H 0.099 0.901 35 H 0.114 0.886 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.949 -28.229 -1.533 28.890 hybrid contribution 1.708 1.815 -0.057 2.493 sum 7.657 -26.414 -1.590 27.548 Atomic orbital electron populations 1.70141 1.07633 1.28694 1.47738 1.26064 0.96054 1.03086 0.93679 0.85065 0.77939 0.76085 0.79327 1.18966 1.19895 1.18985 1.23035 0.94866 0.91975 1.59193 0.90773 1.84616 1.13040 1.00786 1.97067 1.23074 1.00824 0.96562 1.03669 1.21103 0.97002 0.89798 1.04512 1.23029 0.96644 0.76921 1.02919 1.86559 1.40096 1.16723 1.83667 1.22203 0.83736 0.88433 0.71890 1.90842 1.19441 1.85826 1.47937 1.22075 1.03095 0.86358 1.09471 1.23721 0.99840 0.93549 0.87613 1.22040 1.03066 0.90307 0.96170 0.86269 1.23410 1.03035 0.94043 0.97755 1.23639 1.01826 0.96917 0.80703 1.88401 1.83698 1.33911 1.26940 1.23237 1.00047 0.82791 0.96067 0.91878 0.91327 0.91347 0.90191 0.90179 0.90861 0.90882 0.81579 0.85943 0.87465 0.90077 0.88621 0.90655 0.91114 0.89775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.35 13.22 21.65 0.29 -54.06 16 2 C 0.02 0.93 5.49 84.86 0.47 1.39 16 3 Si 0.99 43.74 29.55 68.60 2.03 45.76 16 4 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 5 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 6 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 7 C -0.54 -31.23 9.50 67.96 0.65 -30.58 16 8 H 0.07 4.09 7.80 -2.91 -0.02 4.07 16 9 S -0.18 -9.67 21.44 -56.49 -1.21 -10.89 16 10 C -0.09 -3.65 5.67 71.98 0.41 -3.24 16 11 C -0.09 -2.73 5.60 30.60 0.17 -2.56 16 12 C 0.08 2.26 5.48 71.98 0.39 2.65 16 13 O -0.35 -9.43 10.23 -57.14 -0.58 -10.02 16 14 C 0.49 12.07 7.91 70.10 0.55 12.62 16 15 O -0.55 -16.66 16.01 19.74 0.32 -16.34 16 16 C -0.19 -2.95 9.77 23.40 0.23 -2.72 16 17 C -0.03 -0.36 8.28 24.53 0.20 -0.16 16 18 C -0.10 -0.81 3.31 -10.28 -0.03 -0.84 16 19 H 0.12 0.60 7.89 -2.39 -0.02 0.58 16 20 C -0.15 -1.01 6.63 32.15 0.21 -0.80 16 21 C 0.04 0.38 7.78 72.74 0.57 0.95 16 22 O -0.41 -6.09 11.36 -148.98 -1.69 -7.79 16 23 C 0.05 0.61 7.40 72.45 0.54 1.14 16 24 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 25 H 0.07 2.65 8.14 -2.40 -0.02 2.63 16 26 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 27 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 28 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 29 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.17 1.69 7.91 -2.91 -0.02 1.67 16 32 H 0.12 1.84 7.49 -2.91 -0.02 1.82 16 33 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.08 0.65 8.03 -2.39 -0.02 0.63 16 35 H 0.10 0.65 8.14 -2.38 -0.02 0.63 16 36 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.07 0.82 7.81 -2.39 -0.02 0.81 16 38 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -71.33 342.59 4.53 -66.81 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: 1.03 Total: 8.66 kcal Atomic # 6 Polarization: -26.49 SS G_CDS: 4.35 Total: -22.14 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: 0.29 Total: -54.06 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -1.96 Total: -34.14 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -9.67 SS G_CDS: -1.21 Total: -10.89 kcal Total: -71.33 4.53 -66.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838041813.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.704 kcal (2) G-P(sol) polarization free energy of solvation -71.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds