Wall clock time and date at job start Tue Mar 31 2020 06:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31439 * 1 3 3 Si 1.86797 * 119.99616 * 2 1 4 4 H 1.48499 * 109.47033 * 269.99545 * 3 2 1 5 5 H 1.48496 * 109.47502 * 29.99411 * 3 2 1 6 6 H 1.48501 * 109.47063 * 150.00060 * 3 2 1 7 7 C 1.38752 * 120.00251 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00052 * 0.02562 * 7 2 1 9 9 O 1.34922 * 120.00163 * 180.02562 * 7 2 1 10 10 C 1.34308 * 117.00061 * 180.02562 * 9 7 2 11 11 O 1.21208 * 120.00236 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99862 * 179.97438 * 10 9 7 13 13 C 1.52997 * 109.47212 * 179.97438 * 12 10 9 14 14 C 1.50697 * 109.47466 * 179.97438 * 13 12 10 15 15 C 1.34740 * 125.66107 * 89.99613 * 14 13 12 16 16 C 1.40935 * 107.02960 * 179.97438 * 15 14 13 17 17 C 1.35956 * 106.73807 * 0.02562 * 16 15 14 18 18 C 1.47792 * 125.92614 * 179.97438 * 17 16 15 19 19 C 1.39595 * 120.14541 * 359.73118 * 18 17 16 20 20 C 1.37961 * 119.84486 * 179.74098 * 19 18 17 21 21 C 1.38356 * 120.14689 * 0.50719 * 20 19 18 22 22 C 1.38363 * 120.29829 * 359.76750 * 21 20 19 23 23 C 1.37952 * 120.14810 * 359.97438 * 22 21 20 24 24 O 1.34306 * 125.66529 * 269.69373 * 14 13 12 25 25 H 0.96997 * 120.00676 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47060 * 299.99738 * 12 10 9 27 27 H 1.09001 * 109.47380 * 59.99825 * 12 10 9 28 28 H 1.09002 * 109.47153 * 299.99998 * 13 12 10 29 29 H 1.08998 * 109.47533 * 59.99628 * 13 12 10 30 30 H 1.07995 * 126.48482 * 359.96545 * 15 14 13 31 31 H 1.08003 * 126.62874 * 180.02562 * 16 15 14 32 32 H 1.07992 * 120.07359 * 359.96819 * 19 18 17 33 33 H 1.07999 * 119.92159 * 180.24944 * 20 19 18 34 34 H 1.07997 * 119.84880 * 179.73870 * 21 20 19 35 35 H 1.08000 * 119.92458 * 180.02562 * 22 21 20 36 36 H 1.07992 * 120.07825 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4958 2.0464 -1.4001 5 1 1.4457 2.6527 0.6999 6 1 3.5458 1.4403 0.7000 7 6 2.0082 -1.2016 0.0005 8 1 1.4683 -2.1369 0.0005 9 8 3.3574 -1.2016 0.0011 10 6 3.9672 -2.3983 0.0010 11 8 3.3071 -3.4148 0.0010 12 6 5.4722 -2.4771 0.0010 13 6 5.9060 -3.9442 0.0016 14 6 7.4109 -4.0231 0.0010 15 6 8.1959 -4.0635 1.0954 16 6 9.5293 -4.1343 0.6445 17 6 9.4838 -4.1325 -0.7143 18 6 10.6493 -4.1941 -1.6210 19 6 11.9420 -4.2560 -1.0979 20 6 13.0252 -4.3187 -1.9499 21 6 12.8330 -4.3097 -3.3200 22 6 11.5546 -4.2427 -3.8451 23 6 10.4624 -4.1849 -3.0044 24 8 8.1921 -4.0705 -1.0905 25 1 -0.4851 0.8400 -0.0004 26 1 5.8618 -1.9829 -0.8890 27 1 5.8619 -1.9829 0.8910 28 1 5.5164 -4.4380 0.8918 29 1 5.5163 -4.4388 -0.8881 30 1 7.8658 -4.0450 2.1234 31 1 10.4159 -4.1809 1.2596 32 1 12.0936 -4.2585 -0.0286 33 1 14.0257 -4.3707 -1.5465 34 1 13.6846 -4.3547 -3.9826 35 1 11.4115 -4.2365 -4.9156 36 1 9.4651 -4.1331 -3.4154 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844258976.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:41 Heat of formation + Delta-G solvation = -48.680501 kcal Electronic energy + Delta-G solvation = -20548.765717 eV Core-core repulsion = 17157.714585 eV Total energy + Delta-G solvation = -3391.051132 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.65882 -39.28927 -39.17819 -35.72120 -33.87380 -33.32256 -32.30932 -31.70542 -31.20911 -28.29643 -25.88968 -24.22287 -23.28399 -22.38753 -21.26228 -20.28910 -19.65694 -18.00583 -17.94879 -16.90449 -16.21109 -16.12368 -15.56297 -15.20817 -15.12077 -14.74146 -14.09582 -13.88080 -13.77133 -13.48501 -13.15421 -13.03160 -12.91271 -12.54145 -12.31989 -12.13826 -11.72486 -11.61062 -11.34701 -11.27094 -10.90688 -10.47831 -10.36992 -10.18951 -9.71820 -9.65185 -9.30135 -9.20171 -8.68359 -7.95069 -6.37054 -4.13024 0.52230 1.06482 1.90206 2.55792 2.68476 3.13594 3.24514 3.35541 3.40865 3.56951 4.06363 4.24930 4.39868 4.56714 4.62623 4.77270 4.90270 4.91291 5.08044 5.08776 5.15566 5.16770 5.29581 5.46837 5.64501 5.65018 5.70603 5.76815 5.90080 5.97625 6.11978 6.16223 6.20476 6.22970 6.39366 6.44702 6.59909 7.09110 7.73391 8.03475 8.60521 9.01276 9.67590 10.71434 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.027048 B = 0.002802 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.952900 B = 9988.880272 C =10366.351834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.382 4.382 8 H 0.110 0.890 9 O -0.251 6.251 10 C 0.410 3.590 11 O -0.541 6.541 12 C -0.102 4.102 13 C -0.028 4.028 14 C 0.013 3.987 15 C -0.210 4.210 16 C -0.183 4.183 17 C 0.012 3.988 18 C -0.009 4.009 19 C -0.102 4.102 20 C -0.117 4.117 21 C -0.119 4.119 22 C -0.116 4.116 23 C -0.105 4.105 24 O -0.166 6.166 25 H 0.279 0.721 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.092 0.908 30 H 0.153 0.847 31 H 0.149 0.851 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.526 -7.069 -2.732 27.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.138 4.138 3 Si 0.730 3.270 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.458 4.458 8 H 0.127 0.873 9 O -0.160 6.160 10 C 0.256 3.744 11 O -0.437 6.437 12 C -0.140 4.140 13 C -0.065 4.065 14 C -0.037 4.037 15 C -0.229 4.229 16 C -0.202 4.202 17 C -0.038 4.038 18 C -0.009 4.009 19 C -0.120 4.120 20 C -0.135 4.135 21 C -0.137 4.137 22 C -0.134 4.134 23 C -0.123 4.123 24 O -0.063 6.063 25 H 0.090 0.910 26 H 0.114 0.886 27 H 0.116 0.884 28 H 0.124 0.876 29 H 0.110 0.890 30 H 0.171 0.829 31 H 0.167 0.833 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 26.046 -7.182 -3.027 27.187 hybrid contribution 0.224 0.779 0.183 0.831 sum 26.271 -6.403 -2.843 27.189 Atomic orbital electron populations 1.69604 1.05711 1.28407 1.47708 1.24552 0.95014 0.98695 0.95564 0.86219 0.80294 0.81506 0.78941 1.19865 1.20758 1.18390 1.20656 0.76178 0.96970 1.51991 0.87275 1.83518 1.23987 1.31406 1.77092 1.22825 0.90354 0.82669 0.78589 1.90605 1.67128 1.36217 1.49728 1.21100 0.90769 0.96866 1.05266 1.19958 0.83564 0.96852 1.06127 1.22667 0.93709 1.03651 0.83718 1.21554 0.92322 1.09275 0.99753 1.21742 0.98302 1.06957 0.93183 1.20348 0.81996 1.08660 0.92782 1.17795 0.89469 1.01874 0.91748 1.21055 0.90712 0.99983 1.00222 1.21046 0.98631 1.00345 0.93453 1.21275 0.97238 0.99821 0.95386 1.21122 0.92378 0.99901 1.00002 1.21341 0.99793 0.98872 0.92259 1.84016 1.15869 1.71234 1.35169 0.91034 0.88623 0.88436 0.87566 0.88975 0.82940 0.83317 0.85428 0.85484 0.85820 0.85554 0.85280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.04 13.96 55.48 0.77 -25.26 16 2 C 0.07 1.88 5.49 -17.53 -0.10 1.79 16 3 Si 0.91 21.50 28.62 -169.99 -4.86 16.64 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.26 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.38 -11.41 10.10 30.92 0.31 -11.09 16 8 H 0.11 3.58 7.09 -52.49 -0.37 3.21 16 9 O -0.25 -6.63 8.58 -20.70 -0.18 -6.81 16 10 C 0.41 9.41 7.91 36.01 0.28 9.70 16 11 O -0.54 -13.97 15.22 -19.05 -0.29 -14.26 16 12 C -0.10 -1.67 5.79 -27.88 -0.16 -1.83 16 13 C -0.03 -0.40 5.03 -27.89 -0.14 -0.54 16 14 C 0.01 0.18 6.57 -35.55 -0.23 -0.05 16 15 C -0.21 -2.56 10.78 -39.80 -0.43 -2.98 16 16 C -0.18 -2.09 10.26 -39.38 -0.40 -2.49 16 17 C 0.01 0.15 7.03 -36.50 -0.26 -0.11 16 18 C -0.01 -0.10 5.87 -104.98 -0.62 -0.71 16 19 C -0.10 -0.90 9.56 -39.18 -0.37 -1.27 16 20 C -0.12 -0.86 10.03 -39.64 -0.40 -1.26 16 21 C -0.12 -0.88 10.04 -39.49 -0.40 -1.27 16 22 C -0.12 -0.97 10.03 -39.64 -0.40 -1.36 16 23 C -0.10 -1.08 9.72 -39.18 -0.38 -1.46 16 24 O -0.17 -2.36 10.41 4.66 0.05 -2.32 16 25 H 0.28 7.58 8.31 -40.82 -0.34 7.24 16 26 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 27 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 28 H 0.11 1.49 8.10 -51.93 -0.42 1.07 16 29 H 0.09 1.38 8.10 -51.93 -0.42 0.96 16 30 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 31 H 0.15 1.28 7.26 -52.48 -0.38 0.90 16 32 H 0.13 0.89 6.99 -52.49 -0.37 0.52 16 33 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 34 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 35 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.13 1.32 7.91 -52.49 -0.42 0.90 16 LS Contribution 324.61 15.07 4.89 4.89 Total: -1.00 -33.63 324.61 -7.35 -40.99 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -4.05 Total: 1.09 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -3.69 Total: -14.96 kcal Atomic # 7 Polarization: -26.04 SS G_CDS: 0.77 Total: -25.26 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.42 Total: -23.38 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.86 Total: 16.64 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.63 -7.35 -40.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844258976.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.695 kcal (2) G-P(sol) polarization free energy of solvation -33.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds