Wall clock time and date at job start Tue Mar 31 2020 05:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 110.66057 * 2 1 4 4 C 1.54695 * 110.89766 * 236.69621 * 2 1 3 5 5 C 1.51679 * 101.90618 * 266.99185 * 4 2 1 6 6 C 1.37307 * 132.03837 * 164.57058 * 5 4 2 7 7 C 1.40049 * 119.83853 * 180.72308 * 6 5 4 8 8 C 1.47213 * 120.29956 * 179.69476 * 7 6 5 9 9 C 1.37335 * 125.07644 * 179.70220 * 8 7 6 10 10 C 1.36006 * 114.88685 * 179.75724 * 9 8 7 11 11 C 1.38581 * 114.50019 * 0.44216 * 10 9 8 12 12 C 1.39625 * 125.23308 * 179.84610 * 11 10 9 13 13 H 1.08000 * 119.99272 * 359.71914 * 12 11 10 14 14 C 1.40047 * 120.00362 * 179.44171 * 12 11 10 15 15 N 1.30887 * 119.99727 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00302 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.46847 * 89.99822 * 16 14 12 18 18 H 1.48493 * 109.47164 * 210.00253 * 16 14 12 19 19 H 1.48502 * 109.46888 * 330.00138 * 16 14 12 20 20 S 1.75807 * 125.06631 * 359.70331 * 8 7 6 21 21 C 1.40001 * 119.40700 * 359.42876 * 7 6 5 22 22 C 1.37455 * 120.17153 * 0.11901 * 21 7 6 23 23 C 1.39199 * 107.00646 * 344.46215 * 5 4 2 24 24 O 1.36109 * 111.15149 * 359.09424 * 23 5 4 25 25 H 1.09001 * 109.47193 * 298.26356 * 1 2 3 26 26 H 1.09001 * 109.47091 * 58.25463 * 1 2 3 27 27 H 1.08994 * 109.47364 * 178.25507 * 1 2 3 28 28 H 1.08995 * 110.94226 * 25.14307 * 4 2 1 29 29 H 1.08994 * 110.94523 * 148.80713 * 4 2 1 30 30 H 1.08002 * 120.08410 * 0.47149 * 6 5 4 31 31 H 1.07999 * 122.55636 * 359.97438 * 9 8 7 32 32 H 1.07999 * 122.75397 * 180.24558 * 10 9 8 33 33 H 0.97000 * 119.99382 * 179.97438 * 15 14 12 34 34 H 1.08007 * 119.91089 * 180.14418 * 21 7 6 35 35 H 1.08007 * 119.76700 * 180.09957 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0817 -0.7935 -1.2078 5 6 2.2661 -2.1775 -0.6152 6 6 2.4579 -3.4076 -1.1942 7 6 2.5859 -4.5452 -0.3875 8 6 2.7852 -5.8700 -0.9979 9 6 2.9278 -7.0458 -0.3027 10 6 3.0961 -8.1514 -1.0767 11 6 3.1049 -7.9027 -2.4400 12 6 3.2648 -8.8699 -3.4342 13 1 3.3997 -9.9064 -3.1624 14 6 3.2446 -8.4967 -4.7839 15 7 3.0762 -7.2412 -5.1133 16 14 3.4578 -9.7908 -6.1141 17 1 2.1282 -10.3282 -6.4995 18 1 4.1072 -9.1785 -7.3008 19 1 4.3075 -10.8945 -5.5992 20 16 2.8759 -6.1828 -2.7255 21 6 2.5283 -4.4106 1.0048 22 6 2.3452 -3.1721 1.5721 23 6 2.2136 -2.0380 0.7688 24 8 2.0390 -0.7360 1.1249 25 1 -0.3633 0.4866 0.9051 26 1 -0.3633 0.5407 -0.8739 27 1 -0.3634 -1.0271 -0.0313 28 1 1.3598 -0.8124 -2.0242 29 1 3.0342 -0.3822 -1.5419 30 1 2.5059 -3.4983 -2.2694 31 1 2.9045 -7.0897 0.7761 32 1 3.2165 -9.1416 -0.6628 33 1 3.0625 -6.9828 -6.0481 34 1 2.6284 -5.2822 1.6348 35 1 2.3034 -3.0755 2.6471 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844226701.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:45 Heat of formation + Delta-G solvation = -9.953807 kcal Electronic energy + Delta-G solvation = -18993.703364 eV Core-core repulsion = 16047.084418 eV Total energy + Delta-G solvation = -2946.618946 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.077 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.70144 -37.23945 -35.71700 -34.01449 -32.82663 -30.75595 -30.21137 -28.40881 -26.54482 -24.76632 -22.53720 -21.85998 -21.24020 -20.53680 -18.37498 -17.58660 -16.74067 -16.13994 -15.60763 -15.47639 -14.82075 -13.99516 -13.79411 -13.66657 -13.24575 -12.78617 -12.68230 -12.49091 -12.26329 -12.15594 -12.04277 -11.81155 -11.78514 -11.30277 -11.26186 -11.08526 -10.64249 -10.54002 -10.48087 -10.31003 -9.88687 -9.66043 -8.96793 -8.37809 -8.13226 -7.17507 -6.94747 -6.74360 -4.56810 1.66460 1.92473 2.60644 2.83760 2.89333 3.04774 3.49495 3.58161 3.61746 3.93994 4.02926 4.55573 4.63626 4.83288 4.91791 4.99844 5.23397 5.36116 5.46337 5.66026 5.78414 5.82526 5.88248 6.03712 6.12513 6.15887 6.21317 6.55409 6.60436 6.68798 6.89948 6.96150 7.12084 7.16567 7.28504 7.44810 7.62214 7.79004 7.89092 8.01834 8.36758 8.39777 9.63744 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.030613 B = 0.003904 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.415697 B = 7170.291200 C = 7921.892291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.078 3.922 3 H 0.107 0.893 4 C -0.105 4.105 5 C -0.153 4.153 6 C -0.107 4.107 7 C 0.051 3.949 8 C -0.378 4.378 9 C -0.039 4.039 10 C -0.341 4.341 11 C 0.033 3.967 12 C -0.368 4.368 13 H 0.098 0.902 14 C 0.047 3.953 15 N -0.770 5.770 16 Si 0.938 3.062 17 H -0.263 1.263 18 H -0.271 1.271 19 H -0.257 1.257 20 S 0.153 5.847 21 C -0.124 4.124 22 C -0.118 4.118 23 C 0.044 3.956 24 O -0.309 6.309 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.118 0.882 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.300 0.700 34 H 0.123 0.877 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.403 8.291 1.937 8.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.022 3.978 3 H 0.124 0.876 4 C -0.142 4.142 5 C -0.154 4.154 6 C -0.126 4.126 7 C 0.049 3.951 8 C -0.493 4.493 9 C -0.068 4.068 10 C -0.364 4.364 11 C -0.089 4.089 12 C -0.404 4.404 13 H 0.116 0.884 14 C -0.175 4.175 15 N -0.397 5.397 16 Si 0.761 3.239 17 H -0.188 1.188 18 H -0.196 1.196 19 H -0.180 1.180 20 S 0.414 5.586 21 C -0.143 4.143 22 C -0.137 4.137 23 C 0.000 4.000 24 O -0.224 6.224 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.136 0.864 31 H 0.115 0.885 32 H 0.121 0.879 33 H 0.113 0.887 34 H 0.141 0.859 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.477 9.480 0.750 9.827 hybrid contribution 0.144 -1.449 0.595 1.573 sum -2.333 8.031 1.345 8.470 Atomic orbital electron populations 1.22221 0.94806 1.03261 1.02424 1.23263 0.94334 0.96013 0.84238 0.87566 1.21800 1.02047 0.92216 0.98126 1.20471 1.06555 0.94638 0.93697 1.20293 1.02831 0.90039 0.99424 1.18047 0.94366 0.91044 0.91655 1.23039 1.31568 0.94031 1.00671 1.19774 0.97755 0.91752 0.97541 1.19705 1.26724 0.97918 0.92062 1.22026 0.95450 0.96002 0.95371 1.19303 1.35673 0.95908 0.89545 0.88449 1.26303 0.93202 0.96984 1.01019 1.68854 1.31836 1.17268 1.21698 0.85765 0.79826 0.79977 0.78363 1.18828 1.19573 1.18044 1.84351 1.73705 1.02262 0.98255 1.20807 1.03324 0.95795 0.94398 1.19979 1.05596 0.89504 0.98585 1.19376 1.03485 0.84413 0.92748 1.86770 1.80857 1.17331 1.37428 0.91746 0.91121 0.91720 0.89524 0.89677 0.86386 0.88516 0.87889 0.88690 0.85932 0.86649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 9.51 37.15 0.35 -1.52 16 2 C 0.08 0.98 4.30 -25.84 -0.11 0.87 16 3 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 4 C -0.10 -1.43 6.66 -26.51 -0.18 -1.61 16 5 C -0.15 -2.74 6.25 -104.12 -0.65 -3.39 16 6 C -0.11 -2.16 9.59 -39.24 -0.38 -2.54 16 7 C 0.05 1.10 5.88 -104.91 -0.62 0.48 16 8 C -0.38 -9.02 6.42 -36.27 -0.23 -9.25 16 9 C -0.04 -0.92 9.65 -40.71 -0.39 -1.31 16 10 C -0.34 -8.43 10.16 -40.26 -0.41 -8.84 16 11 C 0.03 0.85 6.18 -38.94 -0.24 0.61 16 12 C -0.37 -8.99 9.27 -38.39 -0.36 -9.35 16 13 H 0.10 2.23 7.85 -52.49 -0.41 1.82 16 14 C 0.05 1.06 5.50 -17.28 -0.09 0.97 16 15 N -0.77 -17.87 10.62 55.56 0.59 -17.28 16 16 Si 0.94 16.68 29.56 -169.99 -5.03 11.66 16 17 H -0.26 -4.63 7.11 56.52 0.40 -4.23 16 18 H -0.27 -4.70 7.11 56.52 0.40 -4.30 16 19 H -0.26 -4.51 7.11 56.52 0.40 -4.11 16 20 S 0.15 3.78 19.12 -107.50 -2.06 1.72 16 21 C -0.12 -2.39 9.53 -39.21 -0.37 -2.76 16 22 C -0.12 -2.10 10.04 -39.36 -0.40 -2.50 16 23 C 0.04 0.79 6.96 -38.72 -0.27 0.52 16 24 O -0.31 -5.06 10.81 -20.09 -0.22 -5.28 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.84 8.13 -51.93 -0.42 0.41 16 28 H 0.09 1.06 7.93 -51.93 -0.41 0.64 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.12 2.38 7.28 -52.49 -0.38 2.00 16 31 H 0.10 2.04 6.91 -52.49 -0.36 1.67 16 32 H 0.10 2.39 8.06 -52.49 -0.42 1.97 16 33 H 0.30 6.21 8.30 -40.82 -0.34 5.87 16 34 H 0.12 2.19 6.76 -52.48 -0.35 1.83 16 35 H 0.12 1.78 8.06 -52.48 -0.42 1.35 16 LS Contribution 309.16 15.07 4.66 4.66 Total: -1.00 -27.11 309.16 -10.41 -37.52 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -4.02 Total: 6.63 kcal Atomic # 6 Polarization: -35.29 SS G_CDS: -4.34 Total: -39.63 kcal Atomic # 7 Polarization: -17.87 SS G_CDS: 0.59 Total: -17.28 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: -0.22 Total: -5.28 kcal Atomic # 14 Polarization: 16.68 SS G_CDS: -5.03 Total: 11.66 kcal Atomic # 16 Polarization: 3.78 SS G_CDS: -2.06 Total: 1.72 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -27.11 -10.41 -37.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844226701.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.563 kcal (2) G-P(sol) polarization free energy of solvation -27.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds