Wall clock time and date at job start Tue Mar 31 2020 05:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 110.66057 * 2 1 4 4 C 1.54695 * 110.89766 * 236.69621 * 2 1 3 5 5 C 1.51679 * 101.90618 * 266.99185 * 4 2 1 6 6 C 1.37307 * 132.03837 * 164.57058 * 5 4 2 7 7 C 1.40049 * 119.83853 * 180.72308 * 6 5 4 8 8 C 1.47213 * 120.29956 * 179.69476 * 7 6 5 9 9 C 1.37335 * 125.07644 * 179.70220 * 8 7 6 10 10 C 1.36006 * 114.88685 * 179.75724 * 9 8 7 11 11 C 1.38581 * 114.50019 * 0.44216 * 10 9 8 12 12 C 1.39625 * 125.23308 * 179.84610 * 11 10 9 13 13 H 1.08000 * 119.99272 * 359.71914 * 12 11 10 14 14 C 1.40047 * 120.00362 * 179.44171 * 12 11 10 15 15 N 1.30887 * 119.99727 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00302 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.46847 * 89.99822 * 16 14 12 18 18 H 1.48493 * 109.47164 * 210.00253 * 16 14 12 19 19 H 1.48502 * 109.46888 * 330.00138 * 16 14 12 20 20 S 1.75807 * 125.06631 * 359.70331 * 8 7 6 21 21 C 1.40001 * 119.40700 * 359.42876 * 7 6 5 22 22 C 1.37455 * 120.17153 * 0.11901 * 21 7 6 23 23 C 1.39199 * 107.00646 * 344.46215 * 5 4 2 24 24 O 1.36109 * 111.15149 * 359.09424 * 23 5 4 25 25 H 1.09001 * 109.47193 * 298.26356 * 1 2 3 26 26 H 1.09001 * 109.47091 * 58.25463 * 1 2 3 27 27 H 1.08994 * 109.47364 * 178.25507 * 1 2 3 28 28 H 1.08995 * 110.94226 * 25.14307 * 4 2 1 29 29 H 1.08994 * 110.94523 * 148.80713 * 4 2 1 30 30 H 1.08002 * 120.08410 * 0.47149 * 6 5 4 31 31 H 1.07999 * 122.55636 * 359.97438 * 9 8 7 32 32 H 1.07999 * 122.75397 * 180.24558 * 10 9 8 33 33 H 0.97000 * 119.99382 * 179.97438 * 15 14 12 34 34 H 1.08007 * 119.91089 * 180.14418 * 21 7 6 35 35 H 1.08007 * 119.76700 * 180.09957 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0817 -0.7935 -1.2078 5 6 2.2661 -2.1775 -0.6152 6 6 2.4579 -3.4076 -1.1942 7 6 2.5859 -4.5452 -0.3875 8 6 2.7852 -5.8700 -0.9979 9 6 2.9278 -7.0458 -0.3027 10 6 3.0961 -8.1514 -1.0767 11 6 3.1049 -7.9027 -2.4400 12 6 3.2648 -8.8699 -3.4342 13 1 3.3997 -9.9064 -3.1624 14 6 3.2446 -8.4967 -4.7839 15 7 3.0762 -7.2412 -5.1133 16 14 3.4578 -9.7908 -6.1141 17 1 2.1282 -10.3282 -6.4995 18 1 4.1072 -9.1785 -7.3008 19 1 4.3075 -10.8945 -5.5992 20 16 2.8759 -6.1828 -2.7255 21 6 2.5283 -4.4106 1.0048 22 6 2.3452 -3.1721 1.5721 23 6 2.2136 -2.0380 0.7688 24 8 2.0390 -0.7360 1.1249 25 1 -0.3633 0.4866 0.9051 26 1 -0.3633 0.5407 -0.8739 27 1 -0.3634 -1.0271 -0.0313 28 1 1.3598 -0.8124 -2.0242 29 1 3.0342 -0.3822 -1.5419 30 1 2.5059 -3.4983 -2.2694 31 1 2.9045 -7.0897 0.7761 32 1 3.2165 -9.1416 -0.6628 33 1 3.0625 -6.9828 -6.0481 34 1 2.6284 -5.2822 1.6348 35 1 2.3034 -3.0755 2.6471 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844226701.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:45 Heat of formation + Delta-G solvation = -21.974629 kcal Electronic energy + Delta-G solvation = -18994.224625 eV Core-core repulsion = 16047.084418 eV Total energy + Delta-G solvation = -2947.140208 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.077 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.99349 -38.75211 -37.45524 -35.75348 -34.01605 -32.25702 -31.56598 -30.09754 -27.75542 -26.42091 -24.27746 -23.22993 -22.42059 -22.13568 -20.14590 -19.29643 -18.08714 -17.52990 -17.13714 -16.79808 -16.32256 -15.68674 -15.18092 -15.04817 -14.48794 -14.29200 -14.09600 -13.99927 -13.83022 -13.49938 -13.43022 -13.17341 -13.02628 -12.95592 -12.70988 -12.38040 -12.11003 -11.99653 -11.83286 -11.79067 -11.57648 -11.26246 -10.83163 -9.90680 -9.70049 -8.88416 -8.79761 -8.47974 -6.40413 0.06016 0.44918 0.99755 1.36813 1.53263 1.55748 1.63187 2.04551 2.20048 2.22019 2.42739 2.95326 3.13880 3.51789 3.67866 4.00368 4.00584 4.28151 4.29613 4.41700 4.48200 4.63497 4.67486 4.80972 4.82184 4.91597 4.94435 5.00179 5.08795 5.24621 5.28377 5.45335 5.50891 5.51787 5.70188 5.77072 5.87431 6.07587 6.19578 6.37986 6.54780 6.57397 7.96742 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.030613 B = 0.003904 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.415697 B = 7170.291200 C = 7921.892291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.074 3.926 3 H 0.143 0.857 4 C -0.104 4.104 5 C -0.162 4.162 6 C -0.117 4.117 7 C 0.015 3.985 8 C -0.381 4.381 9 C -0.052 4.052 10 C -0.368 4.368 11 C 0.002 3.998 12 C -0.399 4.399 13 H 0.104 0.896 14 C 0.011 3.989 15 N -0.796 5.796 16 Si 1.013 2.987 17 H -0.257 1.257 18 H -0.260 1.260 19 H -0.253 1.253 20 S 0.129 5.871 21 C -0.121 4.121 22 C -0.122 4.122 23 C 0.051 3.949 24 O -0.316 6.316 25 H 0.074 0.926 26 H 0.097 0.903 27 H 0.039 0.961 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.109 0.891 31 H 0.118 0.882 32 H 0.108 0.892 33 H 0.311 0.689 34 H 0.133 0.867 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.747 10.073 1.811 10.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.019 3.981 3 H 0.160 0.840 4 C -0.141 4.141 5 C -0.162 4.162 6 C -0.136 4.136 7 C 0.013 3.987 8 C -0.496 4.496 9 C -0.081 4.081 10 C -0.391 4.391 11 C -0.119 4.119 12 C -0.434 4.434 13 H 0.122 0.878 14 C -0.208 4.208 15 N -0.422 5.422 16 Si 0.831 3.169 17 H -0.181 1.181 18 H -0.184 1.184 19 H -0.176 1.176 20 S 0.390 5.610 21 C -0.141 4.141 22 C -0.141 4.141 23 C 0.007 3.993 24 O -0.232 6.232 25 H 0.093 0.907 26 H 0.116 0.884 27 H 0.059 0.941 28 H 0.120 0.880 29 H 0.118 0.882 30 H 0.127 0.873 31 H 0.136 0.864 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.151 0.849 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.827 11.286 0.640 11.653 hybrid contribution 0.203 -1.734 0.732 1.893 sum -2.624 9.552 1.372 10.001 Atomic orbital electron populations 1.22235 0.93624 1.02283 1.04304 1.23668 0.95347 0.96897 0.82194 0.83996 1.21965 1.03460 0.89624 0.99070 1.20859 1.05312 0.95667 0.94407 1.20310 1.03384 0.90878 0.98994 1.18178 0.97076 0.90498 0.92973 1.23354 1.30775 0.95346 1.00120 1.19976 0.98064 0.91433 0.98623 1.19884 1.28435 0.98608 0.92182 1.22396 0.96586 0.96620 0.96271 1.19660 1.36926 0.96105 0.90695 0.87840 1.27290 0.91883 0.99132 1.02522 1.68894 1.31460 1.18960 1.22900 0.84684 0.79987 0.77004 0.75210 1.18133 1.18425 1.17623 1.84192 1.74571 1.02498 0.99776 1.20950 1.02599 0.97018 0.93522 1.20254 1.04833 0.88929 1.00091 1.19629 1.01571 0.85319 0.92798 1.86774 1.80855 1.16373 1.39188 0.90709 0.88431 0.94127 0.87957 0.88205 0.87333 0.86414 0.87411 0.87609 0.84915 0.83941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.14 9.51 71.98 0.68 -2.45 16 2 C 0.07 1.59 4.30 31.17 0.13 1.73 16 3 H 0.14 2.10 8.14 -2.39 -0.02 2.09 16 4 C -0.10 -2.57 6.66 30.74 0.20 -2.36 16 5 C -0.16 -5.58 6.25 -19.54 -0.12 -5.71 16 6 C -0.12 -4.77 9.59 22.49 0.22 -4.55 16 7 C 0.01 0.65 5.88 -20.05 -0.12 0.53 16 8 C -0.38 -18.82 6.42 24.42 0.16 -18.66 16 9 C -0.05 -2.55 9.65 21.54 0.21 -2.34 16 10 C -0.37 -18.99 10.16 21.83 0.22 -18.77 16 11 C 0.00 0.12 6.18 22.69 0.14 0.26 16 12 C -0.40 -20.08 9.27 23.04 0.21 -19.87 16 13 H 0.10 4.88 7.85 -2.91 -0.02 4.86 16 14 C 0.01 0.50 5.50 85.27 0.47 0.97 16 15 N -0.80 -37.59 10.62 21.85 0.23 -37.36 16 16 Si 1.01 33.69 29.56 68.60 2.03 35.72 16 17 H -0.26 -8.25 7.11 99.48 0.71 -7.54 16 18 H -0.26 -8.14 7.11 99.48 0.71 -7.43 16 19 H -0.25 -8.18 7.11 99.48 0.71 -7.48 16 20 S 0.13 6.65 19.12 -56.49 -1.08 5.57 16 21 C -0.12 -4.63 9.53 22.51 0.21 -4.42 16 22 C -0.12 -4.17 10.04 22.41 0.23 -3.94 16 23 C 0.05 1.75 6.96 22.83 0.16 1.91 16 24 O -0.32 -9.41 10.81 -94.79 -1.02 -10.44 16 25 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.04 0.96 8.13 -2.39 -0.02 0.94 16 28 H 0.10 2.20 7.93 -2.39 -0.02 2.19 16 29 H 0.10 2.18 8.14 -2.39 -0.02 2.17 16 30 H 0.11 4.53 7.28 -2.91 -0.02 4.51 16 31 H 0.12 5.05 6.91 -2.91 -0.02 5.03 16 32 H 0.11 5.24 8.06 -2.91 -0.02 5.22 16 33 H 0.31 12.92 8.30 -92.71 -0.77 12.16 16 34 H 0.13 4.67 6.76 -2.91 -0.02 4.65 16 35 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -60.58 309.16 4.27 -56.31 By element: Atomic # 1 Polarization: 26.77 SS G_CDS: 1.10 Total: 27.87 kcal Atomic # 6 Polarization: -80.69 SS G_CDS: 3.01 Total: -77.68 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.23 Total: -37.36 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: -1.02 Total: -10.44 kcal Atomic # 14 Polarization: 33.69 SS G_CDS: 2.03 Total: 35.72 kcal Atomic # 16 Polarization: 6.65 SS G_CDS: -1.08 Total: 5.57 kcal Total: -60.58 4.27 -56.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844226701.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.337 kcal (2) G-P(sol) polarization free energy of solvation -60.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds