Wall clock time and date at job start Tue Mar 31 2020 05:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99969 * 2 1 4 4 H 1.48503 * 109.47028 * 270.00467 * 3 2 1 5 5 H 1.48500 * 109.47272 * 30.00856 * 3 2 1 6 6 H 1.48503 * 109.46813 * 150.00824 * 3 2 1 7 7 C 1.37883 * 119.99790 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99370 * 183.26694 * 7 2 1 9 9 C 1.50697 * 120.00190 * 3.26374 * 7 2 1 10 10 C 1.53000 * 115.54883 * 324.27906 * 9 7 2 11 11 O 1.45202 * 109.47112 * 302.91896 * 10 9 7 12 12 C 1.34816 * 117.00065 * 175.14970 * 11 10 9 13 13 O 1.21549 * 119.99873 * 5.11528 * 12 11 10 14 14 C 1.47009 * 119.99492 * 185.12301 * 12 11 10 15 15 C 1.38493 * 126.88973 * 179.39461 * 14 12 11 16 16 C 1.39637 * 105.35563 * 179.97438 * 15 14 12 17 17 N 1.30881 * 107.87746 * 359.97438 * 16 15 14 18 18 N 1.28442 * 110.94646 * 0.02562 * 17 16 15 19 19 C 1.46499 * 125.19604 * 180.26353 * 18 17 16 20 20 F 1.39897 * 109.46986 * 9.72622 * 19 18 17 21 21 F 1.39900 * 109.47234 * 129.72687 * 19 18 17 22 22 C 1.52998 * 117.49814 * 109.94212 * 9 7 2 23 23 C 1.52996 * 117.49965 * 178.60463 * 9 7 2 24 24 H 0.96998 * 119.99755 * 4.99385 * 1 2 3 25 25 H 1.09003 * 109.47212 * 182.92251 * 10 9 7 26 26 H 1.09002 * 109.47548 * 62.91951 * 10 9 7 27 27 H 1.07996 * 127.31789 * 359.97438 * 15 14 12 28 28 H 1.07999 * 126.06339 * 179.97438 * 16 15 14 29 29 H 1.09000 * 109.46976 * 249.73205 * 19 18 17 30 30 H 1.09004 * 117.50086 * 215.00502 * 22 9 7 31 31 H 1.09007 * 117.50189 * 0.02582 * 22 9 7 32 32 H 1.09001 * 117.49614 * 359.97438 * 23 9 7 33 33 H 1.08998 * 117.50091 * 144.97522 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0832 -1.1948 0.0528 9 6 1.2529 -2.4981 -0.0754 10 6 -0.0857 -2.5316 0.6648 11 8 0.1255 -2.1991 2.0623 12 6 -0.9719 -2.0853 2.8371 13 8 -2.0674 -2.3497 2.3816 14 6 -0.8436 -1.6413 4.2326 15 6 -1.8691 -1.4643 5.1464 16 6 -1.2475 -1.0383 6.3219 17 7 0.0403 -0.9770 6.0961 18 7 0.3116 -1.3214 4.8888 19 6 1.6549 -1.3702 4.3062 20 9 2.6077 -1.2018 5.3166 21 9 1.8487 -2.6082 3.6841 22 6 1.3640 -3.3041 -1.3711 23 6 2.0761 -3.7874 -0.1052 24 1 -0.4850 0.8369 -0.0731 25 1 -0.5174 -3.5297 0.5900 26 1 -0.7664 -1.8069 0.2178 27 1 -2.9251 -1.6221 4.9841 28 1 -1.7416 -0.8014 7.2526 29 1 1.7609 -0.5731 3.5704 30 1 0.4834 -3.8583 -1.6962 31 1 1.9811 -2.8914 -2.1693 32 1 3.1615 -3.6923 -0.0711 33 1 1.6643 -4.6593 0.4029 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849837406.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:30 Heat of formation + Delta-G solvation = -62.247170 kcal Electronic energy + Delta-G solvation = -23726.147506 eV Core-core repulsion = 19812.571301 eV Total energy + Delta-G solvation = -3913.576206 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.04715 -47.12710 -42.42947 -39.35121 -36.83164 -35.17249 -32.73082 -32.32807 -30.99981 -26.84737 -26.08681 -25.56090 -23.26812 -21.63595 -21.32148 -20.30974 -19.28873 -18.44516 -17.92615 -17.08504 -16.76117 -16.23847 -15.78369 -15.58995 -14.99833 -14.57111 -14.47869 -13.93656 -13.82682 -13.52159 -13.36685 -13.12496 -13.09325 -12.18393 -12.09380 -11.97783 -11.68386 -11.18335 -11.00094 -10.86948 -10.61707 -10.45282 -10.19545 -9.72120 -9.53074 -9.46677 -9.13941 -9.08513 -8.90458 -8.36118 -6.13748 -4.27615 1.16090 1.89611 2.55468 3.12623 3.15932 3.24050 3.25118 3.41052 3.78853 4.16448 4.21175 4.74382 4.75286 4.90376 5.01865 5.31880 5.41656 5.56069 5.79371 5.96427 6.13927 6.30659 6.40031 6.44920 6.53978 6.58421 6.69220 6.86904 7.16558 7.30316 7.38147 7.79010 7.86000 8.20097 8.40107 8.71816 9.34719 10.80705 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.015532 B = 0.007529 C = 0.006863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.328957 B = 3718.189803 C = 4079.039030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.069 3.931 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.477 4.477 8 H 0.064 0.936 9 C 0.043 3.957 10 C 0.117 3.883 11 O -0.320 6.320 12 C 0.529 3.471 13 O -0.501 6.501 14 C 0.009 3.991 15 C -0.152 4.152 16 C 0.008 3.992 17 N -0.263 5.263 18 N -0.331 5.331 19 C 0.505 3.495 20 F -0.172 7.172 21 F -0.153 7.153 22 C -0.193 4.193 23 C -0.205 4.205 24 H 0.264 0.736 25 H 0.025 0.975 26 H 0.127 0.873 27 H 0.171 0.829 28 H 0.195 0.805 29 H 0.169 0.831 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.916 -1.578 8.447 8.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.133 4.133 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.514 4.514 8 H 0.082 0.918 9 C 0.043 3.957 10 C 0.044 3.956 11 O -0.234 6.234 12 C 0.371 3.629 13 O -0.389 6.389 14 C -0.114 4.114 15 C -0.180 4.180 16 C -0.170 4.170 17 N -0.094 5.094 18 N -0.130 5.130 19 C 0.373 3.627 20 F -0.154 7.154 21 F -0.134 7.134 22 C -0.231 4.231 23 C -0.243 4.243 24 H 0.075 0.925 25 H 0.043 0.957 26 H 0.144 0.856 27 H 0.189 0.811 28 H 0.211 0.789 29 H 0.185 0.815 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.131 -1.329 8.708 8.810 hybrid contribution -0.309 0.455 -0.523 0.759 sum -0.440 -0.874 8.186 8.244 Atomic orbital electron populations 1.69701 1.05844 1.26929 1.49859 1.24984 0.94871 0.99154 0.94286 0.86602 0.79847 0.83090 0.78720 1.20265 1.21026 1.19583 1.20526 0.92686 0.88409 1.49818 0.91805 1.18920 0.92390 0.90654 0.93743 1.23126 0.99728 0.98127 0.74595 1.86525 1.32970 1.79072 1.24816 1.19506 0.83956 0.75257 0.84212 1.90822 1.27811 1.46783 1.73505 1.21023 0.86606 1.10015 0.93755 1.22282 0.99812 1.04194 0.91670 1.23723 0.88985 1.04317 1.00021 1.73199 1.19613 1.18028 0.98559 1.47284 1.07572 1.49366 1.08801 1.21667 0.71675 0.87056 0.82313 1.93091 1.63235 1.95678 1.63352 1.93218 1.93512 1.45177 1.81528 1.22992 1.01626 1.05937 0.92545 1.22936 0.98579 0.99917 1.02828 0.92528 0.95714 0.85568 0.81119 0.78859 0.81454 0.91354 0.89727 0.90270 0.91196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.85 10.27 55.43 0.57 -22.28 16 2 C 0.07 1.72 5.39 -17.82 -0.10 1.63 16 3 Si 0.89 19.47 29.54 -169.99 -5.02 14.45 16 4 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.48 -11.93 8.84 -34.44 -0.30 -12.23 16 8 H 0.06 1.59 7.82 -52.49 -0.41 1.18 16 9 C 0.04 1.01 2.18 -155.66 -0.34 0.68 16 10 C 0.12 2.73 4.42 37.16 0.16 2.90 16 11 O -0.32 -7.13 6.85 -40.81 -0.28 -7.41 16 12 C 0.53 11.17 7.85 34.28 0.27 11.44 16 13 O -0.50 -11.36 16.70 -19.30 -0.32 -11.68 16 14 C 0.01 0.17 6.85 -82.07 -0.56 -0.39 16 15 C -0.15 -2.23 10.85 -38.97 -0.42 -2.65 16 16 C 0.01 0.11 12.03 -17.43 -0.21 -0.10 16 17 N -0.26 -4.19 11.51 30.58 0.35 -3.84 16 18 N -0.33 -5.71 3.71 -62.40 -0.23 -5.95 16 19 C 0.50 8.46 5.75 59.85 0.34 8.81 16 20 F -0.17 -2.75 17.09 2.25 0.04 -2.71 16 21 F -0.15 -2.83 15.03 2.25 0.03 -2.80 16 22 C -0.19 -4.07 9.96 -26.69 -0.27 -4.34 16 23 C -0.21 -4.25 9.94 -26.69 -0.27 -4.52 16 24 H 0.26 6.64 8.32 -40.82 -0.34 6.30 16 25 H 0.02 0.55 8.11 -51.93 -0.42 0.13 16 26 H 0.13 3.27 5.69 -51.93 -0.30 2.97 16 27 H 0.17 2.12 8.06 -52.49 -0.42 1.70 16 28 H 0.19 1.64 8.06 -52.49 -0.42 1.22 16 29 H 0.17 2.69 8.14 -51.93 -0.42 2.26 16 30 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.08 1.76 8.14 -51.92 -0.42 1.34 16 32 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 33 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 302.82 15.07 4.56 4.56 Total: -1.00 -28.08 302.82 -5.21 -33.28 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -3.22 Total: 3.16 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -1.69 Total: 1.21 kcal Atomic # 7 Polarization: -32.76 SS G_CDS: 0.69 Total: -32.07 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.60 Total: -19.09 kcal Atomic # 9 Polarization: -5.58 SS G_CDS: 0.07 Total: -5.51 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.45 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.08 -5.21 -33.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849837406.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.963 kcal (2) G-P(sol) polarization free energy of solvation -28.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds