Wall clock time and date at job start Tue Mar 31 2020 06:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28432 * 125.19271 * 2 1 4 4 C 1.30850 * 111.00041 * 179.72912 * 3 2 1 5 5 C 1.39783 * 107.89418 * 0.45336 * 4 3 2 6 6 Cl 1.73599 * 127.34405 * 179.83126 * 5 4 3 7 7 C 1.36796 * 125.19348 * 180.02562 * 2 1 3 8 8 C 1.46870 * 126.91432 * 0.02642 * 7 2 1 9 9 O 1.21564 * 120.00287 * 179.97438 * 8 7 2 10 10 O 1.34839 * 119.99958 * 359.97227 * 8 7 2 11 11 C 1.45196 * 117.00260 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47439 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.46944 * 300.00234 * 12 11 10 14 14 C 1.53004 * 109.46787 * 60.00196 * 12 11 10 15 15 C 1.50695 * 109.47285 * 179.97438 * 12 11 10 16 16 H 1.08005 * 119.99818 * 0.02562 * 15 12 11 17 17 C 1.37880 * 120.00040 * 179.97438 * 15 12 11 18 18 N 1.31512 * 120.00112 * 0.02562 * 17 15 12 19 19 Si 1.86799 * 119.99900 * 180.02562 * 17 15 12 20 20 H 1.48495 * 109.47563 * 89.99921 * 19 17 15 21 21 H 1.48504 * 109.46828 * 210.00155 * 19 17 15 22 22 H 1.48505 * 109.47334 * 329.99975 * 19 17 15 23 23 H 1.08996 * 109.47373 * 269.98629 * 1 2 3 24 24 H 1.08998 * 109.46735 * 29.98126 * 1 2 3 25 25 H 1.08998 * 109.47032 * 149.98151 * 1 2 3 26 26 H 1.07994 * 126.05614 * 180.30480 * 4 3 2 27 27 H 1.09007 * 109.47163 * 300.00137 * 11 10 8 28 28 H 1.09003 * 109.47003 * 59.99576 * 11 10 8 29 29 H 1.09000 * 109.47263 * 59.99842 * 13 12 11 30 30 H 1.09001 * 109.46963 * 179.97438 * 13 12 11 31 31 H 1.08999 * 109.46970 * 299.99285 * 13 12 11 32 32 H 1.08992 * 109.47588 * 59.99832 * 14 12 11 33 33 H 1.09001 * 109.46570 * 180.02562 * 14 12 11 34 34 H 1.09000 * 109.46665 * 299.99697 * 14 12 11 35 35 H 0.96997 * 120.00453 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0496 0.0000 4 6 3.4737 0.7288 0.0058 5 6 3.5640 -0.6661 -0.0006 6 17 5.0093 -1.6278 -0.0010 7 6 2.2534 -1.1179 -0.0005 8 6 1.8022 -2.5156 -0.0017 9 8 2.6173 -3.4175 -0.0025 10 8 0.4838 -2.7984 -0.0018 11 6 0.1106 -4.2016 -0.0024 12 6 -1.4145 -4.3237 -0.0031 13 6 -1.9810 -3.6458 1.2461 14 6 -1.9799 -3.6451 -1.2525 15 6 -1.8019 -5.7800 -0.0044 16 1 -1.0367 -6.5423 -0.0042 17 6 -3.1330 -6.1394 -0.0046 18 7 -4.0647 -5.2112 -0.0043 19 14 -3.6131 -7.9446 -0.0055 20 1 -3.7404 -8.4237 1.3943 21 1 -4.9120 -8.1110 -0.7058 22 1 -2.5685 -8.7344 -0.7058 23 1 -0.3634 -0.0002 1.0276 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5141 26 1 4.3040 1.4193 0.0117 27 1 0.5138 -4.6844 -0.8926 28 1 0.5138 -4.6852 0.8874 29 1 -1.7008 -2.5924 1.2465 30 1 -3.0676 -3.7324 1.2453 31 1 -1.5783 -4.1293 2.1361 32 1 -1.5763 -4.1279 -2.1424 33 1 -3.0664 -3.7317 -1.2527 34 1 -1.6997 -2.5917 -1.2519 35 1 -5.0011 -5.4639 -0.0041 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850950057.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:20 Heat of formation + Delta-G solvation = -30.816637 kcal Electronic energy + Delta-G solvation = -20831.411638 eV Core-core repulsion = 17470.995043 eV Total energy + Delta-G solvation = -3360.416595 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.79455 -41.28002 -38.37810 -37.67051 -36.67939 -34.42988 -33.29021 -32.16573 -28.21001 -27.77812 -27.55255 -27.15661 -24.78966 -22.85640 -21.64257 -20.74874 -19.40837 -17.95476 -17.90193 -17.77511 -17.07214 -16.89987 -16.55373 -15.71136 -15.23506 -14.85935 -14.75639 -14.64672 -14.12207 -13.91986 -13.38734 -13.29173 -13.15758 -12.92955 -12.85972 -12.83802 -12.63046 -12.32332 -12.13100 -11.83706 -11.76375 -11.64476 -11.30658 -11.22944 -10.73572 -10.54460 -10.38989 -9.95386 -8.04699 -6.21614 -0.31216 0.71687 1.27306 1.35779 1.43295 1.47126 1.54499 1.64071 1.67445 2.45190 3.19624 3.30130 3.43385 3.82234 4.17258 4.25574 4.26482 4.32629 4.38350 4.60766 4.67804 4.86549 5.00471 5.06357 5.19203 5.23761 5.26993 5.42285 5.47928 5.65720 5.65946 6.11187 6.18177 6.37670 6.48066 6.72029 6.82503 7.46373 8.94537 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.029581 B = 0.004239 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.329187 B = 6603.287624 C = 7353.252268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.249 5.249 3 N -0.258 5.258 4 C 0.023 3.977 5 C -0.092 4.092 6 Cl -0.007 7.007 7 C -0.031 4.031 8 C 0.528 3.472 9 O -0.508 6.508 10 O -0.341 6.341 11 C 0.098 3.902 12 C 0.063 3.937 13 C -0.119 4.119 14 C -0.119 4.119 15 C -0.534 4.534 16 H 0.048 0.952 17 C 0.032 3.968 18 N -0.896 5.896 19 Si 0.947 3.053 20 H -0.278 1.278 21 H -0.282 1.282 22 H -0.275 1.275 23 H 0.104 0.896 24 H 0.127 0.873 25 H 0.104 0.896 26 H 0.236 0.764 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.039 0.961 30 H 0.063 0.937 31 H 0.017 0.983 32 H 0.018 0.982 33 H 0.063 0.937 34 H 0.038 0.962 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.351 12.918 -0.033 16.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.039 5.039 3 N -0.093 5.093 4 C -0.152 4.152 5 C -0.131 4.131 6 Cl 0.022 6.978 7 C -0.158 4.158 8 C 0.371 3.629 9 O -0.395 6.395 10 O -0.257 6.257 11 C 0.025 3.975 12 C 0.063 3.937 13 C -0.177 4.177 14 C -0.177 4.177 15 C -0.572 4.572 16 H 0.066 0.934 17 C -0.168 4.168 18 N -0.534 5.534 19 Si 0.774 3.226 20 H -0.204 1.204 21 H -0.208 1.208 22 H -0.200 1.200 23 H 0.123 0.877 24 H 0.145 0.855 25 H 0.122 0.878 26 H 0.252 0.748 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.036 0.964 32 H 0.037 0.963 33 H 0.082 0.918 34 H 0.057 0.943 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.563 13.414 -0.042 16.474 hybrid contribution 0.322 -2.237 0.035 2.260 sum 9.886 11.177 -0.007 14.921 Atomic orbital electron populations 1.22804 0.69737 1.07334 1.06628 1.45961 1.09067 1.00997 1.47903 1.73296 1.03813 1.13385 1.18788 1.24135 0.94539 0.91877 1.04622 1.21571 0.87128 0.93592 1.10797 1.98370 1.32007 1.70620 1.96787 1.20326 0.91429 0.86671 1.17357 1.19823 0.81979 0.87464 0.73588 1.90895 1.55308 1.47112 1.46215 1.86566 1.23478 1.32577 1.83055 1.23408 0.98358 0.75383 1.00392 1.18268 0.86213 0.94951 0.94256 1.21636 1.02773 0.96964 0.96324 1.21644 1.02806 0.96897 0.96349 1.21184 0.92244 0.91579 1.52155 0.93400 1.25418 0.96362 1.00610 0.94445 1.69908 1.00326 1.33111 1.50080 0.85728 0.77538 0.81311 0.78051 1.20441 1.20777 1.19980 0.87748 0.85515 0.87763 0.74825 0.92846 0.92842 0.94224 0.91800 0.96365 0.96297 0.91778 0.94267 0.92859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.45 10.81 127.77 1.38 2.83 16 2 N -0.25 -6.19 3.75 -355.98 -1.34 -7.53 16 3 N -0.26 -5.92 11.89 -57.08 -0.68 -6.60 16 4 C 0.02 0.47 12.03 85.21 1.03 1.49 16 5 C -0.09 -2.40 6.88 22.74 0.16 -2.24 16 6 Cl -0.01 -0.17 28.13 -2.72 -0.08 -0.24 16 7 C -0.03 -0.90 6.96 40.72 0.28 -0.62 16 8 C 0.53 18.50 7.93 70.08 0.56 19.06 16 9 O -0.51 -20.07 15.63 19.63 0.31 -19.77 16 10 O -0.34 -12.18 6.35 -57.51 -0.37 -12.55 16 11 C 0.10 4.03 4.27 71.98 0.31 4.34 16 12 C 0.06 2.88 0.58 -52.93 -0.03 2.85 16 13 C -0.12 -5.24 8.11 71.98 0.58 -4.65 16 14 C -0.12 -5.23 8.11 71.98 0.58 -4.64 16 15 C -0.53 -27.40 8.01 25.60 0.21 -27.19 16 16 H 0.05 2.49 7.74 -2.91 -0.02 2.46 16 17 C 0.03 1.64 5.15 84.66 0.44 2.08 16 18 N -0.90 -46.57 9.35 21.45 0.20 -46.37 16 19 Si 0.95 41.44 29.54 68.60 2.03 43.47 16 20 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 21 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 22 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 23 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 24 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.10 2.42 5.72 -2.39 -0.01 2.40 16 26 H 0.24 2.68 8.06 -2.91 -0.02 2.66 16 27 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 28 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.04 1.49 7.68 -2.39 -0.02 1.47 16 30 H 0.06 3.10 6.07 -2.39 -0.01 3.09 16 31 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.06 3.11 6.07 -2.39 -0.01 3.09 16 34 H 0.04 1.47 7.25 -2.39 -0.02 1.45 16 35 H 0.26 13.09 8.31 -92.71 -0.77 12.32 16 Total: -1.00 -58.41 310.55 6.67 -51.73 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: 1.11 Total: 4.56 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: 5.49 Total: -6.70 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: -1.81 Total: -60.50 kcal Atomic # 8 Polarization: -32.26 SS G_CDS: -0.06 Total: -32.31 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -0.08 Total: -0.24 kcal Total: -58.41 6.67 -51.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850950057.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.917 kcal (2) G-P(sol) polarization free energy of solvation -58.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds