Wall clock time and date at job start Tue Mar 31 2020 05:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99969 * 2 1 4 4 H 1.48503 * 109.47028 * 270.00467 * 3 2 1 5 5 H 1.48500 * 109.47272 * 30.00856 * 3 2 1 6 6 H 1.48503 * 109.46813 * 150.00824 * 3 2 1 7 7 C 1.37883 * 119.99790 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99370 * 183.26694 * 7 2 1 9 9 C 1.50697 * 120.00190 * 3.26374 * 7 2 1 10 10 C 1.53000 * 115.54883 * 324.27906 * 9 7 2 11 11 O 1.45202 * 109.47112 * 302.91896 * 10 9 7 12 12 C 1.34816 * 117.00065 * 175.14970 * 11 10 9 13 13 O 1.21549 * 119.99873 * 5.11528 * 12 11 10 14 14 C 1.47009 * 119.99492 * 185.12301 * 12 11 10 15 15 C 1.38493 * 126.88973 * 179.39461 * 14 12 11 16 16 C 1.39637 * 105.35563 * 179.97438 * 15 14 12 17 17 N 1.30881 * 107.87746 * 359.97438 * 16 15 14 18 18 N 1.28442 * 110.94646 * 0.02562 * 17 16 15 19 19 C 1.46499 * 125.19604 * 180.26353 * 18 17 16 20 20 F 1.39897 * 109.46986 * 9.72622 * 19 18 17 21 21 F 1.39900 * 109.47234 * 129.72687 * 19 18 17 22 22 C 1.52998 * 117.49814 * 109.94212 * 9 7 2 23 23 C 1.52996 * 117.49965 * 178.60463 * 9 7 2 24 24 H 0.96998 * 119.99755 * 4.99385 * 1 2 3 25 25 H 1.09003 * 109.47212 * 182.92251 * 10 9 7 26 26 H 1.09002 * 109.47548 * 62.91951 * 10 9 7 27 27 H 1.07996 * 127.31789 * 359.97438 * 15 14 12 28 28 H 1.07999 * 126.06339 * 179.97438 * 16 15 14 29 29 H 1.09000 * 109.46976 * 249.73205 * 19 18 17 30 30 H 1.09004 * 117.50086 * 215.00502 * 22 9 7 31 31 H 1.09007 * 117.50189 * 0.02582 * 22 9 7 32 32 H 1.09001 * 117.49614 * 359.97438 * 23 9 7 33 33 H 1.08998 * 117.50091 * 144.97522 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0832 -1.1948 0.0528 9 6 1.2529 -2.4981 -0.0754 10 6 -0.0857 -2.5316 0.6648 11 8 0.1255 -2.1991 2.0623 12 6 -0.9719 -2.0853 2.8371 13 8 -2.0674 -2.3497 2.3816 14 6 -0.8436 -1.6413 4.2326 15 6 -1.8691 -1.4643 5.1464 16 6 -1.2475 -1.0383 6.3219 17 7 0.0403 -0.9770 6.0961 18 7 0.3116 -1.3214 4.8888 19 6 1.6549 -1.3702 4.3062 20 9 2.6077 -1.2018 5.3166 21 9 1.8487 -2.6082 3.6841 22 6 1.3640 -3.3041 -1.3711 23 6 2.0761 -3.7874 -0.1052 24 1 -0.4850 0.8369 -0.0731 25 1 -0.5174 -3.5297 0.5900 26 1 -0.7664 -1.8069 0.2178 27 1 -2.9251 -1.6221 4.9841 28 1 -1.7416 -0.8014 7.2526 29 1 1.7609 -0.5731 3.5704 30 1 0.4834 -3.8583 -1.6962 31 1 1.9811 -2.8914 -2.1693 32 1 3.1615 -3.6923 -0.0711 33 1 1.6643 -4.6593 0.4029 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849837406.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:29 Heat of formation + Delta-G solvation = -77.037279 kcal Electronic energy + Delta-G solvation = -23726.788854 eV Core-core repulsion = 19812.571301 eV Total energy + Delta-G solvation = -3914.217553 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.37701 -48.47086 -43.66018 -41.01792 -38.56778 -36.87573 -34.21678 -33.95405 -32.30903 -28.55006 -27.50998 -27.31829 -24.76098 -22.99266 -22.83090 -21.68771 -21.10380 -19.92975 -19.24765 -18.59995 -18.35361 -17.75565 -17.39662 -17.13498 -16.64608 -16.11662 -15.81682 -15.46651 -15.23192 -14.96908 -14.75164 -14.52668 -14.40142 -13.85800 -13.84025 -13.50361 -13.27293 -12.96836 -12.71346 -12.38914 -12.23752 -12.13292 -11.80651 -11.45929 -11.32253 -10.90796 -10.71617 -10.66970 -10.41589 -10.17231 -8.02029 -6.21511 -0.21189 0.63196 1.38928 1.39951 1.45114 1.52197 1.63630 1.89976 2.39459 2.48392 2.91163 3.00207 3.37749 3.43185 3.64566 3.93308 4.07882 4.23941 4.27632 4.40714 4.60084 4.72191 4.77987 4.92319 4.93742 5.09077 5.18978 5.41925 5.44710 5.51805 5.63687 5.86353 6.32957 6.60413 6.75343 6.83867 7.42383 8.90076 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.015532 B = 0.007529 C = 0.006863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.328957 B = 3718.189803 C = 4079.039030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.033 3.967 3 Si 0.943 3.057 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.488 4.488 8 H 0.059 0.941 9 C 0.009 3.991 10 C 0.125 3.875 11 O -0.325 6.325 12 C 0.526 3.474 13 O -0.527 6.527 14 C -0.028 4.028 15 C -0.131 4.131 16 C 0.030 3.970 17 N -0.277 5.277 18 N -0.341 5.341 19 C 0.506 3.494 20 F -0.168 7.168 21 F -0.167 7.167 22 C -0.185 4.185 23 C -0.188 4.188 24 H 0.260 0.740 25 H 0.028 0.972 26 H 0.100 0.900 27 H 0.194 0.806 28 H 0.245 0.755 29 H 0.170 0.830 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.023 -1.345 9.906 10.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.167 4.167 3 Si 0.769 3.231 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.526 4.526 8 H 0.077 0.923 9 C 0.009 3.991 10 C 0.052 3.948 11 O -0.239 6.239 12 C 0.369 3.631 13 O -0.417 6.417 14 C -0.150 4.150 15 C -0.159 4.159 16 C -0.149 4.149 17 N -0.108 5.108 18 N -0.140 5.140 19 C 0.374 3.626 20 F -0.149 7.149 21 F -0.148 7.148 22 C -0.223 4.223 23 C -0.225 4.225 24 H 0.070 0.930 25 H 0.046 0.954 26 H 0.118 0.882 27 H 0.212 0.788 28 H 0.261 0.739 29 H 0.186 0.814 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.217 -1.105 10.169 10.231 hybrid contribution -0.330 0.360 -0.887 1.013 sum -0.547 -0.745 9.282 9.328 Atomic orbital electron populations 1.69864 1.06815 1.27058 1.50702 1.25549 0.95430 1.01571 0.94157 0.85775 0.79041 0.79851 0.78463 1.20355 1.21244 1.18749 1.20706 0.92564 0.89494 1.49822 0.92303 1.19051 0.93028 0.91325 0.95710 1.22856 0.99329 0.97324 0.75313 1.86533 1.33716 1.79303 1.24338 1.19989 0.83324 0.74499 0.85242 1.90789 1.28354 1.48169 1.74350 1.20960 0.88226 1.12963 0.92895 1.22763 1.00305 1.01636 0.91202 1.24564 0.87703 1.01657 1.00965 1.73226 1.21315 1.18308 0.97939 1.47222 1.07163 1.50455 1.09210 1.21638 0.72032 0.86469 0.82469 1.93092 1.63088 1.95598 1.63148 1.93182 1.93692 1.46042 1.81908 1.23011 1.02107 1.05069 0.92122 1.22934 0.98656 0.98785 1.02112 0.93005 0.95402 0.88244 0.78848 0.73873 0.81385 0.90046 0.89643 0.89720 0.89945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.56 10.27 21.45 0.22 -47.34 16 2 C 0.03 1.63 5.39 84.66 0.46 2.09 16 3 Si 0.94 40.00 29.54 68.60 2.03 42.02 16 4 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 5 H -0.29 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 7 C -0.49 -24.53 8.84 25.60 0.23 -24.30 16 8 H 0.06 2.94 7.82 -2.91 -0.02 2.91 16 9 C 0.01 0.43 2.18 -52.93 -0.12 0.32 16 10 C 0.12 5.94 4.42 71.98 0.32 6.26 16 11 O -0.32 -14.74 6.85 -57.28 -0.39 -15.13 16 12 C 0.53 22.45 7.85 70.12 0.55 23.00 16 13 O -0.53 -24.21 16.70 19.68 0.33 -23.89 16 14 C -0.03 -1.00 6.85 40.76 0.28 -0.72 16 15 C -0.13 -3.50 10.85 22.67 0.25 -3.25 16 16 C 0.03 0.66 12.03 85.17 1.02 1.68 16 17 N -0.28 -8.20 11.51 -57.15 -0.66 -8.86 16 18 N -0.34 -11.46 3.71 -351.35 -1.30 -12.76 16 19 C 0.51 16.93 5.75 127.77 0.73 17.67 16 20 F -0.17 -5.26 17.09 44.97 0.77 -4.49 16 21 F -0.17 -6.24 15.03 44.97 0.68 -5.56 16 22 C -0.19 -7.66 9.96 30.62 0.30 -7.36 16 23 C -0.19 -7.58 9.94 30.62 0.30 -7.28 16 24 H 0.26 13.32 8.32 -92.71 -0.77 12.55 16 25 H 0.03 1.27 8.11 -2.39 -0.02 1.25 16 26 H 0.10 5.31 5.69 -2.39 -0.01 5.29 16 27 H 0.19 4.18 8.06 -2.91 -0.02 4.16 16 28 H 0.25 2.72 8.06 -2.91 -0.02 2.69 16 29 H 0.17 5.50 8.14 -2.39 -0.02 5.48 16 30 H 0.08 3.12 8.14 -2.38 -0.02 3.10 16 31 H 0.09 3.48 8.14 -2.38 -0.02 3.46 16 32 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 33 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -60.30 302.82 7.15 -53.15 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 1.15 Total: 14.75 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 4.33 Total: 8.10 kcal Atomic # 7 Polarization: -67.21 SS G_CDS: -1.74 Total: -68.95 kcal Atomic # 8 Polarization: -38.96 SS G_CDS: -0.06 Total: -39.02 kcal Atomic # 9 Polarization: -11.50 SS G_CDS: 1.44 Total: -10.06 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.02 kcal Total: -60.30 7.15 -53.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849837406.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.885 kcal (2) G-P(sol) polarization free energy of solvation -60.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds