Wall clock time and date at job start Tue Mar 31 2020 06:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31439 * 1 3 3 Si 1.86797 * 119.99616 * 2 1 4 4 H 1.48499 * 109.47033 * 269.99545 * 3 2 1 5 5 H 1.48496 * 109.47502 * 29.99411 * 3 2 1 6 6 H 1.48501 * 109.47063 * 150.00060 * 3 2 1 7 7 C 1.38752 * 120.00251 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00052 * 0.02562 * 7 2 1 9 9 O 1.34922 * 120.00163 * 180.02562 * 7 2 1 10 10 C 1.34308 * 117.00061 * 180.02562 * 9 7 2 11 11 O 1.21208 * 120.00236 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99862 * 179.97438 * 10 9 7 13 13 C 1.52997 * 109.47212 * 179.97438 * 12 10 9 14 14 C 1.50697 * 109.47466 * 179.97438 * 13 12 10 15 15 C 1.34740 * 125.66107 * 89.99613 * 14 13 12 16 16 C 1.40935 * 107.02960 * 179.97438 * 15 14 13 17 17 C 1.35956 * 106.73807 * 0.02562 * 16 15 14 18 18 C 1.47792 * 125.92614 * 179.97438 * 17 16 15 19 19 C 1.39595 * 120.14541 * 359.73118 * 18 17 16 20 20 C 1.37961 * 119.84486 * 179.74098 * 19 18 17 21 21 C 1.38356 * 120.14689 * 0.50719 * 20 19 18 22 22 C 1.38363 * 120.29829 * 359.76750 * 21 20 19 23 23 C 1.37952 * 120.14810 * 359.97438 * 22 21 20 24 24 O 1.34306 * 125.66529 * 269.69373 * 14 13 12 25 25 H 0.96997 * 120.00676 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47060 * 299.99738 * 12 10 9 27 27 H 1.09001 * 109.47380 * 59.99825 * 12 10 9 28 28 H 1.09002 * 109.47153 * 299.99998 * 13 12 10 29 29 H 1.08998 * 109.47533 * 59.99628 * 13 12 10 30 30 H 1.07995 * 126.48482 * 359.96545 * 15 14 13 31 31 H 1.08003 * 126.62874 * 180.02562 * 16 15 14 32 32 H 1.07992 * 120.07359 * 359.96819 * 19 18 17 33 33 H 1.07999 * 119.92159 * 180.24944 * 20 19 18 34 34 H 1.07997 * 119.84880 * 179.73870 * 21 20 19 35 35 H 1.08000 * 119.92458 * 180.02562 * 22 21 20 36 36 H 1.07992 * 120.07825 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4958 2.0464 -1.4001 5 1 1.4457 2.6527 0.6999 6 1 3.5458 1.4403 0.7000 7 6 2.0082 -1.2016 0.0005 8 1 1.4683 -2.1369 0.0005 9 8 3.3574 -1.2016 0.0011 10 6 3.9672 -2.3983 0.0010 11 8 3.3071 -3.4148 0.0010 12 6 5.4722 -2.4771 0.0010 13 6 5.9060 -3.9442 0.0016 14 6 7.4109 -4.0231 0.0010 15 6 8.1959 -4.0635 1.0954 16 6 9.5293 -4.1343 0.6445 17 6 9.4838 -4.1325 -0.7143 18 6 10.6493 -4.1941 -1.6210 19 6 11.9420 -4.2560 -1.0979 20 6 13.0252 -4.3187 -1.9499 21 6 12.8330 -4.3097 -3.3200 22 6 11.5546 -4.2427 -3.8451 23 6 10.4624 -4.1849 -3.0044 24 8 8.1921 -4.0705 -1.0905 25 1 -0.4851 0.8400 -0.0004 26 1 5.8618 -1.9829 -0.8890 27 1 5.8619 -1.9829 0.8910 28 1 5.5164 -4.4380 0.8918 29 1 5.5163 -4.4388 -0.8881 30 1 7.8658 -4.0450 2.1234 31 1 10.4159 -4.1809 1.2596 32 1 12.0936 -4.2585 -0.0286 33 1 14.0257 -4.3707 -1.5465 34 1 13.6846 -4.3547 -3.9826 35 1 11.4115 -4.2365 -4.9156 36 1 9.4651 -4.1331 -3.4154 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844258976.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:40 Heat of formation + Delta-G solvation = -67.168042 kcal Electronic energy + Delta-G solvation = -20549.567397 eV Core-core repulsion = 17157.714585 eV Total energy + Delta-G solvation = -3391.852812 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.60611 -41.19778 -39.87212 -37.65917 -35.18936 -34.50522 -34.19240 -32.58621 -31.84569 -29.47460 -27.65158 -25.60338 -24.00182 -23.25241 -22.13385 -21.58226 -21.05815 -20.16108 -18.92990 -18.47068 -17.28168 -17.18275 -16.94910 -16.73286 -16.07055 -15.84211 -15.73793 -15.09799 -14.79151 -14.48638 -14.39051 -14.13003 -13.84263 -13.79229 -13.74388 -13.43431 -13.25210 -13.01028 -12.40854 -12.28348 -12.25145 -12.13114 -11.94594 -11.86841 -11.18672 -11.03803 -10.84659 -10.44881 -9.92687 -8.80832 -8.55653 -6.42821 -0.22643 0.44042 1.00571 1.28113 1.33949 1.51939 1.57132 1.69581 1.75640 2.26737 2.46300 2.90265 2.90768 3.50657 3.78448 3.82127 3.94608 4.03470 4.07572 4.12879 4.27250 4.36324 4.50843 4.52741 4.59013 4.69387 4.75804 4.87767 4.93004 5.00309 5.09697 5.11882 5.43531 5.48185 5.50171 5.56268 5.60732 5.88131 6.00279 6.15751 6.52007 6.81426 7.56919 8.57323 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.027048 B = 0.002802 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.952900 B = 9988.880272 C =10366.351834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.014 3.986 3 Si 0.984 3.016 4 H -0.261 1.261 5 H -0.265 1.265 6 H -0.249 1.249 7 C -0.410 4.410 8 H 0.058 0.942 9 O -0.259 6.259 10 C 0.411 3.589 11 O -0.574 6.574 12 C -0.088 4.088 13 C -0.019 4.019 14 C -0.013 4.013 15 C -0.200 4.200 16 C -0.186 4.186 17 C 0.004 3.996 18 C -0.038 4.038 19 C -0.104 4.104 20 C -0.117 4.117 21 C -0.116 4.116 22 C -0.123 4.123 23 C -0.126 4.126 24 O -0.187 6.187 25 H 0.289 0.711 26 H 0.114 0.886 27 H 0.127 0.873 28 H 0.108 0.892 29 H 0.077 0.923 30 H 0.173 0.827 31 H 0.178 0.822 32 H 0.146 0.854 33 H 0.157 0.843 34 H 0.152 0.848 35 H 0.143 0.857 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.547 -5.831 -2.359 31.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.185 4.185 3 Si 0.804 3.196 4 H -0.186 1.186 5 H -0.190 1.190 6 H -0.172 1.172 7 C -0.485 4.485 8 H 0.076 0.924 9 O -0.168 6.168 10 C 0.259 3.741 11 O -0.470 6.470 12 C -0.125 4.125 13 C -0.056 4.056 14 C -0.062 4.062 15 C -0.219 4.219 16 C -0.205 4.205 17 C -0.045 4.045 18 C -0.038 4.038 19 C -0.122 4.122 20 C -0.134 4.134 21 C -0.134 4.134 22 C -0.141 4.141 23 C -0.144 4.144 24 O -0.085 6.085 25 H 0.099 0.901 26 H 0.132 0.868 27 H 0.145 0.855 28 H 0.127 0.873 29 H 0.096 0.904 30 H 0.190 0.810 31 H 0.195 0.805 32 H 0.163 0.837 33 H 0.175 0.825 34 H 0.170 0.830 35 H 0.161 0.839 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 30.064 -5.974 -2.652 30.766 hybrid contribution -0.918 0.213 0.004 0.942 sum 29.146 -5.761 -2.648 29.828 Atomic orbital electron populations 1.69703 1.07615 1.30251 1.48190 1.25599 0.95996 1.02808 0.94143 0.85064 0.79076 0.75719 0.79782 1.18564 1.18977 1.17202 1.20333 0.77817 0.95791 1.54608 0.92400 1.83531 1.21989 1.32971 1.78335 1.24290 0.92879 0.81295 0.75656 1.90591 1.68691 1.37209 1.50531 1.21240 0.85052 0.98809 1.07442 1.19770 0.84764 0.95402 1.05649 1.22424 0.93070 1.06464 0.84287 1.21875 0.92483 1.07356 1.00193 1.22089 0.98994 1.06514 0.92904 1.20891 0.81717 1.08021 0.93911 1.18016 0.89930 1.03991 0.91861 1.21342 0.90066 0.99270 1.01507 1.21458 0.99602 0.98969 0.93408 1.21682 0.97565 0.98059 0.96066 1.21383 0.92415 0.99568 1.00759 1.21421 1.00072 1.00208 0.92727 1.83984 1.16843 1.71849 1.35826 0.90069 0.86822 0.85478 0.87329 0.90403 0.80987 0.80481 0.83669 0.82504 0.83019 0.83916 0.86552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.96 13.96 21.62 0.30 -55.66 16 2 C 0.01 0.84 5.49 84.87 0.47 1.31 16 3 Si 0.98 43.82 28.62 68.60 1.96 45.78 16 4 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 5 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 6 H -0.25 -10.54 7.11 99.48 0.71 -9.83 16 7 C -0.41 -25.41 10.10 67.94 0.69 -24.73 16 8 H 0.06 4.08 7.09 -2.91 -0.02 4.06 16 9 O -0.26 -13.82 8.58 14.88 0.13 -13.69 16 10 C 0.41 19.19 7.91 71.24 0.56 19.75 16 11 O -0.57 -30.87 15.22 20.78 0.32 -30.56 16 12 C -0.09 -2.78 5.79 29.85 0.17 -2.61 16 13 C -0.02 -0.54 5.03 29.85 0.15 -0.39 16 14 C -0.01 -0.33 6.57 24.88 0.16 -0.17 16 15 C -0.20 -4.48 10.78 22.13 0.24 -4.24 16 16 C -0.19 -3.86 10.26 22.40 0.23 -3.63 16 17 C 0.00 0.10 7.03 24.27 0.17 0.27 16 18 C -0.04 -0.80 5.87 -20.10 -0.12 -0.92 16 19 C -0.10 -1.58 9.56 22.53 0.22 -1.37 16 20 C -0.12 -1.34 10.03 22.23 0.22 -1.12 16 21 C -0.12 -1.36 10.04 22.33 0.22 -1.13 16 22 C -0.12 -1.87 10.03 22.23 0.22 -1.65 16 23 C -0.13 -2.59 9.72 22.53 0.22 -2.37 16 24 O -0.19 -5.34 10.41 -6.25 -0.07 -5.41 16 25 H 0.29 15.87 8.31 -92.71 -0.77 15.10 16 26 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 27 H 0.13 3.34 8.14 -2.39 -0.02 3.32 16 28 H 0.11 3.03 8.10 -2.39 -0.02 3.01 16 29 H 0.08 2.43 8.10 -2.39 -0.02 2.41 16 30 H 0.17 3.04 8.06 -2.91 -0.02 3.02 16 31 H 0.18 2.48 7.26 -2.91 -0.02 2.46 16 32 H 0.15 1.57 6.99 -2.91 -0.02 1.55 16 33 H 0.16 0.84 8.06 -2.91 -0.02 0.81 16 34 H 0.15 0.90 8.06 -2.91 -0.02 0.87 16 35 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 36 H 0.12 2.54 7.91 -2.91 -0.02 2.51 16 Total: -1.00 -76.68 324.61 7.57 -69.11 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 1.09 Total: 13.43 kcal Atomic # 6 Polarization: -26.83 SS G_CDS: 3.83 Total: -23.00 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: 0.30 Total: -55.66 kcal Atomic # 8 Polarization: -50.04 SS G_CDS: 0.38 Total: -49.66 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.96 Total: 45.78 kcal Total: -76.68 7.57 -69.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844258976.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.943 kcal (2) G-P(sol) polarization free energy of solvation -76.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds