Wall clock time and date at job start Tue Mar 31 2020 06:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86800 * 120.00036 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.47016 * 119.99774 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00131 * 3 2 1 7 7 C 1.38798 * 120.00311 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00434 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99771 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00013 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47102 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.46984 * 179.97438 * 11 10 9 13 13 O 1.45199 * 109.46923 * 179.97438 * 12 11 10 14 14 C 1.34235 * 117.00252 * 180.02562 * 13 12 11 15 15 O 1.20831 * 119.99800 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00579 * 180.02562 * 14 13 12 17 17 H 1.09006 * 110.66326 * 56.78137 * 16 14 13 18 18 C 1.55004 * 110.74521 * 293.36698 * 16 14 13 19 19 C 1.55817 * 102.78562 * 241.67248 * 18 16 14 20 20 H 1.09000 * 115.93905 * 158.43989 * 19 18 16 21 21 C 1.55827 * 105.32878 * 287.31358 * 19 18 16 22 22 C 1.55001 * 102.79019 * 72.68672 * 21 19 18 23 23 C 1.55820 * 110.75065 * 179.97438 * 16 14 13 24 24 H 1.08996 * 115.38725 * 320.21190 * 23 16 14 25 25 O 1.46535 * 101.24544 * 32.41651 * 19 18 16 26 26 H 0.97001 * 119.99662 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47183 * 299.99528 * 10 9 7 28 28 H 1.08991 * 109.47038 * 60.00359 * 10 9 7 29 29 H 1.09001 * 109.47313 * 300.00155 * 11 10 9 30 30 H 1.09007 * 109.47059 * 59.99968 * 11 10 9 31 31 H 1.08997 * 109.47642 * 299.99891 * 12 11 10 32 32 H 1.09003 * 109.47161 * 60.00717 * 12 11 10 33 33 H 1.08999 * 110.75130 * 359.97438 * 18 16 14 34 34 H 1.09004 * 110.74567 * 123.35076 * 18 16 14 35 35 H 1.08999 * 110.74722 * 191.01806 * 21 19 18 36 36 H 1.09004 * 110.74572 * 314.18068 * 21 19 18 37 37 H 1.09001 * 110.74957 * 241.67595 * 22 21 19 38 38 H 1.09004 * 110.74229 * 118.32478 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1041 1.6964 1.2126 6 1 3.1041 1.6965 -1.2124 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1294 -2.7279 -0.0019 10 6 2.5160 -3.8913 -0.0013 11 6 1.9794 -5.3242 -0.0031 12 6 3.1514 -6.3076 -0.0032 13 8 2.6423 -7.6674 -0.0042 14 6 3.5486 -8.6576 -0.0040 15 8 4.7284 -8.3967 -0.0034 16 6 3.0948 -10.0946 -0.0055 17 1 2.4471 -10.2925 -0.8597 18 6 2.3798 -10.4460 1.3241 19 6 3.2848 -11.5677 1.9163 20 1 3.2066 -11.7251 2.9920 21 6 3.0129 -12.8242 1.0358 22 6 3.7278 -12.4727 -0.2938 23 6 4.3180 -11.0598 -0.0056 24 1 5.1540 -10.7547 -0.6349 25 8 4.6043 -11.1574 1.4288 26 1 -0.4850 -0.8401 -0.0004 27 1 3.1252 -3.7309 -0.8909 28 1 3.1238 -3.7317 0.8891 29 1 1.3698 -5.4850 0.8861 30 1 1.3717 -5.4836 -0.8939 31 1 3.7607 -6.1468 -0.8926 32 1 3.7594 -6.1485 0.8874 33 1 2.3521 -9.5819 1.9878 34 1 1.3741 -10.8212 1.1342 35 1 3.4519 -13.7141 1.4868 36 1 1.9431 -12.9609 0.8778 37 1 3.0145 -12.4325 -1.1170 38 1 4.5231 -13.1876 -0.5052 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838420679.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:20 Heat of formation + Delta-G solvation = -163.168476 kcal Electronic energy + Delta-G solvation = -19851.262962 eV Core-core repulsion = 16590.691210 eV Total energy + Delta-G solvation = -3260.571752 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.107 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.35144 -40.89124 -37.88213 -35.11074 -34.74475 -33.52661 -32.04254 -30.71517 -28.25093 -27.03459 -24.77742 -22.93826 -22.73104 -21.81709 -20.97392 -20.30036 -18.87152 -18.20211 -17.95832 -17.23258 -16.68367 -16.40163 -16.08299 -15.77156 -15.58140 -15.13623 -14.85050 -14.59940 -14.25940 -14.03248 -13.62514 -13.23587 -12.95996 -12.82328 -12.73269 -12.62027 -12.54263 -12.47478 -12.13345 -11.97669 -11.94943 -11.73941 -11.63067 -11.43385 -11.15834 -11.12575 -11.00885 -10.46685 -8.96332 -8.90748 -6.31458 1.04864 1.20144 1.47851 1.56959 1.68857 1.79080 2.29733 2.79813 2.97787 3.07201 3.25779 3.44223 3.63830 3.71074 3.75625 3.86011 3.87547 4.01052 4.01978 4.16991 4.20035 4.27974 4.37684 4.47462 4.52421 4.55005 4.81440 4.87179 4.91914 4.98392 5.00698 5.04792 5.13164 5.19502 5.35093 5.58138 5.60673 6.14153 6.59027 7.01169 8.48342 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.053411 B = 0.002419 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.108423 B =11572.720068 C =11792.324657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.017 4.017 3 Si 1.133 2.867 4 H -0.276 1.276 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.609 4.609 8 H 0.066 0.934 9 S -0.228 6.228 10 C -0.072 4.072 11 C -0.085 4.085 12 C 0.080 3.920 13 O -0.355 6.355 14 C 0.465 3.535 15 O -0.537 6.537 16 C -0.112 4.112 17 H 0.152 0.848 18 C -0.133 4.133 19 C 0.050 3.950 20 H 0.145 0.855 21 C -0.143 4.143 22 C -0.140 4.140 23 C 0.074 3.926 24 H 0.125 0.875 25 O -0.405 6.405 26 H 0.264 0.736 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.124 0.876 35 H 0.080 0.920 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.784 -28.055 0.171 28.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.220 4.220 3 Si 0.951 3.049 4 H -0.200 1.200 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.756 4.756 8 H 0.084 0.916 9 S 0.001 5.999 10 C -0.221 4.221 11 C -0.123 4.123 12 C 0.004 3.996 13 O -0.271 6.271 14 C 0.309 3.691 15 O -0.426 6.426 16 C -0.131 4.131 17 H 0.169 0.831 18 C -0.171 4.171 19 C -0.007 4.007 20 H 0.163 0.837 21 C -0.180 4.180 22 C -0.178 4.178 23 C 0.017 3.983 24 H 0.143 0.857 25 O -0.324 6.324 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.142 0.858 35 H 0.099 0.901 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.001 -26.465 0.300 26.768 hybrid contribution 1.616 -0.846 -0.038 1.825 sum 5.617 -27.311 0.262 27.884 Atomic orbital electron populations 1.70924 1.07721 1.30202 1.45647 1.27766 0.96431 1.06174 0.91677 0.82744 0.74021 0.69839 0.78282 1.20044 1.19145 1.19074 1.23911 0.95986 0.92697 1.63038 0.91598 1.84157 1.15535 1.02768 1.97487 1.22931 0.99478 0.95871 1.03864 1.21113 0.97067 0.89529 1.04632 1.22975 0.96503 0.77306 1.02785 1.86471 1.40582 1.16463 1.83607 1.24262 0.84179 0.89507 0.71105 1.90664 1.20043 1.85434 1.46479 1.23074 1.00818 0.85333 1.03875 0.83054 1.23309 1.00924 0.99538 0.93288 1.25065 0.81033 0.93913 1.00663 0.83743 1.23295 1.02641 0.97462 0.94623 1.23258 1.01143 0.94210 0.99163 1.24738 0.95185 0.94798 0.83608 0.85726 1.90146 1.32036 1.89318 1.20926 0.92531 0.91121 0.91295 0.90146 0.89918 0.90802 0.91338 0.91695 0.85818 0.90134 0.87863 0.87901 0.89807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.67 13.67 21.65 0.30 -56.37 16 2 C -0.02 -0.97 5.49 84.86 0.47 -0.51 16 3 Si 1.13 49.74 29.92 68.60 2.05 51.79 16 4 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 6 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 7 C -0.61 -35.49 9.50 67.95 0.65 -34.84 16 8 H 0.07 3.73 7.80 -2.92 -0.02 3.71 16 9 S -0.23 -11.90 20.46 -56.49 -1.16 -13.06 16 10 C -0.07 -2.88 5.67 71.98 0.41 -2.48 16 11 C -0.08 -2.69 5.60 30.59 0.17 -2.52 16 12 C 0.08 2.28 5.47 71.98 0.39 2.67 16 13 O -0.35 -9.43 10.22 -51.46 -0.53 -9.95 16 14 C 0.47 11.87 7.10 71.23 0.51 12.38 16 15 O -0.54 -17.39 15.66 21.95 0.34 -17.05 16 16 C -0.11 -1.81 3.00 -9.88 -0.03 -1.84 16 17 H 0.15 1.48 7.81 -2.38 -0.02 1.46 16 18 C -0.13 -1.76 6.16 32.25 0.20 -1.56 16 19 C 0.05 0.66 5.71 32.55 0.19 0.84 16 20 H 0.15 1.46 8.14 -2.39 -0.02 1.44 16 21 C -0.14 -1.11 6.52 32.26 0.21 -0.90 16 22 C -0.14 -1.27 6.52 32.25 0.21 -1.06 16 23 C 0.07 1.25 4.60 32.54 0.15 1.40 16 24 H 0.13 2.35 7.78 -2.39 -0.02 2.33 16 25 O -0.40 -8.94 11.65 -148.98 -1.74 -10.68 16 26 H 0.26 16.77 7.12 -92.71 -0.66 16.11 16 27 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 28 H 0.07 2.72 8.14 -2.40 -0.02 2.70 16 29 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16 31 H 0.07 2.08 8.13 -2.39 -0.02 2.06 16 32 H 0.07 1.99 8.13 -2.39 -0.02 1.97 16 33 H 0.06 1.11 7.76 -2.39 -0.02 1.09 16 34 H 0.12 0.87 7.81 -2.38 -0.02 0.85 16 35 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.10 0.36 7.81 -2.38 -0.02 0.34 16 37 H 0.10 0.49 7.81 -2.39 -0.02 0.47 16 38 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 Total: -1.00 -75.46 329.20 3.94 -71.52 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: 1.15 Total: 12.21 kcal Atomic # 6 Polarization: -31.93 SS G_CDS: 3.52 Total: -28.41 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: 0.30 Total: -56.37 kcal Atomic # 8 Polarization: -35.76 SS G_CDS: -1.92 Total: -37.68 kcal Atomic # 14 Polarization: 49.74 SS G_CDS: 2.05 Total: 51.79 kcal Atomic # 16 Polarization: -11.90 SS G_CDS: -1.16 Total: -13.06 kcal Total: -75.46 3.94 -71.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838420679.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.648 kcal (2) G-P(sol) polarization free energy of solvation -75.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds